Résumé: Our knowledge on the biology and ecology of marine species have improved greatly through the use of archival tags by enabling the collection on information from individual in the wild. This is specifically true for large pelagic species such as the Atlantic Bluefin tuna (ABFT, Thunnus thynnus) where, for the first time, it has been possible to confirm through fisheries-independent data, migration patterns, reproductive and feeding behaviours and habitat use. However, large-scale tagging experiments that would enable researchers to tackle group behaviour are difficult to set up. On the one hand, the impact of the actual tagging operation should be as minimal as possible to avoid any change in behaviour of the fish which could influence tag data analyses. On the other hand, large scale tagging experiments require handling a large number of animals in a relatively short period of time. In the present manuscript, a methodology for tagging several large ABFT with satellite tags was tested with ABFT caught from a cage of a Maltese farm. The total time of the operation, from the moment fish were caught by handline to release back to the sea lasted an average of 10 min for the 3 fish tagged. The handling of the fish on the deck lasted less than 2 min. This methodology proved successful at tagging several large (158–182 cm) fishes in a very short time, while ensuring the best conditions for the fish during tagging and subsequent release. This procedure requires substantial logistical preparation and an experienced crew team but, by reducing the time required for the operation, opens up the possibility of large scale tagging activities of large fish held in cages or caught by purse seiners.

Résumé: Tuna are marine apex predators that inhabit the tropical and sub-tropical waters of the Indian Ocean where they support socially and economically important fisheries. Key component of pelagic communities, tuna are bioindicator species of anthropogenic and climate-induced changes through modifications of the structure and related energy-flow of food webs and ecosystems. The IndianEcoTuna dataset provides a panel of ecological tracers measured in four soft tissues (white muscle, red muscle, liver, gonads) from 1,364 individuals of four species, i.e., the albacore (ALB, Thunnus alalunga), the bigeye (BET, T. obesus), the skipjack (SKJ, Katsuwomus pelamis), and the yellowfin (YFT, T. albacares), collected throughout the western Indian Ocean from 2009 to 2015. Sampling was carried out during routine monitoring programs, at sea by observers onboard professional vessels or at landing. For each record, the type of fishing gear, the conservation mode, as well as the fishing date and catch location are provided. Individuals were sampled to span a wide range of body sizes: 565 ALB with fork length from 58 to 118 cm, 155 BET from 29.5 to 173 cm, 304 SKJ from 30 to 74 cm, and 340 YFT from 29 to 171.5 cm. The IndianEcoTuna dataset combines: (1) 9,512 records of carbon and nitrogen stable isotopes (percent element weights, δ13C and δ15N values) in 1,185 fish, (2) 887 concentrations of total proteins in 242 fish, (3) 8,356 concentrations of total lipids and three lipid classes (triacylglycerols TAG; phospholipids PL; sterols ST) in 695 fish, and (4) 1,150 and 1,033 profiles of neutral and polar fatty acids in 397 and 342 fish, respectively. Information on sex and weights of the whole fish, gonads, liver and stomach is provided. Because of the essential trophic role and wide-ranging of tuna in marine systems, and the large panel of tropho-energetic tracers and derived-key quantitative parameters provided (e.g., niche width, trophic position, condition indices), the IndianEcoTuna dataset should be of high interest for global and regional research on marine trophic ecology and food web analysis, as well as on the impacts of anthropogenic changes on Indian Ocean marine ecosystems. There are no copyright restrictions for research and/or teaching purposes. Usage of the dataset must include citation of this Data Paper.

Résumé: We compiled and analysed logbook data from the French trawl albacore fishery covering the period 1991-2015. The dataset comprised catch and effort data for the French fleet operating in the Bay of Biscay and Celtic Sea, as well as spatiotemporal and gear characteristics. Generalized linear modelling was used to model spatial, seasonal, environmental, and gear covariates of fleet CPUE rates. A long-term index of relative abundance is provided that can be integrated into the stock assessment of North Atlantic albacore. The analysis revealed higher albacore CPUE associated with relatively low sea surface temperature and distinct seasonal effects. The derived abundance trend for the French trawl fishery agreed with the estimated time series of stock abundance from recent assessments.

Résumé: Depredation in marine ecosystems is defined as the damage or removal of fish or bait from fishing gear by predators. Depredation raises concerns about the conservation of species involved, fisheries yield and profitability, and reference points based on stock assessment of depredated species. Therefore, the development of accurate indicators to assess the impact of depredation is needed. Both the Reunion Island and the Seychelles archipelago pelagic longline fisheries targeting swordfish (Xiphias gladius) and tuna (Thunnus spp.) are affected by depredation from toothed whales and pelagic sharks. In this study, we used fishery data collected between 2004 and 2015 to propose depredation indicators and to assess depredation levels in both fisheries. For both fisheries, the interaction rate (depredation occurrence) was significantly higher for shark compared to toothed whale depredation. However, when depredation occurred, toothed whale depredation impact was significantly higher than shark depredation impact, with higher depredation per unit effort (number of fish depredated per 1000 hooks) and damage rate (proportion of fish depredated per depredated set). The gross depredation rate in the Seychelles was 18.3%. A slight increase of the gross depredation rate was observed for the Reunion Island longline fleet from 2011 (4.1% in 2007–2010 and 4.4% in 2011–2015). Economic losses due to depredation were estimated by using these indicators and published official statistics. A loss of 0.09 EUR/hook due to depredation was estimated for the Reunion Island longline fleet, and 0.86 EUR/hook for the Seychelles. These results suggest a southward decreasing toothed whale and shark depredation gradient in the southwest Indian Ocean. Seychelles depredation levels are among the highest observed in the world revealing this area as a “hotspot” of interaction between pelagic longline fisheries and toothed whales. This study also highlights the need for a set of depredation indicators to allow for a global comparison of depredation rates among various fishing grounds worldwide.

Résumé: Many highly mobile species are known to use persistent pathways or corridors to move between habitat patches in which conditions are favorable for particular activities, such as breeding or foraging. In the marine realm, environmental variability can lead to the development of temporary periods of anomalous oceanographic conditions that can connect individuals to areas of habitat outside a population's usual range, or alternatively, restrict individuals from areas usually within their range, thus acting as ecological bridges or ecological barriers. These temporary features can result in novel or irregular trophic interactions and changes in population spatial dynamics, and, therefore, may have significant implications for management of marine ecosystems. Here, we provide evidence of ecological bridges and barriers in different ocean regions, drawing upon five case studies in which particular oceanographic conditions have facilitated or restricted the movements of individuals from highly migratory species. We discuss the potential population-level significance of ecological bridges and barriers, with respect to the life history characteristics of different species, and inter- and intra-population variability in habitat use. Finally, we summarize the persistence of bridge dynamics with time, our ability to monitor bridges and barriers in a changing climate, and implications for forecasting future climate mediated ecosystem change.

Résumé: Given the increasingly extensive use of drifting fish aggregation devices (FADs) by the purse-seine fisheries targeting tropical tunas, fishing effort restrictions have been introduced to manage tropical tuna stocks. However, these measures are focused on the protection of juvenile tunas and do not take account of the potential impact on bycatch or associated megafauna (whales and whale sharks). An iterative “fishing-day” Monte Carlo simulation model was developed to investigate the consequences on tropical tunas and bycatch of introducing extensive area 6-month moratoria on FAD activities. The model allowed for variability in a range of plausible values of the parameters characterizing the fishing operations conducted by European purse-seiners in the eastern tropical Atlantic and western Indian Oceans for the period 2005-2014. Monte Carlo simulations, using probabilities based on these fishery data, were carried out for the French and Spanish fishing fleets separately to account for differences in fishing strategies. The models predicted a decrease in FAD sets and an increase in free school sets. As a consequence, the catch of small tuna (<10 kg) decreased while the catch of large tuna (>= 10 kg) increased, leading to an overall increase in tuna catch of 100-200 tons/year/vessel in the Atlantic Ocean, and a decrease of 400-1500 tons/year/vessel in the Indian Ocean. The bycatch decreased in the Indian Ocean, while in the Atlantic Ocean billfishes, turtles and chondrichthyans bycatch increased slightly and other bony fishes decreased. Because fishing practices were modified, whale and whale shark associated sets increased slightly in the Indian Ocean.

Résumé: Moored fish aggregating devices (MFADs) are increasingly being used in small-scale tropical fisheries to access pelagic fish species that are otherwise difficult to harvest in large numbers. Little attention has yet been paid to monitoring MFADs in coastal areas, however. This is most likely due to the small-scale nature of most fisheries that utilize them and the presumed lower impact of those fisheries on fish stocks and their ecosystems. In this paper, we examined the abundance and density of MFADs around Guadeloupe, using aerial line transect surveys. Estimated MFAD densities were found to be high compared with previously reported densities in this area, especially within the 22-45 km range offshore. We examine and discuss possible reasons for these high densities. The main drivers appear to be the target species dolphinfish (Coryphaena hippurus) and yellowfin tuna (Thunnus albacares) and related fishing behaviour. We present different approaches for reducing and monitoring MFADs densities, including the co-management of MFAD territorial use rights by fishing communities. (C) 2016 Elsevier B.V. All rights reserved.

Résumé: Some recent modelling papers projecting smaller fish sizes and catches in a warmer future are based on erroneous assumptions regarding (i) the scaling of gills with body mass and (ii) the energetic cost of 'maintenance'. Assumption (i) posits that insurmountable geometric constraints prevent respiratory surface areas from growing as fast as body volume. It is argued that these constraints explain allometric scaling of energy metabolism, whereby larger fishes have relatively lower mass-specific metabolic rates. Assumption (ii) concludes that when fishes reach a certain size, basal oxygen demands will not be met, because of assumption (i). We here demonstrate unequivocally, by applying accepted physiological principles with reference to the existing literature, that these assumptions are not valid. Gills are folded surfaces, where the scaling of surface area to volume is not constrained by spherical geometry. The gill surface area can, in fact, increase linearly in proportion to gill volume and body mass. We cite the large body of evidence demonstrating that respiratory surface areas in fishes reflect metabolic needs, not vice versa, which explains the large interspecific variation in scaling of gill surface areas. Finally, we point out that future studies basing their predictions on models should incorporate factors for scaling of metabolic rate and for temperature effects on metabolism, which agree with measured values, and should account for interspecific variation in scaling and temperature effects. It is possible that some fishes will become smaller in the future, but to make reliable predictions the underlying mechanisms need to be identified and sought elsewhere than in geometric constraints on gill surface area. Furthermore, to ensure that useful information is conveyed to the public and policymakers about the possible effects of climate change, it is necessary to improve communication and congruity between fish physiologists and fisheries scientists.

Résumé: The abundance of tuna, an important top predator that ranges throughout tropical and subtropical oceans, is now largely determined by fishing activity. Fishing activity, in turn, is determined by the interaction of fish availability, fishing capacity, fishing costs and global markets for tuna products. In the face of overfishing, the continued sustainable supply of tuna is likely to require improved global governance, that would benefit from modeling frameworks capable of integrating market forces with the availability of fish in order to consider alternative future projections. Here we describe such a modeling framework, in which we develop several simple, contrasting scenarios for the development of the tuna supply chain in order to illustrate the utility of the approach for global evaluation of management strategies for tuna and other complex, stock-structured fisheries. The model includes multiple national and multi-national fishing fleets, canneries and fresh/frozen markets, and connects these to global consumers using a network of flows. The model is calibrated using recent data on fish catch, cannery and fresh/frozen production, and consumption. Scenarios explore the control on future outcomes in the global tuna fishery by representing, in a simple way, the effects of (1) climate change, (2) changes in the global demand for tuna, and (3) changes in the access to fishing grounds (marine reserves). The results emphasize the potential importance of increasing demand in provoking a global collapse, and suggest that controlling tuna production by limiting technical efficiency is a potential countermeasure. Finally we discuss the outcomes in terms of potential extensions of the scenario approach allowed by this global network model of the tuna supply chain.

Résumé: Commercial tunas and billfishes (swordfish, marlins and sailfish) provide considerable catches and income in both developed and developing countries. These stocks vary in status from lightly exploited to rebuilding to severely depleted. Previous studies suggested that this variability could result from differences in life-history characteristics and economic incentives, but differences in exploitation histories and management measures also have a strong effect on current stock status. Although the status (biomass and fishing mortality rate) of major tuna and billfish stocks is well documented, the effect of these diverse factors on current stock status and the effect of management measures in rebuilding stocks have not been analysed at the global level. Here, we show that, particularly for tunas, stocks were more depleted if they had high commercial value, were long-lived species, had small pre-fishing biomass and were subject to intense fishing pressure for a long time. In addition, implementing and enforcing total allowable catches (TACs) had the strongest positive influence on rebuilding overfished tuna and billfish stocks. Other control rules such as minimum size regulations or seasonal closures were also important in reducing fishing pressure, but stocks under TAC implementations showed the fastest increase of biomass. Lessons learned from this study can be applied in managing large industrial fisheries around the world. In particular, tuna regional fisheries management organizations should consider the relative effectiveness of management measures observed in this study for rebuilding depleted large pelagic stocks.

Résumé: Recently, the abundance of young Atlantic bluefin tuna (Thunnus thynnus) tripled in the northwestern Mediterranean following effective management measures. We investigated whether its predation on sardine (Sardina pilchardus) and anchovy (Engraulis encrasicolus) could explain their concurrent size and biomass decline, which caused a fishery crisis. Combining the observed diet composition of bluefin tuna, their modelled daily energy requirements, their population size, and the abundance of prey species in the area, we calculated the proportion of the prey populations that were consumed by bluefin tuna annually over 2011-2013. To assess whether tuna could alter the size structure of the three small pelagic fish populations (anchovy, sardine, and sprat (Sprattus sprattus)), the size distributions of the consumed prey species were compared with those of the wild populations. We estimated that the annual consumption of small pelagic fish by bluefin tuna is less than 2% of the abundance of these populations. Furthermore, size selectivity patterns were not observed. We thus concluded that tuna predation is unlikely to be the main cause of major changes in the small pelagic fish populations from this area.

Résumé: Estimating the abundance of pelagic fish species is a challenging task, due to their vast and remote habitat. Despite the development of satellite, archival and acoustic tagging techniques that allow the tracking of marine animals in their natural environments, these technologies have so far been underutilized in developing abundance estimations. We developed a new method for estimating the abundance of tropical tuna that employs these technologies and exploits the aggregative behavior of tuna around floating objects (FADs). We provided estimates of abundance indices based on a simulated set of tagged fish and studied the sensitivity of our method to different association dynamics, FAD numbers, population sizes and heterogeneities of the FAD-array. Taking the case study of yellowfin tuna (Thunnus albacares) acoustically-tagged in Hawaii, we implemented our approach on field data and derived for the first time the ratio between the associated and the total population. With more extensive and long-term monitoring of FAD-associated tunas and good estimates of the numbers of fish at FADs, our method could provide fisheries-independent estimates of populations of tropical tuna. The same approach can be applied to obtain population assessments for any marine and terrestrial species that display associative behavior and from which behavioral data have been acquired using acoustic, archival or satellite tags.

Résumé: The reproductive biology of albacore tuna, Thunnus alalunga, in the western Indian Ocean was examined through analysis of the sex ratio, spawning season, length-at-maturity (L50), spawning frequency and fecundity. From 2013 to 2015, a total of 923 female and 867 male albacore were sampled. A bias in sex ratio was found in favor of females with fork length (LF) < 100 cm. Using histological analyses and gonadosomatic index, spawning was found to occur between 10°S and 30°S, mainly to the east of Madagascar from October to January. Large females contributed more to reproduction through their longer spawning period compared to small individuals. The L50 (mean ± standard error) of female albacore was estimated at 85.3 ± 0.7 cm LF. Albacore spawn on average every 2.2 days within the spawning region and spawning months, from November to January. Batch fecundity ranged between 0.26 and 2.09 million oocytes and the relative batch fecundity (mean ± standard deviation) was estimated at 53.4 ± 23.2 oocytes g-1 of somatic-gutted weight. The study provides new information on the reproductive development and classification of albacore in the western Indian Ocean. The reproductive parameters will reduce uncertainty in current stock assessment models which will eventually assist the fishery to be sustainable for future generations.

Résumé: 1. Whale shark, the world's largest fish, is believed to be particularly vulnerable owing to its biological characteristics (slow growth, late maturation, great longevity) and is listed as Vulnerable by IUCN and included in Appendix II of CITES. 2. Whale sharks are occasionally encircled in tropical tuna purse-seine nets, throughout this global fishery. Although apparent immediate survival rates following encirclement and release have recently been assessed through scientific onboard observer programmes, a more rigorous methodology is still required for studying post-released survival. 3. This work provides a method for applying pop-up satellite tags and reports an enhanced release procedure for whale sharks. The first assessment of survival after release from purse-seine nets involved six whale sharks tagged between May and September 2014 in the eastern tropical Atlantic Ocean. Five tags transmitted data: three popped up as programmed (after 30 days), while two surfaced prematurely (one after 21 and the other after 71 days (programmed to pop off after 30 and 90 days, respectively)) but showed no sign of unusual behaviour. 4. Overall, whale sharks survived at least 21 days (one at least 71 days) after release from purse-seine nets. These observations based on five large individuals (total length > 8 m), suggest that whale sharks have a good chance of survival when released with the proposed method. 5. Additional tagging in this and other oceans, especially of juveniles which may be more sensitive to encirclement and release operations, is essential to further assess whale shark post-release survival rates in tuna purse-seine fisheries. Copyright © 2016 John Wiley & Sons, Ltd.

Résumé: The identification and mitigation of adverse effects of the bycatch of tuna longline fishery have been mainly developed and implemented for seabirds, sharks and turtles and, the knowledge on teleost bycatch for this fishery, remains very poor. This paper contributes to a comprehensive assessment of life history traits and fishery attributes of target and bycatch species caught by the tuna longline fishery in the South Atlantic and Indian Oceans. Data was compiled on seven life history traits and three fishery attributes for 33 and 27 teleost stocks caught by longliners in South Atlantic and Indian Oceans, respectively. In addition, each species was assigned into four categories describing the fate of the catch: target species for commercial use, bycatch species kept for consumption, bycatch species kept for commercial use and discarded bycatch. Life history traits and fishery attributes did not differ between oceans. However, non-target but commercialized species were smaller in the Atlantic Ocean. Teleosts caught by the tuna longline fishery was segregated into three main groups: (1) the fast growing species represented mainly by dolphinfishes (Coryphaena hippurus and C. equisellis), skipjack tuna (Katsuwonus pelamis), kawakawa (Euthynnus affinis), bullet tuna (Auxis rochei), snoek (Thyrsites atun) and blackfin tuna (Thunnus atlanticus); (2) target tunas and most other bycatch species which were part of an intermediate group and (3) billfishes including swordfish representing the large and slow growing species with moderate to high market values and unknown or highly uncertain stock status. Investment in some key life history traits (such as growth coefficient) and the development of quantitative or semi-quantitative approaches (stock assessment and Ecological Risk Assessment) should be priorized as precautionary management measures for these species.

Résumé: Fish aggregating devices (FADs) are floating objects used by fishers to aggregate pelagic fish such as tunas, and enhance the catch of these species. Because this is so important for tuna fisheries, nearly 100,000 FADs are deployed by fishers every year in the world's tropical oceans. Fishers use geo-locating buoys to track and maintain these FADs by visiting them regularly, reinforcing them if they are weak or replacing them. Many of these buoys are now equipped with echo-sounders in order to provide remote information on the aggregated biomass. FADs are currently only used for fishing purposes but they can also serve scientific objectives. In this paper, we investigate the potential of these data for improving our knowledge on the ecology of tunas and other pelagic animals as well as to obtain fishery-independent indices of distribution and abundance. These FADs also represent platforms for scientists to deploy scientific instruments, such as electronic tag receivers, cameras and hydrophones. Because FADs naturally aggregate several pelagic species other than tuna, these instrumented FADs can be a unique opportunity to observe pelagic ecosystem dynamics that are not possible from conventional research vessels. The amount of cost-effective data that they can provide would make a significant contribution to the scientific understanding of pelagic ecosystems. This information is vital for improved conservation and management of pelagic fisheries. (C) 2015 Elsevier B.V. All rights reserved.

Résumé: Albacore is one of the most important commercially harvested species in the world’s oceans. Despite a long history of scientific research, there is no global review or synthesis of knowledge about the species across all oceanic regions. We analysed 613 published studies that report on albacore and summarize the current state of knowledge on biology, stock structure, fisheries and management. To describe the trends in albacore fisheries, we examined the catch and effort databases of Regional Fisheries Management Organisations. The stocks of albacore are generally largest in the Pacific Ocean and smallest in the Mediterranean Sea. The biology of Atlantic and Pacific Ocean stocks are well documented, while the Indian Ocean and the Mediterranean Sea stocks are more data deficient. These two latter areas should be considered as priorities for future research and data collection in order to better understand the state of global stocks of albacore tuna. Improved information would also assist with delineating stock boundaries needed for sustainable management of this species.

Résumé: Global population genetic structure of yellowfin tuna (Thunnus albacares) is still poorly understood despite its relevance for the tuna fishery industry. Low levels of genetic differentiation among oceans speak in favour of the existence of a single panmictic population worldwide of this highly migratory fish. However, recent studies indicated genetic structuring at a much smaller geographic scales than previously considered, pointing out that YFT population genetic structure has not been properly assessed so far. In this study, we demonstrated for the first time, the utility of 2b-RAD genotyping technique for investigating population genetic diversity and differentiation in high gene-flow species. Running de novo pipeline in Stacks, a total of 6772 high-quality genome-wide SNPs were identified across Atlantic, Indian and Pacific population samples representing all major distribution areas. Preliminary analyses showed shallow but significant population structure among oceans (FST = 0.0273; P-value < 0.01). Discriminant Analysis of Principal Components endorsed the presence of genetically discrete yellowfin tuna populations among three oceanic pools. Although such evidence needs to be corroborated by increasing sample size, these results showed the efficiency of this genotyping technique in assessing genetic divergence in a marine fish with high dispersal potential.

Résumé: The “condition” is used as an indicator of fish health and is generally equated with the quantity of energy reserves. Biometric condition factors have been widely used and preferred over costly and time-consuming biochemical condition. Here, we investigated the relevance of four common condition factors based on biometric measurements (Le Cren's index, girth -length index, gonado-somatic index and hepato-somatic index) and of size- and weight -based empirical models to describe the physiological condition of tropical tunas. Biometric condition factors of bigeye (Thunnus obesus), skipjack (Katsuwonus pelamis) and yellowfin (Thunnus albacares) tunas sampled throughout 2013 in the western Indian Ocean region were assessed against benchmark biochemical indices (lipid content, protein content, triacylglycerol:sterol ratio and energy density) estimated in tissues with different physiological functions, i.e. red muscle, white muscle, liver, and gonads. Our findings suggest that tropical tunas do not store lipids in white muscle and that protein content is less variable than lipid content, which largely varies with ontogeny and the seasons according to tissue and species. This variability induced inconsistency between biometric factors, including the empirically adjusted ones, and biochemical indices, with the exception of the gonado-somatic index that fitted well to the composition of the gonads in the three species, and especially in females. (C) 2016 Elsevier Ltd. All rights reserved.

Résumé: A key objective of the Regional Tuna Tagging Project Indian Ocean was to estimate tag-shedding rates, Type-I (immediate tag shedding) and Type-II (long-term tag shedding). To assess this, a series of double-tagging experiments (26,899 double tags released with 4555 recoveries) were conducted as part of the broader tagging program. After omitting data from tags placed by less experienced taggers, the results of our analyses did not show any evidence that individual differences between taggers (i.e., a tagger effect) impacted estimates of tag-shedding rates. However, it was shown that the probability of retaining the second tag (inserted in the left side of the fish) was larger than retaining the first tag (inserted in the right side, i.e., the side typically tagged in single-tagging experiments). We used a Bayesian model averaging approach to account for model uncertainty in the estimates of the parameters a and L used to calculate the probability of tag retention Q(t)= alpha e-((L t)) for the right tag. The parameter estimates were alpha = 0.993 and L (per year) = 0.030 (skipjack); alpha = 0.972 and L (per year) = 0.040 (yellowfin); and alpha = 0.990 and L (per year) = 0.021 (bigeye). These results agree with estimates obtained by other large-scale tropical tuna tagging projects. We showed that tag loss has a moderate impact on the underestimation of the exploitation rate (bias = 2-6% depending on the tuna species). However, non-reporting leads to a bias of around 7% when using the high reporting rate estimate of purse seiners. Finally, tag shedding (specifically Type-II shedding) modified the individual weights of the samples of recaptures. Consequently, the total instantaneous mortality estimates (Z; calculated from mean times-at-large) were reduced by a range of 1-3%.

Résumé: The difficulty of ensuring adequate statistical coverage of whole fleets is a challenge for the implementation of observer programmes and may reduce the usefulness of the data they obtain for management purposes. This makes it necessary to find cost-effective alternatives. Electronic monitoring (EM) systems are being used in some fisheries as an alternative or a complement to human observers. The objective of this study was to test the use and reliability of EM on the tropical tuna purse-seine fishery. To achieve this objective, seven trips of tuna purse seiners operating in the three Oceans were closely monitored to compare the information provided by EM and on-board observers to determine if EM can reliably document fishing effort, set type, tuna catch, and bycatch. Total tuna catch per set was not significantly different between EM and observer datasets; however, regarding species composition, only main species matched between EM and observers. Success on set-type identification using EM varied between 98.3 and 56.3%, depending on the camera placement. Overall, bycatch species were underestimated by EM, but large bodied species, such as billfishes, were well documented. The analyses in this study showed that EM can be used to determine the fishing effort (number of sets) and total tuna catch as reliably as observers can. Set-type identification also had very promising results, but indicated that refinement of the methods is still needed. To be fully comparable with observer data, improvements for accurately estimating the bycatch will need to be developed in the application and use of the EM system. Operational aspects that need to be improved for an EM programme to be implemented include standardizing installation and on-board catch handling methodology as well as improvements in video technology deployment.

Résumé: In the open ocean, movements of migratory fish populations are typically surveyed using tagging methods that are subject to low sample sizes for archive tags, except for a few notable examples, and poor temporal resolution for conventional tags. Alternatively, one can infer patterns of movement of migratory fish by tracking movements of their predators, i.e., fishing vessels, whose navigational systems (e.g., GPS) provide accurate and frequent VMS (vessel monitoring system) records of movement in pursuit of prey. In this paper, we develop a state-space model that infers the foraging activities of fishing vessels from their tracks. Second, we link foraging activities to probabilities of tuna presence. Finally, using multivariate geostatistical interpolation (cokriging) we map the probability of tuna presence together with their estimation variances and produce a time series of indices of abundance. While the segmentation of the trajectories is validated by observers' data, the present VMS-index is compared to catch rate and proved to be useful for management perspectives. The approach reported in this manuscript extends beyond the case study considered. It can be applied to any foragers that engage in an attempt of capture when they see prey and for whom this attempt is linked to a tractable change in behavior.

Résumé: Climate-induced changes in the physical, chemical, and biological environment are expected to increasingly stress marine ecosystems, with important consequences for fisheries exploitation. Here, we use the APECOSM-E numerical model (Apex Predator ECOSystem Model – Estimation) to evaluate the future impacts of climate change on the physiology, spatial distribution, and abundance of skipjack tuna, the worldwide most fished species of tropical tuna. The main novelties of our approach lie in the mechanistic link between environmental factors, metabolic rates, and behavioral responses and in the fully three dimensional representation of habitat and population abundance. Physical and biogeochemical fields used to force the model are provided by the last generation of the IPSL-CM5 Earth System Model run from 1990 to 2100 under a &8216;business-as-usual&8217; scenario (RCP8.5). Our simulations show significant changes in the spatial distribution of skipjack tuna suitable habitat, as well as in their population abundance. The model projects deterioration of skipjack habitat in most tropical waters and an improvement of habitat at higher latitudes. The primary driver of habitat changes is ocean warming, followed by food density changes. Our projections show an increase of global skipjack biomass between 2010 and 2050 followed by a marked decrease between 2050 and 2095. Spawning rates are consistent with population trends, showing that spawning depends primarily on the adult biomass. On the other hand, growth rates display very smooth temporal changes, suggesting that the ability of skipjack to keep high metabolic rates in the changing environment is generally effective. Uncertainties related to our model spatial resolution, to the lack or simplification of key processes and to the climate forcings are discussed.

Résumé: The Mozambique Channel (western Indian Ocean) is a dynamic environment characterised by strong mesoscale features, which influence all biological components of the pelagic ecosystem. We investigated the distribution, abundance and feeding behaviour of seabirds in the Mozambique Channel in relation to physical and biological environmental variables, with a specific interest in mesoscale features. Seabird censuses were conducted in summer and winter during 7 cruises in the southern and northern Mozambique Channel. Tropical species accounted for 49% of the 37 species identified and 97% of the individuals, and species from the sub-Antarctic region constituted 30% of the identifications. The typically tropical sooty tern (Onychoprion fuscata) was the dominant species during all cruises, and overall accounted for 74% of the species observations and 85% of counted birds. Outputs of Generalised Linear Models at the scale of the Mozambique Channel suggested that higher densities of flying and feeding birds occurred in areas with lower sea surface temperatures and lower surface chlorophyll a concentrations. Most of the flocks of feeding birds did not associate with surface schools of fish or marine mammals, but when they did, these flocks were larger, especially when associated with tuna. While tropical species seemed to favour cyclonic eddies, frontal and divergence zones, non-tropical species were more frequently recorded over shelf waters. Sooty terns foraged preferentially in cyclonic eddies where zooplankton, micronelcton and tuna schools were abundant. Among other major tropical species, frigatebirds (Fregata spp.) predominated in frontal zones between eddies, where tuna schools also frequently occurred and where geostrophic currents were the strongest. Red-footed boobies (Sula sub) concentrated in divergence zones characterised by low sea level anomalies, low geostrophic currents, and high zooplanlcton biomass close to the surface. Our results highlight the importance of mescoscale features in structuring the tropical seabird community in the Mozambique Channel, in addition to segregating tropical and non-tropical species. The mechanisms underlying the segregation of tropical seabirds seem to partially differ from that of other tropical regions, and this may be a consequence of the strong local mesoscale activity, affecting prey size and availability schemes. Beyond characterising the foraging habitats of the seabird community of the Mozambique Channel, this study highlights the importance of this region as a hot spot for seabirds; especially the southern part, where several endangered sub-Antarctic species over-winter.

Résumé: The southern bluefin tuna (SBT, Thunnus maccoyii) is an ecologically and economically valuable fish. However, surprisingly little is known about its critical early life history, a period when mortality is several orders of magnitude higher than at any other life stage, and when larvae are highly sensitive to environmental conditions. Ocean fronts can be important in creating favourable spawning conditions, as they are a convergence of water masses with different properties that can concentrate planktonic particles and lead to enhanced productivity. In this study, we examine the front activity within the only region where SBT have been observed to spawn: the tropical southeast Indian Ocean between Indonesia and Australia (10 degrees S-20 degrees S, 105 degrees E-125 degrees E). We investigate front activity and its relationship to ocean dynamics and surface features of the region. Results are also presented for the entire Indian Ocean (30 degrees N-45 degrees S, 20 degrees E-140 degrees E) to provide a background context. We use an extension of the Cayula and Cornillon algorithm to detect ocean fronts from satellite images of sea surface temperature (SST) and chlorophyll-a concentration (chl-a). Front occurrence represents the probability of occurrence of a front at each pixel of an image. Front intensity represents the magnitude of the difference between the two water masses that make up a front. Relative to the rest of the Indian Ocean, both SST and chl-a fronts in the offshore spawning region are persistent in occurrence and weak in intensity. Front occurrence and intensity along the Australian coast are high, with persistent and intense fronts found along the northwest and west coasts. Fronts in the tropical southeast Indian Ocean are shown to have strong annual variability and some moderate interannual variability. SST front occurrence is found to lead the Southern Oscillation Index by one year, potentially linked to warming and wind anomalies in the Indian Ocean. The surface ocean characteristics of the offshore SBT spawning region are found to be particularly stable compared to the rest of the Indian Ocean in terms of stable SST, low eddy kinetic energy, i.e., low mesoscale eddy activity, and low chl-a. However, this region has high front occurrence, but low front intensity of both SST and chl-a fronts. The potential impact of these oceanic features for SBT spawning is discussed.

Résumé: The use of fish aggregating devices (FADs) by purse seine fisheries has come under increasing criticism for its potential deleterious impacts on tuna stocks, for high levels of by-catch and threats to the biodiversity of tropical pelagic ecosystems. Here, we review the current state of scientific knowledge of this fishing technique and current management strategies. Our intent is to encourage objective discussion of the topic and highlight areas worthy of future research. We show that catching juvenile tuna around FADs does not necessarily result in overfishing of stocks, although more selective fishing techniques would likely help obtain higher yield. Levels of non-tuna by-catch are comparable to or less than in other commercial tuna fisheries and are primarily comprised of species that are not considered threatened. Accordingly, to minimize impacts on ecosystem balance, there is merit in considering that all species captured in purse seine fisheries (excluding vulnerable species such as turtles and sharks) should be retained, but the consequences of such a measure should be carefully examined before implementation. The take of vulnerable species could be further reduced by introduction of additional mitigation measures, but their potential benefits would be limited without parallel efforts with other gears. Finally, there is no unequivocal empirical evidence that FADs represent an ‘ecological trap’ that inherently disrupts tuna biology although further research should focus on this issue. We encourage RFMOs to expand and improve their FAD management plans. Under appropriate management regimes, FAD fishing could be an ecologically and economically sensible fishing method.

Résumé: Tropical tunas associate with objects floating at the surface of the ocean, a behavior widely exploited by fishers. However, the respective roles played by environmental variables and behavioral processes (e.g., social behavior) in the formation of these aggregations remain elusive. To investigate the role of social behavior in the dynamics of such aggregations, we used the binary choice approach. The experimental design comprised two close and identical anchored fish aggregating devices (FADS) equipped with an echo sounder buoy to monitor the aggregated biomass of tuna under each device. Analysis of the results entailed characterizing whether the aggregated biomass is distributed asymmetrically (indicative of social behavior playing a role in the dynamics) or symmetrically between the two close and identical FADs, and comparing the results with theoretical distributions based on different definitions of basic units (individual fish or small schools). The results suggest that social interactions underlie aggregation processes, which represents a major advance in our understanding of these aggregations, a priority for science-based fishery management. While recognizing the logistical and technical constraints, we encourage the development of experimental studies (e.g., in which animals are presented with controlled situations) to enhance our understanding of the behavior of large pelagic fish.

Résumé: Atlantic bluefin tuna Thunnus thynnus (ABFT) is a fish of high market value which has recently become strongly overexploited, notably in the Mediterranean Sea. This area is an essential habitat for ABFT reproduction and growth. We present here an approach for deriving the daily mapping of potential ABFT feeding and spawning habitats based on satellite-derived sea surface temperature (SST) and chl a concentration. The feeding habitat was mainly derived from the simultaneous occurrence of oceanic fronts of temperature and chl a content while the spawning habitat was mostly inferred from the heating of surface waters. Generally, higher chl a contents were found to be preferred for the feeding habitat and a minimum SST value was found for the spawning habitat. Both habitats were defined by the presence of relevant oceanographic features and are therefore potential and functionally-linked habitats. This approach provides, for the first time, a synoptic view of the potential ABFT habitats in the Mediterranean Sea. The model performs well in areas where both satellite data and ABFT observations are available, as 80% of presence data are in the vicinity of potential habitats. The computed monthly, seasonal and annual maps of potential feeding and spawning habitat of ABFT from 2003 to 2009 are in good agreement with current knowledge on ABFT. Overall, the habitat size of ABFT is about 6% of the Mediterranean Sea surface. The results displayed a strong seasonality in habitat size and locations as well as high year-to-year variations (30 to 60%), particularly for the potential spawning habitat, which is key information for evaluating the utility of ABFT Marine Protected Areas in the Mediterranean Sea.

Résumé: Time-area closures have become a frequently used tool to control fishing effort and protect feeding and spawning areas. However, because time-area closure strata are mainly based on biological and ecological considerations, and do not accounts for fishermen's behavior-at-sea, this type of regulation tool may not entirely achieve its objectives. With the aim of comparing the impact of two different time-area regulations: (1) a moratorium on Fish Aggregating Devices (FAD) sets (1997-2005) and (2) a no-take area for surface fleets (2005-2010) on the dynamics of the European (EU) tuna purse seine fleet operating in the eastern tropical Atlantic, several fishery indicators were evaluated through a Before-After, Control-Impact (BACI) approach. The results showed that prior to any regulation, the fleet used to be concentrated within the Gulf of Guinea area. During the first years of the moratorium on FAD (from November to January within a large region in the eastern Atlantic) there was a movement towards outside the protected area, increasing the total sets on FAD (restricted fishing activity). In general, this moratorium fulfilled its objectives; however, it was not respected during the last years of this regulation. The no-take time-area closure restricted all tuna catches for the surface fisheries but only in November and within a small area (i.e., the Picolo zone). As a result, there was an increase in activities on free schools outside the no-take area. Our findings suggest the use of some simple fishery indicators to understand fleet dynamics as a complement of ecological information before implementing new time area closures. Furthermore, since tunas are highly mobile species, anticipating the possible re-allocation of effort of purse seiners to adjacent areas in response to the spatial regulation is required to design different candidate time-area closures and to evaluate their effectiveness to protect juvenile tunas.

Résumé: Because tropical tunas are known to aggregate around floating objects, it has been suggested that the large number of drifting fish aggregating devices (FADS) built and deployed by purse seiners could act as an 'ecological trap'. This hypothesis states that these networks of drifting FADS could take fish to areas where they would not normally go or retain them in places that they would otherwise leave. Because the ecological trap hypothesis was first advanced for drifting FADs, some have argued that only studies using drifting FADs can test this hypothesis. However, because working with drifting FADs is difficult, accepting this precept would preclude the scientific community from providing urgently needed information to organizations charged with management of fisheries that exploit drifting FADs. We argue that because both anchored and drifting FADs alter the natural environment, the more easily accessible anchored FADs can be used to test the ecological trap hypothesis. Also, based on a comparative scientific approach, we argue that understanding the behaviour of tunas around anchored FADs can improve our general understanding of tunas around all types of floating objects and help design new, well focused studies for drifting FADs. As anchored FADs are easier to access and offer a greater potential for research, we encourage scientists to design and conduct studies (in particular on the behaviour of fish at FADS) around the moored structures.

Résumé: Many small island states have developed economies that are strongly dependent on tuna fisheries. Consequently, they are vulnerable to the socio-economic effects of climate change and variability, processes that are known to impact tuna fisheries distribution and productivity. The aim of this study was to assess the impacts of climate oscillations on the tuna-dependent economy of Seychelles. Using a multiplier approach, the direct, indirect and induced economic effects of the tuna industry expenditure benefiting the Seychelles' economy declined in 1998 by 58, 26 and 35%, respectively (mean decline: 42%), a year of strong climate oscillation in the western Indian Ocean. Multivariate patterns in tuna purse-seine vessel expenditures in port were substantially modified by strong climate oscillations, particularly in 1998. A cointegration time-series model predicted that a 40% decline in tuna landings and transhipment in Port Victoria, a value commensurate with that observed in 1998, would result in a 34% loss for the local economy solely through reductions in cargo handling expenditures. Of several indices tested, the Indian Oscillation Index was best at predicting the probability of switching between low and high regimes of landings and transhipment, which translate into impacts for the economy. It is hypothesised that a late 2006/early 2007 climate oscillation was compounded by prior overfishing to produce a stronger impact on the fishery and economy of Seychelles. The effects of fishing and climate variability on tuna fisheries are complex and pose significant challenges for fisheries management and the economic development of countries in the Indian Ocean.

Résumé: The patterns of variations in fisheries time series are known to result from a complex combination of species and fisheries dynamics all coupled with environmental forcing (including climate, trophic interactions, etc.). Disentangling the relative effects of these factors has been a major goal of fisheries science for both conceptual and management reasons. By examining the variability of 169 tuna and billfish time series of catch and catch per unit effort (CPUE) throughout the Atlantic as well as their linkage to the North Atlantic Oscillation (NAO), we find that the importance of these factors differed according to the spatial scale. At the scale of the entire Atlantic the patterns of variations are primarily spatially structured, whereas at a more regional scale the patterns of variations were primarily related to the fishing gear. Furthermore, the NAO appeared to also structure the patterns of variations of tuna time series, especially over the North Atlantic. We conclude that the patterns of variations in fisheries time series of tuna and billfish only poorly reflect the underlying dynamics of these fish populations; they appear to be shaped by several successive embedded processes, each interacting with each other. Our results emphasize the necessity for scientific data when investigating the population dynamics of large pelagic fishes, because CPUE fluctuations are not directly attributable to change in species' abundance.