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Amemou, H., Kone, V., Aman, A., & Lett, C. (2020). Assessment of a Lagrangian model using trajectories of oceanographic drifters and fishing devices in the Tropical Atlantic Ocean. Prog. Oceanogr., 188, 102426.
Résumé: In the Tropical Atlantic Ocean, we assessed the accuracy of a Lagrangian model (Ichthyop) forced with velocity fields from a hydrodynamical model (CROCO) and two different remote sensing products (GlobCurrent and OSCAR) using trajectories of oceanographic drifters. Additionally, we evaluated the possibility to expand the drifters data using trajectories of GPS-buoy equipped drifting Fish Aggregating Devices (FADs). The observed and simulated trajectories were compared in terms of spatial distribution, velocity distribution and a nondimensional skill score. For the drifters and FADs, the GlobCurrent and OSCAR products lead to similar performances as the CROCO model-ouputs in the broad studied domain. In the Gulf of Guinea, however, the CROCO model performed significantly better than the other two because the parent solution of CROCO benefited from its communication with a child grid of finer resolution in this region. On average, the simulations lead to an underestimation of the drifter and FAD velocities, likely because the spatial resolutions of the forcing products were insufficient and the time frequency at which they were produced were too low to resolve the relevant oceanic processes properly. We found a low skill for all models to simulate FAD trajectories, possibly because of the devices vertical structure that prevent FADs from drifting like water parcels. Our results therefore suggest that in the Tropical Atlantic the FAD dataset may not be appropriate to use for corroborating Lagrangian simulations.
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BAUER, R., Graewe, U., Stepputtis, D., Zimmermann, C., & Hammer, C. (2014). Identifying the location and importance of spawning sites of Western Baltic herring using a particle backtracking model. Ices Journal Of Marine Science, 71(3), 499–509.
Résumé: The recruitment success of some herring stocks fluctuates strongly, and apparently, success is often already determined during the early life stages, i.e. before metamorphosis. In studying the survival of early life stages and its affecting factors, particularly those during the egg stage, it is crucial to examine the processes at the spawning sites, which often cannot be explored directly. A recent decline in the recruitment of Western Baltic spring-spawning herring (WBSSH) increases the urgency of filling the knowledge gap for this stock, especially because one bottleneck in the recruitment seems to occur before hatching. We examined the successful 20032009 spawning sites of WBSSH in the main spawning ground, the Greifswalder Bodden lagoon. Instead of using common techniques such as diving or underwater videography, which are usually unsuitable for mapping large areas, we applied a model approach. We tracked herring larvae at length 610 mm, recorded by larval surveys during MarchJune of the respective years, back to their hatching sites using a Lagrangian particle backtracking model. We compared the spawning areas identified by the model with the results of earlier field studies; however, we also analysed variations between years, larval length groups, and different applied growth models, which are needed to define hatch-dates. Although spawning sites could not be identified with high precision because of the strong diffusion in the area studied, results indicate that larvae up to 10 mm length are caught near their hatching sites. However, the location of successful spawning sites varied largely between years, with the main hatching sites situated in the Strelasund and the eastern entrance of the lagoon. This may reflect variations in spawning-site selection or quality. A better knowledge of the locations and relative importance of, and the processes occurring on, the different spawning sites will provide an important contribution to the sustainable management of this commercially valuable herring stock.
Mots-Clés: backtracking; Baltic Sea; Clupea harengus; hatching sites; lagoon; larval transport; spring spawning
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Benazzouz, A., Pelegri, J. L., Demarcq, H., Machin, F., Mason, E., Orbi, A., et al. (2014). On the temporal memory of coastal upwelling off NW Africa. J. Geophys. Res.-Oceans, 119(9), 6356–6380.
Résumé: We use a combination of satellite, in situ, and numerical data to provide a comprehensive view of the seasonal coastal upwelling cycle off NW Africa in terms of both wind forcing and sea surface temperature (SST) response. Wind forcing is expressed in terms of both instantaneous (local) and time-integrated (nonlocal) indices, and the ocean response is expressed as the SST difference between coastal and offshore waters. The classical local index, the cross-shore Ekman transport, reproduces reasonably well the time-latitude distribution of SST differences but with significant time lags at latitudes higher than Cape Blanc. Two nonlocal indices are examined. One of them, a cumulative index calculated as the backward averaged Ekman transport that provides the highest correlation with SST differences, reproduces well the timing of the SST differences at all latitudes (except near Cape Blanc). The corresponding time lags are close to zero south of Cape Blanc and range between 2 and 4 months at latitudes between Cape Blanc and the southern Gulf of Cadiz. The results are interpreted based on calculations of spatial and temporal auto and cross correlations for wind forcing and SST differences. At temporal scales of 2-3 weeks, the alongshore advection of alongshore momentum compensates for interfacial friction, allowing the upwelling jet and associated frontal system to remain active. We conclude that the coastal jet plays a key role in maintaining the structure of coastal upwelling, even at times of relaxed winds, by introducing a seasonal memory to the system in accordance with the atmospheric-forcing annual cycle.
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Blondeau-Bidet, E., Hiroi, J., & Lorin-Nebel, C. (2019). Ion uptake pathways in European sea bass Dicentrarchus labrax. Gene, 692, 126–137.
Résumé: Ion uptake mechanisms are diverse in fish species, certainly linked to duplication events that have led to the presence of a multitude of paralogous genes. In fish, Na+ uptake involves several ion transporters expressed in different ionocyte subtypes. In the European sea bass Dicentrarchus labrax, several key transporters potentially involved in Na+ uptake have been investigated in seawater (SW) and following a 2 weeks freshwater (FW) acclimation. Using gel electrophoresis, we have shown that the Na+/H+-exchanger 3 (nhe3, slc9a3) is expressed in gills and kidney at both salinities. Quantitative realtime PCR analysis showed a significantly higher nhe3 expression in fresh water (FW) compared to SW. Its apical localization in a subset of gill ionocytes in freshwater-acclimated fish supports the role of NHE3 in Na+ uptake. Interestingly, NHE3-immunopositive cells also express basolateral Na+/K+/2Cl− cotransporter 1 (NKCC1) and are mainly localized in gill lamella. Among the three nhe2 (slc9a2) paralogs, only nhe2c shows differential branchial expression levels with higher mRNA levels in SW than in FW. The increased branchial expression of the ammonia transporter rhcg1 (Rhesus protein), nhe3 and cytoplasmic carbonic anhydrase (cac) in FW could indicate the presence of a functional coupling between ion transporters to form a Na+/NH4+ exchange complex. Acid-sensing ion channel 4 (asic4) seems not to be expressed in sea bass gills. Na+/Cl- cotransporter (ncc2a or ncc-like) is about three times more expressed in FW compared to SW suggesting coupled Na+ and Cl− uptake in a subset of gill ionocytes. Besides the main pump Na+/K+-ATPase, branchial NCC2a and NHE3 may be key players in ion uptake in sea bass following a long-term freshwater challenge.
Mots-Clés: Ion transporters; Na uptake; Ncc2; Nhe3; Osmoregulation; Teleost
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Boudour-Boucheker, N., Boulo, V., Charmantier-Daures, M., Anger, K., Charmantier, G., & Lorin-Nebel, C. (2016). Osmoregulation in larvae and juveniles of two recently separated Macrobrachium species: Expression patterns of ion transporter genes. Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology, 195, 39–45.
Résumé: In this comparative study, osmoregulatory mechanisms were analyzed in two closely related species of palaemonid shrimp from Brazil, Macrobrachium pantanalense and Macrobrachium amazonicum. A previous investigation showed that all postembryonic stages of M. pantanalense from inland waters of the Pantanal are able to hyper-osmoregulate in fresh water, while this species was not able to hypo-osmoregulate at high salinities. In M. amazonicum originating from the Amazon estuary, in contrast, all stages are able to hypo-osmoregulate, but only first-stage larvae, late juveniles and adults are able to hyper-osmoregulate in fresh water. The underlying molecular mechanisms of these physiological differences have not been known. We therefore investigated the expression patterns of three ion transporters (NKA α-subunit, VHA B-subunit and NHE3) following differential salinity acclimation in different ontogenetic stages (stage-V larvae, juveniles) of both species. Larval NKAα expression was at both salinities significantly higher in M. pantanalense than in M. amazonicum, whereas no difference was noted in juveniles. VHA was also more expressed in larvae of M. pantanalense than in those of M. amazonicum. When NHE3 expression is compared between the larvae of the two species, further salinity-related differences were observed, with generally higher expression in the inland species. Overall, a high expression of ion pumps in M. pantanalense suggests an evolutionary key role of these transporters in freshwater invasion.
Mots-Clés: Branchial chamber; Crustaceans; Na+/K+-ATPase; NHE3 transporter; Salinity; V-type H+-ATPase
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