Résumé: Anchovy (Engraulis ringens) is the most important exploited fish species in the Northern Humboldt Current System (NHCS) off Peru. This species, as well as most other pelagic resources, mainly forage on zooplankton. The NHCS is bottom-up controlled at a variety of scales. Therefore, fish biomass is driven by the abundance of their prey. In this context, we studied the spatiotemporal patterns of zooplankton biomass in the NHCS from 1961-2012. Data were collected with Hensen net all along the Peruvian coast. To transform zooplankton biovolume into biomass we used a regression that was calibrated from 145 zooplankton samples collected during four surveys and, for which, precise information was available on both biovolume and wet weight. The regression model was then applied on a time-series encompassing 158 cruises performed by the Peruvian Institute of the Sea (IMARPE) between 1961 and 2012. We observed a clear multidecadal pattern and two regime shifts, in 1973 and 1992. Maximum biomass occurred between 1961 and 1973 (61.5 g m(-2)). The lowest biomass (17.8 g m(-2)) occurred between 1974 and 1992. Finally, the biomass increased after 1993 (26.6 g m(-2)) but without reaching the levels observed before 1973. A seasonal pattern was observed with significantly more biomass in spring than in other seasons. Spatially, zooplankton biomass was higher offshore and in northern and southern Peru. Interestingly, the zooplankton sampling was performed using classic zooplankton net that are well fitted to mesozooplankton and are known to underestimate the macrozooplankton; however, the spatiotemporal patterns we observed are consistent with those of macrozooplankton, in particular euphausiids. This suggests that in the NHCS, when and where macrozooplankton dominates it also dominates the biomass obtained using classic zooplankton net samples. Finally, until now, in the NHCS only time-series on zooplankton biovolume were available. The biomass data we provide are more directly usable in trophic or end-to-end models.

Résumé: Ecological intensification is a new concept in agriculture that addresses the double challenge of maintaining a level of production sufficient to support needs of human populations and respecting the environment in order to conserve the natural world and human quality of life. This article adapts this concept to fish farming using agroecological principles and the ecosystem services framework. The method was developed from the study of published literature and applications at four study sites chosen for their differences in production intensity: polyculture ponds in France, integrated pig and pond polyculture in Brazil, the culture of striped catfish in Indonesia and a recirculating salmon aquaculture system in France. The study of stakeholders' perceptions of ecosystem services combined with environmental assessment through Life Cycle Assessment and Emergy accounting allowed development of an assessment tool that was used as a basis for co-building evolution scenarios. From this experience, ecological intensification of aquaculture was defined as the use of ecological processes and functions to increase productivity, strengthen ecosystem services and decrease disservices. It is based on aquaecosystem and biodiversity management and the use of local and traditional knowledge. Expected consequences for farming systems consist of greater autonomy, efficiency and better integration into their surrounding territories. Ecological intensification requires territorial governance and helps improve it from a sustainable development perspective.

Résumé: We have applied a global analytical approach to uncultured Archaea that for the first time reveals well-defined community patterns along broad environmental gradients and habitat types. Phylogenetic patterns and the environmental factors governing the creation and maintenance of these patterns were analyzed for c. 2000 archaeal 16S rRNA gene sequences from 67 globally distributed studies. The sequences were dereplicated at 97% identity, grouped into seven habitat types, and analyzed with both Unifrac (to explore shared phylogenetic history) and multivariate regression tree (that considers the relative abundance of the lineages or taxa) approaches. Both phylogenetic and taxon-based approaches showed salinity and not temperature as one of the principal driving forces at the global scale. Hydrothermal vents and planktonic freshwater habitats emerged as the largest reservoirs of archaeal diversity and consequently are promising environments for the discovery of new archaeal lineages. Conversely, soils were more phylogenetically clustered and archaeal diversity was the result of a high number of closely related phylotypes rather than different lineages. Applying the ecological concept of 'indicator species', we detected up to 13 indicator archaeal lineages for the seven habitats prospected. Some of these lineages (that is, hypersaline MSBL1, marine sediment FCG1 and freshwater plSA1), for which ecological importance has remained unseen to date, deserve further attention as they represent potential key archaeal groups in terms of distribution and ecological processes. Hydrothermal vents held the highest number of indicator lineages, suggesting it would be the earliest habitat colonized by Archaea. Overall, our approach provided ecological support for the often arbitrary nomenclature within uncultured Archaea, as well as phylogeographical clues on key ecological and evolutionary aspects of archaeal biology.