|
|
Becheler, R., Cassone, A. - L., Noel, P., Mouchel, O., Morrison, C. L., & Arnaud-Haond, S. (2017). Low incidence of clonality in cold water corals revealed through the novel use of a standardized protocol adapted to deep sea sampling. Deep-Sea Res. Part II-Top. Stud. Oceanogr., 145, 120–130.
Résumé: Sampling in the deep sea is a technical challenge, which has hindered the acquisition of robust datasets that are necessary to determine the fine-grained biological patterns and processes that may shape genetic diversity. Estimates of the extent of clonality in deep-sea species, despite the importance of clonality in shaping the local dynamics and evolutionary trajectories, have been largely obscured by such limitations. Cold-water coral reefs along European margins are formed mainly by two reef-building species, Lophelia pertusa and Madrepora oculata. Here we present a fine-grained analysis of the genotypic and genetic composition of reefs occurring in the Bay of Biscay, based on an innovative deep-sea sampling protocol. This strategy was designed to be standardized, random, and allowed the georeferencing of all sampled colonies. Clonal lineages discriminated through their Multi-Locus Genotypes (MLG) at 6-7 microsatellite markers could thus be mapped to assess the level of clonality and the spatial spread of clonal lineages. High values of clonal richness were observed for both species across all sites suggesting a limited occurrence of clonality, which likely originated through fragmentation. Additionally, spatial autocorrelation analysis underlined the possible occurrence of fine-grained genetic structure in several populations of both L. pertusa and M. oculata. The two cold-water coral species examined had contrasting patterns of connectivity among canyons, with among-canyon genetic structuring detected in M. oculata, whereas L. pertusa was panmictic at the canyon scale. This study exemplifies that a standardized, random and georeferenced sampling strategy, while challenging, can be applied in the deep sea, and associated benefits outlined here include improved estimates of fine grained patterns of clonality and dispersal that are comparable across sites and among species.
|
|
|
|
Bertrand, A., Habasque, J., Hattab, T., Hintzen, N. T., Oliveros-Ramos, R., Gutierrez, M., et al. (2016). 3-D habitat suitability of jack mackerel Trachurus murphyi in the Southeastern Pacific, a comprehensive study. Prog. Oceanogr., 146, 199–211.
Résumé: South Pacific jack mackerel, Trachurus murphyi, has an ocean-scale distribution, from the South American coastline to New Zealand and Tasmania. This fish, captured by Humans since the Holocene, is nowadays heavily exploited and its population has decreased substantially since the mid-1990s. The uncertainty associated to jack mackerel population structure currently hampers management. Several hypotheses have been proposed from a single population up to several discrete populations. Still no.definitive answer was given. Determining how environmental conditions drive jack mackerel distribution can provide insights on its population structure. To do so, here we performed in three steps. First, we used satellite data to develop a statistical model of jack mackerel horizontal habitat suitability. Model predictions based on interaction between temperature and chlorophyll-a match the observed jack mackerel distribution, even during extreme El Nino event. Second, we studied the impact of oxygen and show that jack mackerel distribution and abundance is correlated to oxygen over a wide variety of scales and avoid low oxygen areas and periods. Third, on the basis of the above we built a conceptual 3D model of jack mackerel habitat in the Southeastern Pacific. We reveal the presence of a low suitable habitat along the Chilean and Peruvian coast, figuratively presenting a closed door caused by a gap in the horizontal habitat at 19-22 S and a shallow oxycline off south-centre Peru. This kind of situation likely occurs on a seasonal basis, in austral summer but also at longer temporal scales. A lack of exchanges at some periods/seasons partially isolate jack mackerel distributed off Peru. On the other hand the continuity in the habitat during most of the year explains why exchanges occur. We conclude that the more likely population structure for jack mackerel is a pelagic metapopulation. (C) 2016 Elsevier Ltd. All rights reserved.
|
|
|
|
Brophy, D., Haynes, P., Arrizabalaga, H., Fraile, I., Fromentin, J. - M., Garibaldi, F., et al. (2016). Otolith shape variation provides a marker of stock origin for north Atlantic bluefin tuna (Thunnus thynnus). Mar. Freshw. Res., 67(7), 1023–1036.
Résumé: Two stocks of bluefin tuna (Thunnus thynnus) inhabit the north Atlantic; the western and eastern stocks spawn in the Gulf of Mexico and the Mediterranean Sea respectively. Trans-Atlantic movements occur outside spawning time whereas natal homing maintains stock structure. Commercial fisheries may exploit a mixed assemblage of both stocks. The incorporation of mixing rates into stock assessment is precluded by uncertainties surrounding stock discrimination. Otolith shape descriptors were used to characterise western and eastern stocks of Atlantic bluefin tuna in the present study and to estimate stock composition in catches of unknown origin. Otolith shape varied with length and between locations and years. Within a restricted size range (200-297-cm fork length (FL)) the two stocks were distinguished with an accuracy of 83%. Bayesian stock mixture analysis indicated that samples from the east Atlantic and Mediterranean were predominantly of eastern origin. The proportion assigned to the eastern stock showed slight spatial variation; however, overlapping 95% credible intervals indicated no significant difference (200-297 cm FL: central Atlantic, 73-100%; Straits of Gibraltar, 73-100%; Morocco, 50-99%; Portugal 64-100%). Otolith shape could be used in combination with other population markers to improve the accuracy of mixing rate estimates for Atlantic bluefin tuna.
|
|
|
|
Dalongeville, A., Andrello, M., Mouillot, D., Lobreaux, S., Fortin, M. - J., Lasram, F., et al. (2018). Geographic isolation and larval dispersal shape seascape genetic patterns differently according to spatial scale. Evol. Appl., 11(8), 1437–1447.
Résumé: Genetic variation, as a basis of evolutionary change, allows species to adapt and persist in different climates and environments. Yet, a comprehensive assessment of the drivers of genetic variation at different spatial scales is still missing in marine ecosystems. Here, we investigated the influence of environment, geographic isolation, and larval dispersal on the variation in allele frequencies, using an extensive spatial sampling (47 locations) of the striped red mullet (Mullus surmuletus) in the Mediterranean Sea. Univariate multiple regressions were used to test the influence of environment (salinity and temperature), geographic isolation, and larval dispersal on single nucleotide polymorphism (SNP) allele frequencies. We used Moran's eigenvector maps (db-MEMs) and asymmetric eigenvector maps (AEMs) to decompose geographic and dispersal distances in predictors representing different spatial scales. We found that salinity and temperature had only a weak effect on the variation in allele frequencies. Our results revealed the predominance of geographic isolation to explain variation in allele frequencies at large spatial scale (>1,000km), while larval dispersal was the major predictor at smaller spatial scale (<1,000km). Our findings stress the importance of including spatial scales to understand the drivers of spatial genetic variation. We suggest that larval dispersal allows to maintain gene flows at small to intermediate scale, while at broad scale, genetic variation may be mostly shaped by adult mobility, demographic history, or multigenerational stepping-stone dispersal. These findings bring out important spatial scale considerations to account for in the design of a protected area network that would efficiently enhance protection and persistence capacity of marine species.
|
|
|
|
Espinosa, F., & Rivera-Ingraham, G. A. (2017). Biological Conservation of Giant Limpets: The Implications of Large Size. In B. E. Curry (Ed.), (pp. 105–155). Advances in Marine Biology, Vol 76, 76. San Diego: Elsevier Academic Press Inc.
Résumé: Patellogastropods, also known as true limpets, are distributed throughout the world and constitute key species in coastal ecosystems. Some limpet species achieve remarkable sizes, which in the most extreme cases can surpass 35 cm in shell length. In this review, we focus on giant limpets, which are defined as those with a maximum shell size surpassing 10 cm. According to the scientific literature, there are a total of 14 species across five genera that reach these larger sizes. Four of these species are threatened or in danger of extinction. Inhabiting the intertidal zones, limpets are frequently affected by anthropogenic impacts, namely collection by humans, pollution and habitat fragmentation. In the case of larger species, their conspicuous size has made them especially prone to human collection since prehistoric times. Size is not phylogeny-dependent among giant limpets, but is instead related to behavioural traits instead. Larger-sized species tend to be nonmigratory and territorial compared to those that are smaller. Collection by humans has been cited as the main cause behind the decline and/or extinction of giant limpet populations. Their conspicuously large size makes them the preferred target of human collection. Because they are protandric species, selectively eliminating larger specimens of a given population seriously compromises their viability and has led to local extinction events in some cases. Additionally, sustained collection over time may lead to microevolutionary responses that result in genetic changes. The growing presence of artificial structures in coastal ecosystems may cause population fragmentation and isolation, limiting the genetic flow and dispersion capacity of many limpet species. However, when they are necessitated, artificial structures could be managed to establish marine artificial microreserves and contribute to the conservation of giant limpet species that naturally settle on them.
|
|
