2019

Aubin, J., et al. "Implementing ecological intensification in fish farming: definition and principles from contrasting experiences." Rev. Aquac.. 11.1 (2019): 149–167.
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Cruaud, P., et al. "Ecophysiological differences between vesicomyid species and metabolic capabilities of their symbionts influence distribution patterns of the deep-sea clams." Mar. Ecol.-Evol. Persp.. 40.3 (2019): e12541.
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Jordani, M. X., et al. "Intraspecific and interspecific trait variability in tadpole meta-communities from the Brazilian Atlantic rainforest." Ecol. Evol.. 9.7 (2019): 4025–4037.
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Lembrechts, J. J., et al. "Comparing temperature data sources for use in species distribution models: From in-situ logging to remote sensing." Glob. Ecol. Biogeogr. (2019).
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M'Rabet, C., et al. "Consequences of a contaminant mixture of bisphenol A (BPA) and di-(2-ethylhexyl) phthalate (DEHP), two plastic-derived chemicals, on the diversity of coastal phytoplankton." Mar. Pollut. Bull.. 138 (2019): 385–396.
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Su, G., S. Villeger, and S. Brosse. "Morphological diversity of freshwater fishes differs between realms, but morphologically extreme species are widespread." Glob. Ecol. Biogeogr.. 28.2 (2019): 211–221.
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Thoha, H., et al. "Resting cyst distribution and molecular identification of the harmful dinoflagellate Margalefidinium polykrikoides (Gymnodiniales, Dinophyceae) in Lampung Bay, Sumatra, Indonesia." Front. Microbiol.. 10 (2019).
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2018

Aubert, A., et al. "No more reason for ignoring gelatinous zooplankton in ecosystem assessment and marine management: Concrete cost-effective methodology during routine fishery trawl surveys." Mar. Pol.. 89 (2018): 100–108.
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Aubin, J., et al. "Blue mussel (Mytilus edulis) bouchot culture in Mont-St Michel Bay: potential mitigation effects on climate change and eutrophication." Int. J. Life Cycle Assess.. 23.5 (2018): 1030–1041.
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Avadi, A., et al. "Environmental assessment of the Peruvian industrial hake fishery with LCA." Int. J. Life Cycle Assess.. 23.5 (2018): 1126–1140.
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Ba, K., et al. "Long-term fishing impact on the Senegalese coastal demersal resources: diagnosing from stock assessment models." Aquat. Living Resour.. 31 (2018): 8.
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Batsleer, J., et al. "Exploring habitat credits to manage the benthic impact in a mixed fishery." Mar. Ecol.-Prog. Ser.. 586 (2018): 167–179.
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Bodin, N., et al. "Ecological data for western Indian Ocean tuna." Ecology. 99.5 (2018): 1245.
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Bouchoucha, M., et al. "Otolith fingerprints as natural tags to identify juvenile fish life in ports." Estuar. Coast. Shelf Sci.. 212 (2018): 210–218.
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Colin, N., et al. "Functional diversity measures revealed impacts of non-native species and habitat degradation on species-poor freshwater fish assemblages." Sci. Total Environ.. 625 (2018): 861–871.
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Descombes, P., et al. "Linking species diversification to palaeo-environmental changes: A process-based modelling approach." Glob. Ecol. Biogeogr.. 27.2 (2018): 233–244.
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Gaboriau, T., et al. "Influence of the geography of speciation on current patterns of coral reef fish biodiversity across the Indo-Pacific." Ecography. 41.8 (2018): 1295–1306.
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Guerrero, A. M., et al. "Achieving the promise of integration in social-ecological research: a review and prospectus." Ecol. Soc.. 23.3 (2018): 38.
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Hori, M., et al. "Application of the coastal ecosystem complex concept toward integrated management for sustainable coastal fisheries under oligotrophication." Fish. Sci.. 84.2 (2018): 283–292.
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Jacquemot, L., et al. "Therapeutic potential of a new jumbo phage that infects Vibrio coralliilyticus, a widespread coral pathogen." Front. Microbiol.. 9 (2018): 2501.
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Krichen, E., et al. "High biomass density promotes density-dependent microbial growth rate." Biochem. Eng. J.. 130 (2018): 66–75.
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Malauene, B. S., et al. "Impact of offshore eddies on shelf circulation and river plumes of the Sofala Bank, Mozambique Channel." Journal of Marine Systems. 185 (2018): 1–12.
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Maugars, G., et al. "The effects of acute transfer to freshwater on ion transporters of the pharyngeal cavity in European seabass (Dicentrarchus labrax)." Fish Physiol. Biochem.. 44.5 (2018): 1393–1408.
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Mazel, F., et al. "Prioritizing phylogenetic diversity captures functional diversity unreliably." Nat. Commun.. 9 (2018): 2888.
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Ram, P. A. S., et al. "Bacterial-viral interactions in the sea surface microlayer of a black carbon-dominated tropical coastal ecosystem (Halong Bay, Vietnam)." Elementa-Sci. Anthrop.. 6 (2018): 13.
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Reynolds, P. L., et al. "Latitude, temperature, and habitat complexity predict predation pressure in eelgrass beds across the Northern Hemisphere." Ecology. 99.1 (2018): 29–35.
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2017

Becheler, R., et al. "Low incidence of clonality in cold water corals revealed through the novel use of a standardized protocol adapted to deep sea sampling." Deep-Sea Res. Part II-Top. Stud. Oceanogr.. 145 (2017): 120–130.
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Ben Gharbia, H., et al. "New insights on the species-specific allelopathic interactions between macrophytes and marine HAB dinoflagellates." Plos One. 12.11 (2017): e0187963.
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Coll, M., and J. Steenbeek. "Standardized ecological indicators to assess aquatic food webs: The ECOIND software plug-in for Ecopath with Ecosim models." Environ. Modell. Softw.. 89 (2017): 120–130.
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Darling, E. S., et al. "Relationships between structural complexity, coral traits, and reef fish assemblages." Coral Reefs. 36.2 (2017): 561–575.
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Duffy, L. M., et al. "Global trophic ecology of yellowfin, bigeye, and albacore tunas: understanding predation on micronekton communities at ocean-basin scales." Deep Sea Research Part II: Topical Studies in Oceanography. 140 (2017): 55–73.
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Grehan, A. J., et al. "Towards ecosystem based management and monitoring of the deep Mediterranean, North-East Atlantic and Beyond." Deep-Sea Res. Part II-Top. Stud. Oceanogr.. 145 (2017): 1–7.
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Oliveros-Ramos, R., et al. "A sequential approach to calibrate ecosystem models with multiple time series data." Progress in Oceanography. 151 (2017): 227–244.
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Paulino, C., et al. "Use of nighttime visible images in the study of the spatial and temporal variability of fishing areas of jumbo flying squid (Dosidicus gigas) outside Peruvian EEZ 2004-2015." Fish Res.. 191 (2017): 144–153.
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Silva Junior, C. a. B., et al. "Functional diversity of fish in tropical estuaries: A traits-based approach of communities in Pernambuco, Brazil." Estuar. Coast. Shelf Sci.. 198 (2017): 413–420.
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Sirot, C., et al. "elementr: An R package for reducing elemental data from LA-ICPMS analysis of biological calcified structures." Methods Ecol. Evol.. 8.12 (2017): 1659–1667.
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Sirot, C., et al. "Using otolith organic matter to detect diet shifts in Bardiella chrysoura, during a period of environmental changes." Mar. Ecol.-Prog. Ser.. 575 (2017): 137–152.
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2016

Bailleul, D., S. Stoeckel, and S. Arnaud-Haond. "RClone: a package to identify MultiLocus Clonal Lineages and handle clonal data sets in r." Methods Ecol. Evol.. 7.8 (2016): 966–970.
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Ben-Gharbia, H., et al. "Toxicity and Growth Assessments of Three Thermophilic Benthic Dinoflagellates (Ostreopsis cf. ovata, Prorocentrum lima and Coolia monotis) Developing in the Southern Mediterranean Basin." Toxins. 8.10 (2016): 297.
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Boavida, J., et al. "Overlooked habitat of a vulnerable gorgonian revealed in the Mediterranean and Eastern Atlantic by ecological niche modelling." Sci Rep. 6 (2016): 36460.
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Bouvy, M., et al. "Plankton communities in the five Iles Eparses (Western Indian Ocean) considered to be pristine ecosystems." Acta Oecologica (2016): 9–20.
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Brosset, P., et al. "Body reserves mediate trade-offs between life-history traits: new insights from small pelagic fish reproduction." R. Soc. Open Sci.. 3.10 (2016): 160202.
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Coll, M., et al. "Ecological indicators to capture the effects of fishing on biodiversity and conservation status of marine ecosystems." Ecological Indicators. 60 (2016): 947–962.
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Coll, M., et al. "Modelling the cumulative spatial-temporal effects of environmental drivers and fishing in a NW Mediterranean marine ecosystem." Ecol. Model.. 331 (2016): 100–114.
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de Fouw, J., et al. "Drought, Mutualism Breakdown, and Landscape-Scale Degradation of Seagrass Beds." Curr. Biol.. 26.8 (2016): 1051–1056.
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Deininger, A., et al. "Simulated terrestrial runoff triggered a phytoplankton succession and changed seston stoichiometry in coastal lagoon mesocosms." Mar. Environ. Res.. 119 (2016): 40–50.
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Delpy, F., et al. "Identifying the drivers of abundance and size of the invasive ctenophore Mnemiopsis leidyi in Northwestern Mediterranean lagoons." Marine Environmental Research. 119 (2016): 114–125.
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Drouineau, H., et al. "The need for a protean fisheries science to address the degradation of exploited aquatic ecosystems." Aquat. Living Resour.. 29.2 (2016): Unsp-E201.
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Dubois, M., et al. "Linking basin-scale connectivity, oceanography and population dynamics for the conservation and management of marine ecosystems." Glob. Ecol. Biogeogr.. 25.5 (2016): 503–515.
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Dueri, S., et al. "Food security or economic profitability? Projecting the effects of climate and socioeconomic changes on global skipjack tuna fisheries under three management strategies." Global Environmental Change. 41 (2016): 1–12.
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Duponchelle, F., et al. "Trans-Amazonian natal homing in giant catfish." J. Appl. Ecol.. 53.5 (2016): 1511–1520.
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Heymans, J. J., et al. "Best practice in Ecopath with Ecosim food-web models for ecosystem-based management." Ecol. Model.. 331 (2016): 173–184.
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Jacquet, C., et al. "No complexity-stability relationship in empirical ecosystems." Nat. Commun.. 7 (2016): 12573.
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Leprieur, F., et al. "Historical and contemporary determinants of global phylogenetic structure in tropical reef fish faunas." Ecography. 39.9 (2016): 825–835.
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Maire, Eva, et al. "How accessible are coral reefs to people? A global assessment based on travel time." Ecol. Lett.. 19.4 (2016): 351–360.
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Pringault, O., et al. "Consequences of contaminant mixture on the dynamics and functional diversity of bacterioplankton in a southwestern Mediterranean coastal ecosystem." Chemosphere. 144 (2016): 1060–1073.
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Quétel, C., et al. "Iles Eparses (SW Indian Ocean) as reference ecosystems for environmental research." Acta Oecologica (2016): 1–8.
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Rivera-Ingraham, G. A., et al. "Salinity stress from the perspective of the energy-redox axis: Lessons from a marine intertidal flatworm." Redox Biology. 10 (2016): 53–64.
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Toussaint, A., et al. "Global functional diversity of freshwater fish is concentrated in the Neotropics while functional vulnerability is widespread." Sci Rep. 6 (2016): 22125.
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Van Beveren, E., et al. "Can pathogens alter the population dynamics of sardine in the NW Mediterranean?" Mar. Biol.. 163.12 (2016): Unsp-240.
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2015

FU, C., et al. "Relationships among fisheries exploitation, environmental conditions, and ecological indicators across a series of marine ecosystems." Journal of Marine Systems. 148 (2015): 101–111.
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Genovesi, B., et al. "Geographic structure evidenced in the toxic dinoflagellate Alexandrium pacificum Litaker (A. catenella – group IV (Whedon & Kofoid) Balech) along Japanese and Chinese coastal waters." Marine Pollution Bulletin. 98.1–2 (2015): 95–105.
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Joo, R., et al. "Defining fishing spatial strategies from VMS data: Insights from the world's largest monospecific fishery." Fisheries Research. 164 (2015): 223–230.
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Lefort, S., et al. "Spatial and body-size dependent response of marine pelagic communities to projected global climate change." Global Change Biology. 21.1 (2015): 154–164.
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PANTE, E., et al. "Species are hypotheses: avoid connectivity assessments based on pillars of sand." Molecular Ecology. 24.3 (2015): 525–544.
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Réveillon, D., et al. "β-N-methylamino-l-alanine (BMAA) and isomers: Distribution in different food web compartments of Thau lagoon, French Mediterranean Sea." Marine Environmental Research. 110 (2015): 8–18.
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Reygondeau, G., et al. "Progressive changes in the Western English Channel foster a reorganization in the plankton food web." Prog. Oceanogr.. 137 (2015): 524–532.
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Said, O. B., et al. "Changes of benthic bacteria and meiofauna assemblages during bio-treatments of anthracene-contaminated sediments from Bizerta lagoon (Tunisia)." Environ Sci Pollut Res. 22.20 (2015): 15319–15331.
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Valls, A., M. Coll, and V. Christensen. "Keystone species : toward an operational concept for marine biodiversity conservation." Ecological Monographs. 85.1 (2015): 29–47.
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Walker, E., et al. "From forager tracks to prey distributions: an application to tuna vessel monitoring systems (VMS)." Ecological Applications. 25.3 (2015): 826–833.
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Weber, A. A. - T., et al. "Influence of the larval phase on connectivity: strong differences in the genetic structure of brooders and broadcasters in the Ophioderma longicauda species complex." Mol Ecol. 24.24 (2015): 6080–6094.
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2014

Chu, Y., et al. "Spatial and temporal dynamics of bacterial contamination in South France coastal rivers: focus on in-stream processes during low flows and floods." Hydrological Processes. 28.8 (2014): 3300–3313.
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Collos, Y., et al. "Comparing diatom and Alexandrium catenella/tamarense blooms in Thau lagoon: Importance of dissolved organic nitrogen in seasonally N-limited systems." Harmful Algae. 37 (2014): 84–91.
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Cuif, M., et al. "Evaluation of transgenerational isotope labeling of embryonic otoliths in a coral reef damselfish with single and repeated injections of enriched (137)Barium." Journal of Experimental Marine Biology and Ecology. 459 (2014): 151–159.
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Dias, M. S., et al. "Global imprint of historical connectivity on freshwater fish biodiversity." Ecology Letters. 17.9 (2014): 1130–1140.
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Doan, T. T., et al. "Influence of buffalo manure, compost, vermicompost and biochar amendments on bacterial and viral communities in soil and adjacent aquatic systems." Applied Soil Ecology. 73 (2014): 78–86.
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Hadjadji, I., et al. "A comparative analysis of Alexandrium catenella/tamarense blooms in Annaba Bay (Algeria) and Thau lagoon (France); phosphorus limitation as a trigger." Comptes Rendus Biologies. 337.2 (2014): 117–122.
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Pellissier, L., et al. "Quaternary coral reef refugia preserved fish diversity." Science. 344.6187 (2014): 1016–1019.
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Triki, H. Z., et al. "Distribution of resting cysts of the potentially toxic dinoflagellate Alexandrium pseudogonyaulax in recently-deposited sediment within Bizerte Lagoon (Mediterranean coast, Tunisia)." Marine Pollution Bulletin. 84.1-2 (2014): 172–181.
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Valladares, F., et al. "The effects of phenotypic plasticity and local adaptation on forecasts of species range shifts under climate change." Ecology Letters. 17.11 (2014): 1351–1364.
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Zilius, M., et al. "Feedback Mechanisms Between Cyanobacterial Blooms, Transient Hypoxia, and Benthic Phosphorus Regeneration in Shallow Coastal Environments." Estuaries and Coasts. 37.3 (2014): 680–694.
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2013

Amossé, J., et al. "The flows of nitrogen, bacteria and viruses from the soil to water compartments are influenced by earthworm activity and organic fertilization (compost vs. vermicompost)." Soil Biology & Biochemistry. 66 (2013): 197–203.
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BLANCHETON, J. - P., et al. "Insight into bacterial population in aquaculture systems and its implication." Aquacultural Engineering. 53 (2013): 30–39.
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Combe, M., et al. "Freshwater prokaryote and virus communities can adapt to a controlled increase in salinity through changes in their structure and interactions." Estuarine Coastal and Shelf Science. 133 (2013): 58–66.
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De Wit, R., et al. "Conservation of a permanent hypersaline lake: management options evaluated from decadal variability of Coleofasciculus chthonoplastes microbial mats." Aquatic Conservation-Marine and Freshwater Ecosystems. 23.4 (2013): 532–545.
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Gilles, S., et al. "An integrated fish-plankton aquaculture system in brackish water." Animal. 7.2 (2013): 322–329.
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Gravel, D., et al. "Inferring food web structure from predator-prey body size relationships." Methods in Ecology and Evolution. 4.11 (2013): 1083–1090.
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Handegard, N. O., et al. "Towards an acoustic-based coupled observation and modelling system for monitoring and predicting ecosystem dynamics of the open ocean." Fish and Fisheries. 14 (2013): 605–615.
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Hess, P., et al. "Pinnatoxin G is responsible for atypical toxicity in mussels (Mytilus galloprovincialis) and clams (Venerupis decussata) from Ingril, a French Mediterranean lagoon." Toxicon. 75 (2013): 16–26.
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Hobday, A. J., et al. "Climate impacts and oceanic top predators : moving from impacts to adaptation in oceanic systems." Reviews in Fish Biology and Fisheries. 23 (2013): 537–546.
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Lafabrie, C., et al. "Impact of contaminated-sediment resuspension on phytoplankton in the Biguglia lagoon (Corsica, Mediterranean Sea)." Estuarine Coastal and Shelf Science. 130 (2013): 70–80.
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Louati, H., et al. "The roles of biological interactions and pollutant contamination in shaping microbial benthic community structure." Chemosphere. 93.10 (2013): 2535–2546.
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Louati, H., et al. "Microbial community responses to bioremediation treatments for the mitigation of low-dose anthracene in marine coastal sediments of Bizerte lagoon (Tunisia)." Environ Sci Pollut Res. 20.1 (2013): 300–310.
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Rombouts, I., et al. "Food web indicators under the Marine Strategy Framework Directive: From complexity to simplicity?" Ecological Indicators. 29 (2013): 246–254.
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Tournois, J., et al. "Temporal stability of otolith elemental fingerprints discriminates among lagoon nursery habitats." Estuarine Coastal and Shelf Science. 131 (2013): 182–193.
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2012

Ben Othman, H., et al. "Toxicity of benz(a)anthracene and fluoranthene to marine phytoplankton in culture: Does cell size really matter?" J. Hazard. Mater.. 243 (2012): 204–211.
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Carteron, A., et al. "Assessing the efficiency of clustering algorithms and goodness-of-fit measures using phytoplankton field data." Ecol. Inform.. 9 (2012): 64–68.
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Hadjadji, I., et al. "Clonal variation in physiological parameters of Alexandrium tamarense: implications for biological invasions and maintenance." Cah. Biol. Mar.. 53.3 (2012): 357–363.
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Panfili, J., et al. "Habitat residence during continental life of the European eel Anguilla anguilla investigated using linear discriminant analysis applied to otolith Sr:Ca ratios." Aquat. Biol.. 15.2 (2012): 175–185.
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Pringault, O., H. Viret, and R. Duran. "Interactions between Zn and bacteria in marine tropical coastal sediments." Environ. Sci. Pollut. Res.. 19.3 (2012): 879–892.
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2011

Clavier, J., et al. "Aerial and underwater carbon metabolism of a Zostera noltii seagrass bed in the Banc d'Arguin, Mauritania." Aquatic Botany. 95 (2011): 24–30.
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Handegard, N. O., et al. "Toward a global observation and modeling system for studying the ecology of the open ocean using acoustics." The Journal of the Acoustical Society of America. 129.4 (2011): 2700.
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2010

Boukef, I., et al. "Survival of Escherichia coli Strains in Mediterranean Brackish Water in the Bizerte Lagoon in Northern Tunisia." Water Environ Res. 82.11 (2010): 2249–2257.
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Bourgeois, S., S. Hochard, and O. Pringault. "Subtidal microphytobenthos: effects of inorganic and organic compound supplies on migration, production, and respiration in a tropical coastal environment." Aquat. Microb. Ecol.. 61.1 (2010): 13–29.
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Bundy, A., et al. "The good(ish), the bad, and the ugly : a tripartite classification of ecosystem trends." Ices Journal of Marine Science. 67 (2010): 745–768.
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Diaz, E., et al. "Using indicators for evaluating, comparing, and communicating the ecological status of exploited marine ecosystems. 2. Setting the scene." Ices Journal of Marine Science. 67 (2010): 692–716.
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Duboz, R., et al. "Application of an evolutionary algorithm to the inverse parameter estimation of an individual-based model." Ecological Modelling. 221 (2010): 840–849.
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Martins, C. I. M., et al. "New developments in recirculating aquaculture systems in Europe: A perspective on environmental sustainability." Aquacultural Engineering. 43.3 (2010): 83–93.
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Perry, R. I., et al. "Sensitivity of marine systems to climate and fishing: Concepts, issues and management responses." Journal of Marine Systems. 79 (2010): 427–435.
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PLANQUE, B., et al. "How does fishing alter marine populations and ecosystems sensitivity to climate?" Journal of Marine Systems. 79.3-4 (2010): 403–417.
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