2019

Ba, A., et al. "The potential impact of marine protected areas on the Senegalese sardinella fishery." Ocean Coastal Manage.. 169 (2019): 239–246.
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Bănaru, D., et al. "Implementation of an end-to-end model of the Gulf of Lions ecosystem (NW Mediterranean Sea). I. Parameterization, calibration and evaluation." Ecological Modelling. 401 (2019): 1–19.
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Benedetti, F., et al. "Climate change may have minor impact on zooplankton functional diversity in the Mediterranean Sea." Divers. Distrib.. 25.4 (2019): 568–581.
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Bryndum‐Buchholz, A., et al. "Twenty-first-century climate change impacts on marine animal biomass and ecosystem structure across ocean basins." Global Change Biology. 25.2 (2019): 459–472.
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Chary, K., et al. "Modeling sea cage outputs for data-scarce areas: application to red drum (Sciaenops ocellatus) aquaculture in Mayotte, Indian Ocean." Aquacult Int (2019).
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Diaz, F., et al. "Implementation of an end-to-end model of the Gulf of Lions ecosystem (NW Mediterranean Sea). II. Investigating the effects of high trophic levels on nutrients and plankton dynamics and associated feedbacks." Ecological Modelling. 405 (2019): 51–68.
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Fu, C., et al. "Making ecological indicators management ready: Assessing the specificity, sensitivity, and threshold response of ecological indicators." Ecological Indicators. 105 (2019): 16–28.
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Grüss, A., et al. "Building bridges between global information systems on marine organisms and ecosystem models." Ecological Modelling. 398 (2019): 1–19.
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Henckel, L., et al. "On the relative importance of space and environment in farmland bird community assembly." PLoS One. 14.3 (2019): e0213360.
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Lett, C., et al. "Modeling larval dispersal for the gilthead seabream in the northwestern Mediterranean Sea." Marine Environmental Research (2019): 104781.
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Lotze, H. K., et al. "Global ensemble projections reveal trophic amplification of ocean biomass declines with climate change." Pnas. 116.26 (2019): 12907–12912.
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Meddeb, M., et al. "A new type of plankton food web functioning in coastal waters revealed by coupling Monte Carlo Markov chain linear inverse method and ecological network analysis." Ecol. Indic.. 104 (2019): 67–85.
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Moullec, F., et al. "An End-to-End Model Reveals Losers and Winners in a Warming Mediterranean Sea." Front. Mar. Sci.. 6 (2019).
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Moullec, F., et al. "Capturing the big picture of Mediterranean marine biodiversity with an end-to-end model of climate and fishing impacts." Progress in Oceanography. 178 (2019): 102179.
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Sadoul, B., et al. "Prediction of long-term variation in offspring metabolism due to BPA in eggs in rainbow trout using the DEB model." J. Sea Res.. 143 (2019): 222–230.
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2018

Ba, K., et al. "Long-term fishing impact on the Senegalese coastal demersal resources: diagnosing from stock assessment models." Aquat. Living Resour.. 31 (2018): 8.
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Batsleer, J., et al. "Exploring habitat credits to manage the benthic impact in a mixed fishery." Mar. Ecol.-Prog. Ser.. 586 (2018): 167–179.
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Benedetti, F., et al. "Investigating uncertainties in zooplankton composition shifts under climate change scenarios in the Mediterranean Sea." Ecography. 41.2 (2018): 345–360.
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Benedetti, F., et al. "Do functional groups of planktonic copepods differ in their ecological niches?" J. Biogeogr.. 45.3 (2018): 604–616.
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Certain, G., F. Barraquand, and A. Gårdmark. "How do MAR(1) models cope with hidden nonlinearities in ecological dynamics?" Methods in Ecology and Evolution (2018).
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Chary, K., et al. "Cultivating biomass locally or importing it? LCA of biomass provision scenarios for cleaner electricity production in a small tropical island." Biomass Bioenerg.. 110 (2018): 1–12.
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Courbin, N., et al. "Short-term prey field lability constrains individual specialisation in resource selection and foraging site fidelity in a marine predator." Ecol. Lett.. 21.7 (2018): 1043–1054.
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Descombes, P., et al. "Linking species diversification to palaeo-environmental changes: A process-based modelling approach." Glob. Ecol. Biogeogr.. 27.2 (2018): 233–244.
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Helias, A., J. Langlois, and P. Freon. "Fisheries in life cycle assessment: Operational factors for biotic resources depletion." Fish. Fish.. 19.6 (2018): 951–963.
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Hoffle, H., et al. "Linking spawning ground extent to environmental factors – patterns and dispersal during the egg phase of four North Sea fishes." Can. J. Fish. Aquat. Sci.. 75.3 (2018): 357–374.
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Krichen, E., et al. "High biomass density promotes density-dependent microbial growth rate." Biochem. Eng. J.. 130 (2018): 66–75.
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Lefevre, S., D. J. McKenzie, and G. E. Nilsson. "In modelling effects of global warming, invalid assumptions lead to unrealistic projections." Glob. Change Biol.. 24.2 (2018): 553–556.
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Mannocci, L., et al. "Assessing cetacean surveys throughout the Mediterranean Sea: a gap analysis in environmental space." Sci Rep. 8 (2018): 3126.
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Meddeb, M., et al. "Plankton food-web functioning in anthropogenically impacted coastal waters (SW Mediterranean Sea): an ecological network analysis." Progress in Oceanography (2018).
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Ortega-Cisneros, K., et al. "Evaluating the specificity of ecosystem indicators to fishing in a changing environment: A model comparison study for the southern Benguela ecosystem." Ecological Indicators. 95 (2018): 85–98.
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Ramirez-Romero, E., et al. "Quantifying top-down control and ecological traits of the scyphozoan Aurelia aurita through a dynamic plankton model." J. Plankton Res.. 40.6 (2018): 678–692.
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Shin, Y. - J., et al. "The specificity of marine ecological indicators to fishing in the face of environmental change: A multi-model evaluation." Ecological Indicators. 89 (2018): 317–326.
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Skowronek, S., et al. "Transferability of species distribution models for the detection of an invasive alien bryophyte using imaging spectroscopy data." International Journal of Applied Earth Observation and Geoinformation. 68 (2018): 61–72.
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Yates, K. L., et al. "Outstanding Challenges in the Transferability of Ecological Models." Trends Ecol. Evol.. 33.10 (2018): 790–802.
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2017

Abgrall, C., et al. "Shifts and linkages of functional diversity between above- and below-ground compartments along a flooding gradient." Funct. Ecol.. 31.2 (2017): 350–360.
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Authier, M., C. Saraux, and C. Péron. "Variable selection and accurate predictions in habitat modelling: a shrinkage approach." Ecography. 40.4 (2017): 549–560.
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Bender, M. G., et al. "Isolation drives taxonomic and functional nestedness in tropical reef fish faunas." Ecography. 40.3 (2017): 425–435.
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Coll, M., and J. Steenbeek. "Standardized ecological indicators to assess aquatic food webs: The ECOIND software plug-in for Ecopath with Ecosim models." Environ. Modell. Softw.. 89 (2017): 120–130.
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Diankha, O., et al. "Studying the contribution of different fishing gears to the Sardinella small-scale fishery in Senegalese waters." Aquat. Living Resour.. 30 (2017): 27.
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Fiandrino, A., et al. "Spatial patterns in coastal lagoons related to the hydrodynamics of seawater intrusion." Mar. Pollut. Bull.. 119.1 (2017): 132–144.
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Grehan, A. J., et al. "Towards ecosystem based management and monitoring of the deep Mediterranean, North-East Atlantic and Beyond." Deep-Sea Res. Part II-Top. Stud. Oceanogr.. 145 (2017): 1–7.
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Kaplan, D. M., et al. "Uncertainty in empirical estimates of marine larval connectivity." ICES J. Mar. Sci.. 74.6 (2017): 1723–1734.
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Loiseau, N., et al. "Multi-component β-diversity approach reveals conservation dilemma between species and functions of coral reef fishes." J. Biogeogr.. 44.3 (2017): 537–547.
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Oliveros-Ramos, R., et al. "A sequential approach to calibrate ecosystem models with multiple time series data." Progress in Oceanography. 151 (2017): 227–244.
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Ottimofiore, E., et al. "Responses of coral reef fishes to past climate changes are related to life-history traits." Ecol. Evol.. 7.6 (2017): 1996–2005.
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Pennino, M. G., et al. "Habitat modeling for cetacean management: Spatial distribution in the southern Pelagos Sanctuary (Mediterranean Sea)." Deep Sea Research Part II: Topical Studies in Oceanography (2017): 203–211.
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Torres-Irineo, E., et al. "Adaptive responses of tropical tuna purse-seiners under temporal regulations." Ambio. 46.1 (2017): 88–97.
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Xing, L., et al. "An individual-based model for simulating the ecosystem dynamics of Jiaozhou Bay, China." Ecological Modelling. 360.Supplement C (2017): 120–131.
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2016

Bertrand, A., et al. "3-D habitat suitability of jack mackerel Trachurus murphyi in the Southeastern Pacific, a comprehensive study." Prog. Oceanogr.. 146 (2016): 199–211.
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Boavida, J., et al. "Overlooked habitat of a vulnerable gorgonian revealed in the Mediterranean and Eastern Atlantic by ecological niche modelling." Sci Rep. 6 (2016): 36460.
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Boyd, C., et al. "Effectiveness of social information used by seabirds searching for unpredictable and ephemeral prey." Behav. Ecol.. 27.4 (2016): 1223–1234.
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Cazelles, K., et al. "On the integration of biotic interaction and environmental constraints at the biogeographical scale." Ecography. 39.10 (2016): 921–931.
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Coll, M., et al. "Modelling the cumulative spatial-temporal effects of environmental drivers and fishing in a NW Mediterranean marine ecosystem." Ecol. Model.. 331 (2016): 100–114.
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Drouineau, H., et al. "The need for a protean fisheries science to address the degradation of exploited aquatic ecosystems." Aquat. Living Resour.. 29.2 (2016): Unsp-E201.
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Dueri, S., et al. "Food security or economic profitability? Projecting the effects of climate and socioeconomic changes on global skipjack tuna fisheries under three management strategies." Global Environmental Change. 41 (2016): 1–12.
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Escalle, L., et al. "Environmental factors and megafauna spatio-temporal co-occurrence with purse-seine fisheries." Fish. Oceanogr.. 25.4 (2016): 433–447.
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Grüss, A., et al. "Management strategy evaluation using the individual-based, multispecies modeling approach OSMOSE." Ecological Modelling. 340 (2016): 86–105.
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Grüss, A., et al. "Estimating natural mortality rates and simulating fishing scenarios for Gulf of Mexico red grouper (Epinephelus morio) using the ecosystem model OSMOSE-WFS." Journal of Marine Systems. 154, Part B (2016): 264–279.
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Guiet, J., J. - C. Poggiale, and O. Maury. "Modelling the community size-spectrum: recent developments and new directions." Ecological Modelling. 337 (2016): 4–14.
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Halouani, G., et al. "Modelling food web structure using an end-to-end approach in the coastal ecosystem of the Gulf of Gabes (Tunisia)." Ecological Modelling. 339 (2016): 45–57.
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Heymans, J. J., et al. "Best practice in Ecopath with Ecosim food-web models for ecosystem-based management." Ecol. Model.. 331 (2016): 173–184.
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Jacquet, C., et al. "No complexity-stability relationship in empirical ecosystems." Nat. Commun.. 7 (2016): 12573.
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Kadowaki, K., et al. "Predicting biotic interactions and their variability in a changing environment." Biol. Lett.. 12.5 (2016): 20151073.
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Kirkman, S. P., et al. "Spatial characterisation of the Benguela ecosystem for ecosystem-based management." Afr. J. Mar. Sci.. 38.1 (2016): 7–22.
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Mante, C., et al. "Fitting the truncated negative binomial distribution to count data A comparison of estimators, with an application to groundfishes from the Mauritanian Exclusive Economic Zone." Environ. Ecol. Stat.. 23.3 (2016): 359–385.
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Monsarrat, S., et al. "A spatially explicit estimate of the prewhaling abundance of the endangered North Atlantic right whale." Conserv. Biol.. 30.4 (2016): 783–791.
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Passuni, G., et al. "Seasonality in marine ecosystems: Peruvian seabirds, anchovy, and oceanographic conditions." Ecology. 97.1 (2016): 182–193.
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Si, X., et al. "Selective extinction drives taxonomic and functional alpha and beta diversities in island bird assemblages." J Anim Ecol. 85.2 (2016): 409–418.
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Thiebault, A., et al. "How to capture fish in a school? Effect of successive predator attacks on seabird feeding success." J Anim Ecol. 85.1 (2016): 157–167.
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Vendeville, P., et al. "Restoring the ecosystem creates wealth. The case of the Northern coast of Tunisia’s deep-water rose shrimp trawl fishery." Fisheries Research. 183 (2016): 55–73.
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Villon, S., et al. "Coral Reef Fish Detection and Recognition in Underwater Videos by Supervised Machine Learning: Comparison Between Deep Learning and HOG plus SVM Methods." Eds. J. BlancTalon, et al. Advanced Concepts for Intelligent Vision Systems, Acivs 2016, 10016. Cham: Springer Int Publishing Ag, 2016. 160–171.
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2015

Albouy, C., et al. "FishMed: traits, phylogeny, current and projected species distribution of Mediterranean fishes, and environmental data." Ecology. 96.8 (2015): 2312–2313.
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Andrello, M., et al. "Additive effects of climate change on connectivity between marine protected areas and larval supply to fished areas." Diversity Distrib.. 21.2 (2015): 139–150.
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Arrizabalaga, H., et al. "Global habitat preferences of commercially valuable tuna." Deep Sea Research Part II: Topical Studies in Oceanography. 113 (2015): 102–112.
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Christensen, V., et al. "The global ocean is an ecosystem: simulating marine life and fisheries." Global Ecology and Biogeography. 24.5 (2015): 507–517.
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Coll, M., et al. "Modelling dynamic ecosystems: venturing beyond boundaries with the Ecopath approach." Rev Fish Biol Fisheries. 25.2 (2015): 413–424.
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Corrales, X., et al. "Ecosystem structure and fishing impacts in the northwestern Mediterranean Sea using a food web model within a comparative approach." Journal of Marine Systems. 148 (2015): 183–199.
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David, C., et al. "Understanding winter distribution and transport pathways of the invasive ctenophore Mnemiopsis leidyi in the North Sea: coupling habitat and dispersal modelling approaches." Biol. Invasions. 17.9 (2015): 2605–2619.
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Descombes, P., et al. "Forecasted coral reef decline in marine biodiversity hotspots under climate change." Glob Change Biol. 21.7 (2015): 2479–2487.
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Dortel, E., et al. "An integrated Bayesian modeling approach for the growth of Indian Ocean yellowfin tuna." Fisheries Research. 163.Si (2015): 69–84.
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FU, C., et al. "Relationships among fisheries exploitation, environmental conditions, and ecological indicators across a series of marine ecosystems." Journal of Marine Systems. 148 (2015): 101–111.
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Gaertner, D., and J. - P. Hallier. "Tag shedding by tropical tunas in the Indian Ocean and other factors affecting the shedding rate." Fisheries Research. 163.Si (2015): 98–105.
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Grüss, A., et al. "Evaluation of the trophic structure of the West Florida Shelf in the 2000s using the ecosystem model OSMOSE." Journal of Marine Systems. 144 (2015): 30–47.
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Halouani, G., et al. "Fishing impact in Mediterranean ecosystems: an EcoTroph modeling approach." Journal of Marine Systems. 150 (2015): 22–33.
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Kappes, M. A., et al. "Reproductive constraints influence habitat accessibility, segregation, and preference of sympatric albatross species." Movement Ecology. 3.1 (2015): 34.
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Lefort, S., et al. "Spatial and body-size dependent response of marine pelagic communities to projected global climate change." Global Change Biology. 21.1 (2015): 154–164.
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Mazel, F., et al. "Mammalian phylogenetic diversity-area relationships at a continental scale." Ecology. 96.10 (2015): 2814–2822.
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Poggiale, J. - C., et al. "Modeling in Microbial Ecology." Eds. J. - C. Bertrand, et al. Environmental Microbiology: Fundamentals and Applications. Springer Netherlands, 2015. 847–882.
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Putman, N. F., et al. "Magnetic navigation behavior and the oceanic ecology of young loggerhead sea turtles." J Exp Biol. 218.7 (2015): 1044–1050.
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Sirot, C., et al. "Linking temporal changes in the demographic structure and individual growth to the decline in the population of a tropical fish." Estuarine, Coastal and Shelf Science. 165 (2015): 166–175.
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Triantis, K. A., et al. "Diversity regulation at macro-scales: species richness on oceanic archipelagos." Global Ecology and Biogeography. 24.5 (2015): 594–605.
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Turon, V., et al. "Use of fermentative metabolites for heterotrophic microalgae growth: Yields and kinetics." Bioresource Technology. 175 (2015): 342–349.
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Valls, A., M. Coll, and V. Christensen. "Keystone species : toward an operational concept for marine biodiversity conservation." Ecological Monographs. 85.1 (2015): 29–47.
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van Gils, J. A., et al. "Moving on with foraging theory: incorporating movement decisions into the functional response of a gregarious shorebird." Journal of Animal Ecology. 84 (2015): 554–564.
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Young, J. W., et al. "Setting the stage for a global-scale trophic analysis of marine top predators: a multi-workshop review." Rev Fish Biol Fisheries. 25.1 (2015): 261–272.
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2014

Albouy, C., et al. "From projected species distribution to food-web structure under climate change." Global Change Biology. 20.3 (2014): 730–741.
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Boyd, C., et al. "Movement models provide insights into variation in the foraging effort of central place foragers." Ecological Modelling. 286 (2014): 13–25.
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Canard, E. F., et al. "Empirical Evaluation of Neutral Interactions in Host-Parasite Networks." American Naturalist. 183.4 (2014): 468–479.
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Chaboud, C. "Economie des pêches." Eds. A. Monaco, and P. Prouzet. Valorisation et économie des ressources marines. Londres: Iste, 2014. 277–344.
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Christensen, V., et al. "Representing Variable Habitat Quality in a Spatial Food Web Model." Ecosystems. 17.8 (2014): 1397–1412.
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Colléter, M., et al. "Fishing inside or outside? A case studies analysis of potential spillover effect from marine protected areas, using food web models." Journal of Marine Systems. 139 (2014): 383–395.
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CORMON, X., et al. "Spatial interactions between saithe (Pollachius virens) and hake (Merluccius merluccius) in the North Sea." Ices Journal Of Marine Science. 71.6 (2014): 1342–1355.
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Cuif, M., et al. "Wind-induced variability in larval retention in a coral reef system: a biophysical modelling study in the South-West Lagoon of New Caledonia." Progress in Oceanography. 122 (2014): 105–115.
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FROMENTIN, J. - M., et al. "Oceanographic changes and exploitation drive the spatio-temporal dynamics of Atlantic bluefin tuna (Thunnus thynnus)." Fisheries Oceanography. 23.2 (2014): 147–156.
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Hattab, T., et al. "Towards a better understanding of potential impacts of climate change on marine species distribution: a multiscale modelling approach." Global Ecology and Biogeography. 23.12 (2014): 1417–1429.
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Jeanmougin, M., et al. "Fine-scale urbanization affects Odonata species diversity in ponds of a megacity (Paris, France)." Acta Oecologica-International Journal of Ecology. 59 (2014): 26–34.
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LAGABRIELLE, E., et al. "Connecting MPAs – eight challenges for science and management." Aquatic Conservation-marine And Freshwater Ecosystems. 24 (2014): 94–110.
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LELIEVRE, S., et al. "Delineating recurrent fish spawning habitats in the North Sea." Journal Of Sea Research. 91 (2014): 1–14.
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Lett, C., et al. "Effects of successive predator attacks on prey aggregations." Theor Ecol. 7.3 (2014): 239–252.
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MAHE, K., et al. "Morphological variability of the shape of striped red mullet Mullus surmuletus in relation to stock discrimination between the Bay of Biscay and the eastern English Channel." Journal Of Fish Biology. 84.4 (2014): 1063–1073.
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Putman, N. F., et al. "Numerical dispersal simulations and genetics help explain the origin of hawksbill sea turtles in Ascension Island." Journal of Experimental Marine Biology and Ecology. 450.Special Issue (2014): 98–108.
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Robert, M., L. Dagorn, and J. L. Deneubourg. "The aggregation of tuna around floating objects: What could be the underlying social mechanisms?" Journal of Theoretical Biology. 359 (2014): 161–170.
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Saulquin, B., et al. "Multiscale Event-Based Mining in Geophysical Time Series: Characterization and Distribution of Significant Time-Scales in the Sea Surface Temperature Anomalies Relatively to ENSO Periods from 1985 to 2009." IEEE J. Sel. Top. Appl. Earth Observ. Remote Sens.. 7.8 (2014): 3543–3552.
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Valladares, F., et al. "The effects of phenotypic plasticity and local adaptation on forecasts of species range shifts under climate change." Ecology Letters. 17.11 (2014): 1351–1364.
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