2018

Dalongeville, A., et al. "Geographic isolation and larval dispersal shape seascape genetic patterns differently according to spatial scale." Evol. Appl.. 11.8 (2018): 1437–1447.
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Dalongeville, A., et al. "Combining six genome scan methods to detect candidate genes to salinity in the Mediterranean striped red mullet (Mullus surmuletus)." BMC Genomics. 19 (2018): 217.
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Duval, C., et al. "Phylogeny and salt-tolerance of freshwater Nostocales strains: Contribution to their systematics and evolution." Harmful Algae. 73 (2018): 58–71.
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2017

Ben Abdelkrim, A., et al. "A landscape genetic analysis of important agricultural pest species in Tunisia: The whitefly Bemisia tabaci." Plos One. 12.10 (2017): e0185724.
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de Verdal, H., et al. "Improving feed efficiency in fish using selective breeding: a review." Rev Aquacult (2017).
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Doan, K. Q., et al. "Viral encephalopathy and retinopathy in aquaculture: a review." J Fish Dis. 40.5 (2017): 717–742.
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Durand, J. - D., et al. "DNA barcoding grey mullets." Rev. Fish. Biol. Fish.. 27.1 (2017): 233–243.
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Vandeputte, M., et al. "Does early growth play a role in the sex determination of european SEABASS Dicentrarchus labrax?" Aquaculture. 472 (2017): 114.
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Vandeputte, M., et al. "Investigation of morphological predictors of fillet and carcass yield in European sea bass (Dicentrarchus labrax) for application in selective breeding." Aquaculture. 470 (2017): 40–49.
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2016

Bailleul, D., S. Stoeckel, and S. Arnaud-Haond. "RClone: a package to identify MultiLocus Clonal Lineages and handle clonal data sets in r." Methods Ecol. Evol.. 7.8 (2016): 966–970.
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Dalongeville, A., et al. "Ecological traits shape genetic diversity patterns across the Mediterranean Sea: a quantitative review on fishes." J. Biogeogr.. 43.4 (2016): 845–857.
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Dubois, M., et al. "Linking basin-scale connectivity, oceanography and population dynamics for the conservation and management of marine ecosystems." Glob. Ecol. Biogeogr.. 25.5 (2016): 503–515.
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Pirog, A., et al. "Isolation and characterization of eight microsatellite loci from Galeocerdo cuvier (tiger shark) and cross-amplification in Carcharhinus leucas, Carcharhinus brevipinna, Carcharhinus plumbeus and Sphyrna lewini." PeerJ. 4 (2016): e2041.
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Reichel, K., et al. "Rare sex or out of reach equilibrium? The dynamics of F-IS in partially clonal organisms." BMC Genet.. 17 (2016): 76.
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Strauß, A., et al. "Opposing Patterns of Seasonal Change in Functional and Phylogenetic Diversity of Tadpole Assemblages." Plos One. 11.3 (2016): e0151744.
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2015

KIVELA, M., S. ARNAUD-HAOND, and J. SARAMAKI. "EDENetworks: A user-friendly software to build and analyse networks in biogeography, ecology and population genetics." Molecular Ecology Resources. 15.1 (2015): 117–122.
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Weber, A. A. - T., et al. "Influence of the larval phase on connectivity: strong differences in the genetic structure of brooders and broadcasters in the Ophioderma longicauda species complex." Mol Ecol. 24.24 (2015): 6080–6094.
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2012

Mouquet, N., et al. "Ecophylogenetics: advances and perspectives." Biological Reviews. 87.4 (2012): 769–785.
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2011

Auguet, J. C., et al. "Seasonal changes of freshwater ammonia-oxidizing archaeal assemblages and nitrogen species in oligotrophic alpine lakes." Appl Environ Microbiol. 77.6 (2011): 1937–1945.
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Barberan, A., et al. "Phylogenetic ecology of widespread uncultured clades of the Kingdom Euryarchaeota." Mol Ecol. 20.9 (2011): 1988–1996.
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2010

Auguet, J. C., A. Barberan, and E. O. Casamayor. "Global ecological patterns in uncultured Archaea." Isme J. 4.2 (2010): 182–190.
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Lliros, M., et al. "Vertical distribution of ammonia-oxidizing crenarchaeota and methanogens in the epipelagic waters of Lake Kivu (Rwanda-Democratic Republic of the Congo)." Appl Environ Microbiol. 76.20 (2010): 6853–6863.
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2009

Auguet, J. C., et al. "Potential effect of freshwater virus on the structure and activity of bacterial communities in the Marennes-Oleron Bay (France)." Microb Ecol. 57.2 (2009): 295–306.
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2008

Auguet, J. C., and E. O. Casamayor. "A hotspot for cold crenarchaeota in the neuston of high mountain lakes." Environ Microbiol. 10.4 (2008): 1080–1086.
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Auguet, J. C., et al. "Fingerprinting the genetic diversity of the biotin carboxylase gene (accC) in aquatic ecosystems as a potential marker for studies of carbon dioxide assimilation in the dark." Environ Microbiol. 10.10 (2008): 2527–2536.
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2006

Auguet, J. C., H. Montanie, and P. Lebaron. "Structure of virioplankton in the Charente Estuary (France): transmission electron microscopy versus pulsed field gel electrophoresis." Microb Ecol. 51.2 (2006): 197–208.
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