2017

Bundy, A., et al. "Strong fisheries management and governance positively impact ecosystem status." Fish Fish. 18.3 (2017): 412–439.
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Coll, M., and J. Steenbeek. "Standardized ecological indicators to assess aquatic food webs: The ECOIND software plug-in for Ecopath with Ecosim models." Environ. Modell. Softw.. 89 (2017): 120–130.
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Darling, E. S., et al. "Relationships between structural complexity, coral traits, and reef fish assemblages." Coral Reefs. 36.2 (2017): 561–575.
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De Wit, R., et al. "Restoration ecology of coastal lagoons: new methods for the prediction of ecological trajectories and economic valuation." Aquatic Conserv: Mar. Freshw. Ecosyst.. 27.1 (2017): 137–157.
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Duffy, L. M., et al. "Global trophic ecology of yellowfin, bigeye, and albacore tunas: understanding predation on micronekton communities at ocean-basin scales." Deep Sea Research Part II: Topical Studies in Oceanography. 140 (2017): 55–73.
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Escalle, L., et al. "Forecasted consequences of simulated FAD moratoria in the Atlantic and Indian Oceans on catches and bycatches." ICES J. Mar. Sci.. 74.3 (2017): 780–792.
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Filmalter, J. D., et al. "Feeding ecology of silky sharks Carcharhinus falciformis associated with floating objects in the western Indian Ocean." J. Fish Biol.. 90.4 (2017): 1321–1337.
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Grazia Pennino, M., et al. "The analysis of convergence in ecological indicators: An application to the Mediterranean fisheries." Ecol. Indic.. 78 (2017): 449–457.
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Mérigot, B., et al. "Fish assemblages in tropical estuaries of northeast Brazil: A multi-component diversity approach." Ocean & Coastal Management. 143 (2017): 175–183.
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Moullec, F., et al. "Trophic models: What do we learn about Celtic Sea and Bay of Biscay ecosystems?" Journal of Marine Systems. 172 (2017): 104–117.
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Navarro, J., et al. "Feeding strategies and ecological roles of three predatory pelagic fish in the western Mediterranean Sea." Deep-Sea Res. Part II-Top. Stud. Oceanogr.. 140 (2017): 9–17.
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Oliveros-Ramos, R., et al. "A sequential approach to calibrate ecosystem models with multiple time series data." Progress in Oceanography. 151 (2017): 227–244.
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Silva-Júnior, C. A. B., et al. "Functional diversity of fish in tropical estuaries: A traits-based approach of communities in Pernambuco, Brazil." Estuarine, Coastal and Shelf Science (2017).
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Sirot, C., et al. "Using otolith organic matter to detect diet shifts in Bardiella chrysoura, during a period of environmental changes." Mar. Ecol.-Prog. Ser.. 575 (2017): 137–152.
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Violle, C., et al. "Functional Rarity: The Ecology of Outliers." Trends Ecol. Evol.. 32.5 (2017): 356–367.
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2016

Bertrand, A., et al. "3-D habitat suitability of jack mackerel Trachurus murphyi in the Southeastern Pacific, a comprehensive study." Prog. Oceanogr.. 146 (2016): 199–211.
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Boavida, J., et al. "Overlooked habitat of a vulnerable gorgonian revealed in the Mediterranean and Eastern Atlantic by ecological niche modelling." Sci Rep. 6 (2016): 36460.
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Coll, M., et al. "Ecological indicators to capture the effects of fishing on biodiversity and conservation status of marine ecosystems." Ecological Indicators. 60 (2016): 947–962.
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Coll, M., et al. "Modelling the cumulative spatial-temporal effects of environmental drivers and fishing in a NW Mediterranean marine ecosystem." Ecol. Model.. 331 (2016): 100–114.
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D'agata, S., et al. "Marine reserves lag behind wilderness in the conservation of key functional roles." Nat. Commun.. 7 (2016): 12000.
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de Fouw, J., et al. "Drought, Mutualism Breakdown, and Landscape-Scale Degradation of Seagrass Beds." Curr. Biol.. 26.8 (2016): 1051–1056.
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Deininger, A., et al. "Simulated terrestrial runoff triggered a phytoplankton succession and changed seston stoichiometry in coastal lagoon mesocosms." Mar. Environ. Res.. 119 (2016): 40–50.
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Drouineau, H., et al. "The need for a protean fisheries science to address the degradation of exploited aquatic ecosystems." Aquat. Living Resour.. 29.2 (2016): Unsp-E201.
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Dubois, M., et al. "Linking basin-scale connectivity, oceanography and population dynamics for the conservation and management of marine ecosystems." Glob. Ecol. Biogeogr.. 25.5 (2016): 503–515.
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GASCUEL, D., et al. "Fishing impact and environmental status in European seas: a diagnosis from stock assessments and ecosystem indicators." Fish And Fisheries. 17.1 (2016): 31–55.
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Giakoumi, S., et al. "Space invaders; biological invasions in marine conservation planning." Divers. Distrib.. 22.12 (2016): 1220–1231.
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Grüss, A., et al. "Management strategy evaluation using the individual-based, multispecies modeling approach OSMOSE." Ecological Modelling. 340 (2016): 86–105.
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Grüss, A., et al. "Estimating natural mortality rates and simulating fishing scenarios for Gulf of Mexico red grouper (Epinephelus morio) using the ecosystem model OSMOSE-WFS." Journal of Marine Systems. 154, Part B (2016): 264–279.
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Gruss, A., D. Yemane, and T. P. Fairweather. "Exploring the spatial distribution patterns of South African Cape hakes using generalised additive models." Afr. J. Mar. Sci.. 38.3 (2016): 395–409.
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Guiet, J., J. - C. Poggiale, and O. Maury. "Modelling the community size-spectrum: recent developments and new directions." Ecological Modelling. 337 (2016): 4–14.
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Halouani, G., et al. "Modelling food web structure using an end-to-end approach in the coastal ecosystem of the Gulf of Gabes (Tunisia)." Ecological Modelling. 339 (2016): 45–57.
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Heymans, J. J., et al. "Best practice in Ecopath with Ecosim food-web models for ecosystem-based management." Ecol. Model.. 331 (2016): 173–184.
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Kirkman, S. P., et al. "Spatial characterisation of the Benguela ecosystem for ecosystem-based management." Afr. J. Mar. Sci.. 38.1 (2016): 7–22.
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Lucena Frédou, F., et al. "Life history traits and fishery patterns of teleosts caught by the tuna longline fishery in the South Atlantic and Indian Oceans." Fisheries Research. 179 (2016): 308–321.
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Moreno, G., et al. "Fish aggregating devices (FADs) as scientific platforms." Fish Res.. 178 (2016): 122–129.
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Quétel, C., et al. "Iles Eparses (SW Indian Ocean) as reference ecosystems for environmental research." Acta Oecologica (2016): 1–8.
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Sardenne, F., et al. "Are condition factors powerful proxies of energy content in wild tropical tunas?" Ecol. Indic.. 71 (2016): 467–476.
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Toussaint, A., et al. "Global functional diversity of freshwater fish is concentrated in the Neotropics while functional vulnerability is widespread." Sci Rep. 6 (2016): 22125.
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Tribot, A. - S., et al. "Taxonomic and functional diversity increase the aesthetic value of coralligenous reefs." Sci Rep. 6 (2016): 34229.
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2015

Arrizabalaga, H., et al. "Global habitat preferences of commercially valuable tuna." Deep Sea Research Part II: Topical Studies in Oceanography. 113 (2015): 102–112.
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Christensen, V., et al. "The global ocean is an ecosystem: simulating marine life and fisheries." Global Ecology and Biogeography. 24.5 (2015): 507–517.
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Coll, M., et al. "Modelling dynamic ecosystems: venturing beyond boundaries with the Ecopath approach." Rev Fish Biol Fisheries. 25.2 (2015): 413–424.
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Corrales, X., et al. "Ecosystem structure and fishing impacts in the northwestern Mediterranean Sea using a food web model within a comparative approach." Journal of Marine Systems. 148 (2015): 183–199.
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Eddy, T. D., et al. "Trade-offs between invertebrate fisheries catches and ecosystem impacts in coastal New Zealand." ICES J. Mar. Sci.. 72.5 (2015): 1380–1388.
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FU, C., et al. "Relationships among fisheries exploitation, environmental conditions, and ecological indicators across a series of marine ecosystems." Journal of Marine Systems. 148 (2015): 101–111.
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Giakoumi, S., et al. "Towards a framework for assessment and management of cumulative human impacts on marine food webs." Conservation Biology. 29.4 (2015): 1228–1234.
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Grüss, A., et al. "Evaluation of the trophic structure of the West Florida Shelf in the 2000s using the ecosystem model OSMOSE." Journal of Marine Systems. 144 (2015): 30–47.
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Halouani, G., et al. "Fishing impact in Mediterranean ecosystems: an EcoTroph modeling approach." Journal of Marine Systems. 150 (2015): 22–33.
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Langlois, J., et al. "Sea use impact category in life cycle assessment : characterization factors for life support functions." International Journal of Life Cycle Assessment. 20.7 (2015): 970–981.
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Lezama-Ochoa, N., et al. "Biodiversity in the by-catch communities of the pelagic ecosystem in the Western Indian Ocean." Biodivers Conserv. 24.11 (2015): 2647–2671.
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Reygondeau, G., et al. "Progressive changes in the Western English Channel foster a reorganization in the plankton food web." Prog. Oceanogr.. 137 (2015): 524–532.
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Sirot, C., et al. "Combinations of biological attributes predict temporal dynamics of fish species in response to environmental changes." Ecological Indicators. 48 (2015): 147–156.
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Valls, A., M. Coll, and V. Christensen. "Keystone species : toward an operational concept for marine biodiversity conservation." Ecological Monographs. 85.1 (2015): 29–47.
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2014

Marsac, F., et al. "Ecosystem functioning in the Mozambique Channel : synthesis and future research." Deep-Sea Research Part II.Topical Studies in Oceanography. 100.No spécial (2014): 212–220.
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Pethybridge, H., et al. "Temporal and inter-specific variations in forage fish feeding conditions in the NW Mediterranean: lipid content and fatty acid compositional changes." Marine Ecology Progress Series. 512 (2014): 39–54.
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Pikitch, E. K., et al. "The global contribution of forage fish to marine fisheries and ecosystems." Fish and Fisheries. 15.1 (2014): 43–64.
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Travis, J., et al. "Integrating the invisible fabric of nature into fisheries management." Proceedings of the National Academy of Sciences of the United States of America. 111.2 (2014): 581–584.
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Zilius, M., et al. "Feedback Mechanisms Between Cyanobacterial Blooms, Transient Hypoxia, and Benthic Phosphorus Regeneration in Shallow Coastal Environments." Estuaries and Coasts. 37.3 (2014): 680–694.
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2013

Brochier, T., et al. "A multi-agent ecosystem model for studying changes in a tropical estuarine fish assemblage within a marine protected area." Aquatic Living Resources. 26.02 (2013): 147–158.
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Buisson, L., et al. "Toward a loss of functional diversity in stream fish assemblages under climate change." Glob. Change Biol.. 19.2 (2013): 387–400.
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Catherine, A., et al. "Projecting the Impact of Regional Land-Use Change and Water Management Policies on Lake Water Quality: An Application to Periurban Lakes and Reservoirs." PloS one. 8.8 (2013).
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Combe, M., et al. "Freshwater prokaryote and virus communities can adapt to a controlled increase in salinity through changes in their structure and interactions." Estuarine Coastal and Shelf Science. 133 (2013): 58–66.
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De Wit, R., et al. "Conservation of a permanent hypersaline lake: management options evaluated from decadal variability of Coleofasciculus chthonoplastes microbial mats." Aquatic Conservation-Marine and Freshwater Ecosystems. 23.4 (2013): 532–545.
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Gilles, S., et al. "An integrated fish-plankton aquaculture system in brackish water." Animal. 7.2 (2013): 322–329.
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Gravel, D., et al. "Inferring food web structure from predator-prey body size relationships." Methods in Ecology and Evolution. 4.11 (2013): 1083–1090.
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Handegard, N. O., et al. "Towards an acoustic-based coupled observation and modelling system for monitoring and predicting ecosystem dynamics of the open ocean." Fish and Fisheries. 14 (2013): 605–615.
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Hobday, A. J., et al. "Climate impacts and oceanic top predators : moving from impacts to adaptation in oceanic systems." Reviews in Fish Biology and Fisheries. 23 (2013): 537–546.
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Lafabrie, C., et al. "Impact of contaminated-sediment resuspension on phytoplankton in the Biguglia lagoon (Corsica, Mediterranean Sea)." Estuarine Coastal and Shelf Science. 130 (2013): 70–80.
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Lassalle, G., et al. "Ecosystem status and functioning : searching for rules of thumb using an intersite comparison of food-web models of Northeast Atlantic continental shelves." ICES Journal of Marine Science. 70.1 (2013): 135–149.
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Thebaud, O., et al. "Building ecological-economic models and scenarios of marine resource systems : workshop report." Marine Policy. 43 (2013): 382–386.
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2012

Gaertner-Mazouni, N., and R. De Wit. "Exploring new issues for coastal lagoons monitoring and management." Estuarine Coastal and Shelf Science. 114 (2012): 1–6.
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Gasche, L., et al. "Global assessment of the fishing impacts on the Southern Benguela ecosystem using an EcoTroph modelling approach." Journal of Marine Systems. 90.1 (2012): 1–12.
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Hochard, S., et al. "Benthic pelagic coupling in a shallow oligotrophic ecosystem: Importance of microphytobenthos and physical forcing." Ecological Modelling. 247 (2012): 307–318.
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Lassalle, G., et al. "An ecosystem approach for the assessment of fisheries impacts on marine top predators : the Bay of Biscay case study." Ices Journal of Marine Science. 69.6 (2012): 925–938.
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Mouquet, N., et al. "Ecophylogenetics: advances and perspectives." Biological Reviews. 87.4 (2012): 769–785.
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2011

Barberan, A., et al. "Phylogenetic ecology of widespread uncultured clades of the Kingdom Euryarchaeota." Mol Ecol. 20.9 (2011): 1988–1996.
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Chaboud, C., et al. "Marine protected areas and governance : towards a multidisciplinary approach." Protected areas, sustainable land ? IRD Bondy: Ashgate, 2011. 31–49.
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Chassot, E., et al. "Satellite remote sensing for an ecosystem approach to fisheries management." Ices Journal of Marine Science. 68 (2011): 651–666.
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Handegard, N. O., et al. "Toward a global observation and modeling system for studying the ecology of the open ocean using acoustics." The Journal of the Acoustical Society of America. 129.4 (2011): 2700.
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2010

Auguet, J. C., A. Barberan, and E. O. Casamayor. "Global ecological patterns in uncultured Archaea." Isme J. 4.2 (2010): 182–190.
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Blanchard, J. L., et al. "Trend analysis of indicators : a comparison of recent changes in the status of marine ecosystems around the world." Ices Journal of Marine Science. 67.4 (2010): 732–744.
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Bundy, A., et al. "The good(ish), the bad, and the ugly : a tripartite classification of ecosystem trends." Ices Journal of Marine Science. 67 (2010): 745–768.
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Chassot, E., et al. "Global marine primary production constrains fisheries catches." Ecology Letters. 13 (2010): 495–505.
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Diaz, E., et al. "Using indicators for evaluating, comparing, and communicating the ecological status of exploited marine ecosystems. 2. Setting the scene." Ices Journal of Marine Science. 67 (2010): 692–716.
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Duboz, R., et al. "Application of an evolutionary algorithm to the inverse parameter estimation of an individual-based model." Ecological Modelling. 221 (2010): 840–849.
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Jouffre, D., et al. "Estimating EAF indicators from scientific trawl surveys: theoretical and practical concerns." Ices Journal of Marine Science. 67.4 (2010): 796–806.
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Kaplan, D., et al. "New tools for the spatial management of living marine resources." Current Opinion in Environmental Sustainability. 2 (2010): 88–93.
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Link, J. S., et al. "Relating marine ecosystem indicators to fishing and environmental drivers : an elucidation of contrasting responses." Ices Journal of Marine Science. 67 (2010): 787–795.
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Llope, M., et al. "Overfishing of top predators eroded the resilience of the Black Sea system regardless of the climate and anthropogenic conditions." Global Change Biology. 17.3 (2010): 1251–1265.
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Perry, R. I., et al. "Sensitivity of marine systems to climate and fishing: Concepts, issues and management responses." Journal of Marine Systems. 79 (2010): 427–435.
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PLANQUE, B., et al. "How does fishing alter marine populations and ecosystems sensitivity to climate?" Journal of Marine Systems. 79.3-4 (2010): 403–417.
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Shin, Y. - J., and L. J. Shannon. "Using indicators for evaluating, comparing, and communicating the ecological status of exploited marine ecosystems. 1. The IndiSeas project." Ices Journal of Marine Science. 67 (2010): 686–691.
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Shin, Y. - J., et al. "Can simple be useful and reliable? Using ecological indicators to represent and compare the states of marine ecosystems." Ices Journal of Marine Science. 67.4 (2010): 717–731.
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Shin, Y. - J., et al. "Using indicators for evaluating, comparing, and communicating the ecological status of exploited marine ecosystems. 2. Setting the scene." Ices Journal of Marine Science. 67.4 (2010): 692–716.
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Travers, M., et al. "Changes in food web structure under scenarios of overfishing in the southern Benguela : comparison of the Ecosim and OSMOSE modelling approaches." Journal of Marine Systems. 79 (2010): 101–111.
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2009

Mullon, C., et al. "A minimal model of the variability of marine ecosystems." Fish. Fish.. 10.2 (2009): 115–131.
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Mullon, C., Y. - J. Shin, and P. Cury. "Neats : a Network Economics Approach to Trophic Systems." Ecol. Model. (2009): 13-p.
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Travers, M., et al. "Two-way coupling versus one-way forcing of plankton and fish models to predict ecosystem changes in the Benguela." Ecological Modelling. 220.21 (2009): 3089–3099.
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Yemane, D., Y. - J. Shin, and J. G. Field. "Exploring the effect of Marine Protected Areas on the dynamics of fish communities in the southern Benguela : an individual-based modelling approach." Ices Journal of Marine Science. 66.2 (2009): 378–387.
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2008

Auguet, J. C., et al. "Fingerprinting the genetic diversity of the biotin carboxylase gene (accC) in aquatic ecosystems as a potential marker for studies of carbon dioxide assimilation in the dark." Environ Microbiol. 10.10 (2008): 2527–2536.
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2005

Auguet, J. C., et al. "Dynamic of virioplankton abundance and its environmental control in the Charente estuary (France)." Microb Ecol. 50.3 (2005): 337–349.
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