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Bui, V. N., Nguyen, T. T. H., Mai, C. T., Bettarel, Y., Hoang, T. Y., Trinh, T. T. L., et al. (2016). Procarcinogens – Determination and Evaluation by Yeast-Based Biosensor Transformed with Plasmids Incorporating RAD54 Reporter Construct and Cytochrome P450 Genes. Plos One, 11(12), e0168721.
Résumé: In Vietnam, a great number of toxic substances, including carcinogens and procarcinogens, from industrial and agricultural activities, food production, and healthcare services are daily released into the environment. In the present study, we report the development of novel yeast-based biosensor systems to determine both genotoxic carcinogens and procarcinogens by cotransformation with two plasmids. One plasmid is carrying human CPR and CYP (CYP3A4, CYP2B6, or CYP2D6) genes, while the other contains the RAD54-GFP reporter construct. The three resulting coexpression systems bearing both CPR-CYP and RAD54-GFP expression cassettes were designated as CYP3A4/CYP2B6/CYP2D6 + RAD54 systems, respectively and used to detect and evaluate the genotoxic potential of carcinogens and procarcinogens by selective activation and induction of both CPR-CYP and RAD54-GFP expression cassettes in response to DNA damage. Procarcinogens were shown to be predominantly, moderately or not bioactivated by one of the CYP enzymes and thus selectively detected by the specific coexpression system. Aflatoxin B1 and benzo(a)pyrene were predominantly detected by the CYP3A4 + RAD54 system, while N-nitrosodimethylamine only moderately activated the CYP2B6 + RAD54 reporter system and none of them was identified by the CYP2D6 + RAD54 system. In contrast, the genotoxic carcinogen, methyl methanesulfonate, was detected by all systems. Our yeast-reporter system can be performed in 384-well microplates to provide efficient genotoxicity testing to identify various carcinogenic compounds and reduce chemical consumption to about 53% as compared with existing 96-well genotoxicity bioassays. In association with a liquid handling robot, this platform enables rapid, cost-effective, and high-throughput screening of numerous analytes in a fully automated and continuous manner without the need for user interaction.
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Desvignes, T., Fauvel, C., & Bobe, J. (2011). The nme gene family in zebrafish oogenesis and early development. Naunyn-Schmiedebergs Arch. Pharmacol., 384(4-5), 439–449.
Résumé: After the recent report of the expression of several nme genes in the zebrafish gonads, the present study aimed at further analyzing the expression of nme genes in the ovary with special attention for the nme transcripts that are maternally inherited and could thus participate in the determination of oocyte developmental competence. The expression levels of all groups I and II nme genes were characterized by QPCR in a panel of zebrafish tissues. The nme genes exhibiting an ovarian expression were subsequently monitored throughout oogenesis and early development, and their expression sites characterized using in situ hybridization. Here, we show that nme2b1, nme3, nme4, and nme6 are highly expressed in the ovary and present in the zebrafish oocyte throughout oogenesis. While the four transcripts are maternally inherited, nme3 and nme6 display a typical maternal profile and are detected in the zebrafish early embryo. In contrast to nme3, nme6, abundance exhibits a sharp decrease during early embryogenesis. After zygotic genome activation, we observed an increased expression of nme2b1, nme2b2, nme3, and nme6. The present study provides a comprehensive overview of the expression of nme family members during zebrafish oogenesis and early development. In addition, the maternal origin of two nme transcripts in the early embryo is reported here for the first time in any vertebrate species. Together, our observations suggest an important role of the nme family in oocyte and embryo development in vertebrates.
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Patino, J., Weigelt, P., Guilhaumon, F., Kreft, H., Triantis, K. A., Naranjo-Cigala, A., et al. (2014). Differences in species-area relationships among the major lineages of land plants: a macroecological perspective. Global Ecology and Biogeography, 23(11), 1275–1283.
Résumé: AimAlthough the increase in species richness with increasing area is considered one of the few laws in ecology, the role of environmental and taxon-specific features in shaping species-area relationships (SARs) remains controversial. Using 421 land-plant floras covering continents, continental islands and oceanic islands, we investigate whether variations in SAR parameters can be interpreted in terms of differences among lineages in speciation mode and dispersal capacities (TAXON), or of geological history and geographical isolation between continents and islands (GEO). LocationGlobal. MethodsLinear mixed-effects models describing variation in SARs, depending on the factors GEO and TAXON and controlling for differences between realms (REALM) and biomes (BIOME). ResultsThe best random-effect structure included both random slopes and random intercepts for GEO, TAXON, REALM and BIOME. This accounted for 77% of the total variation in species richness, substantially more than the 27% statistically explained by the model with fixed effects only (i.e. the simple SAR). The slopes of the SARs were higher for oceanic islands than for continental islands and continents, and higher in spermatophytes than in pteridophytes and bryophytes. The intercepts largely exhibited the reverse trend. TAXON was included in best-fit models restricted to oceanic and continental islands, but not continents. Analysing each plant lineage separately, the intercept of GEO was only included in the random structure of spermatophytes. Main conclusionsSAR parameters varied considerably depending on geological history and taxon-specific traits. Such differences in SARs among land plants challenge the neutral theory that the accumulation of species richness on islands is controlled exclusively by extrinsic factors. Taxon-specific differences in SARs were, however, confounded by interactions with geological history and geographical isolation. This highlights the importance of applying integrative frameworks that take both environmental context and taxonomic idiosyncrasies into account in SAR analyses.
Mots-Clés: biology; bryophytes; Carrying capacity; cloning; data; Dispersal ability; et-al.; geographical; isolation; long-distance dispersal; maximum-entropy; pteridophytes; range sizes; richness; scale; species-area relationship; species richness; species turnover; spermatophytes; spore-producing plants; universality
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