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Abgrall, C., Chauvat, M., Langlois, E., Hedde, M., Mouillot, D., Salmon, S., et al. (2017). Shifts and linkages of functional diversity between above- and below-ground compartments along a flooding gradient. Funct. Ecol., 31(2), 350–360.
Résumé: 1. Trait-based approaches have the potential to reveal general and predictive relationships between organisms and ecosystem functioning. However, the mechanisms underlying the functional structure of communities are still unclear. Within terrestrial ecosystems, several studies have shown that many ecological processes are controlled by the interacting above-and belowground compartments. However, few studies have used traits to reveal the functional relationships between plants and soil fauna. Mostly, research combining plants and soil fauna solely used the traits of one assemblage in predictive studies. 2. Above-ground (plants) and below-ground (Collembola) compartments were sampled over a flooding gradient in northern France along the Seine River. First, we measured the effect of flooding on functional and taxonomic assembly within both communities. We then considered the linkages between plant and Collembolan species richness, community traits and assessed whether traits of both compartments converged at high flooding intensity (abiotic filtering) and diverged when this constraint is released (biotic filtering). 3. Species richness of both taxa followed the same bell-shaped pattern along the gradient, while a similar significant pattern of functional richness was only observed for plants. Further analyses revealed a progressive shift from trait convergence to divergence for plants, but not for Collembola, as constraints intensity decreased. Instead, our results highlighted that Collembola traits were mainly linked to the variations in plant traits. This leads, within Collembola assemblages, to convergence of a subset of perception and habitat-related traits for which the relationship with plant traits was assessed. 4. Synthesis. Using a trait-based approach, our study highlighted that functional relationships occur between above-and below-ground compartments. We underlined that functional composition of plant communities plays a key role in structuring Collembola assemblages in addition to the role of abiotic variables. Our study clearly shows that functional diversity provides a new approach to link the above-and below-ground compartments and might, therefore, be further considered when studying ecological processes at the interface between both compartments.
Mots-Clés: biodiversity; community assembly; community ecology; disturbance; divergence; environmental gradient; feeding guilds; functional traits; microarthropod communities; null models; patterns; plant; plant communities; soil collembola; soil-plant interactions; species traits; trait convergence and trait divergence
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Almoussawi, A., Lenoir, J., Jamoneau, A., Hattab, T., Wasof, S., Gallet-Moron, E., et al. (2019). Forest fragmentation shapes the alpha-gamma relationship in plant diversity. J. Veg. Sci., .
Résumé: Questions Forest fragmentation affects biodiversity locally (alpha diversity) and beyond – at relatively larger scales (gamma diversity) – by increasing dispersal and recruitment limitations. Yet, does an increase in fragmentation affect the relationship between alpha and gamma diversity and what can we learn from it? Location Northern France. Methods We surveyed 116 forest patches across three fragmentation levels: none (continuous forest); intermediate (forest patches connected by hedgerows); and high (isolated forest patches). Plant species richness of both forest specialists and generalists was surveyed at five nested spatial resolutions across each forest patch: 1 m(2); 10 m(2); 100 m(2); 1,000 m(2); and total forest patch area. First, we ran log-ratio models to quantify the alpha-gamma relationship. We did that separately for all possible combinations of fragmentation level (none vs intermediate vs high) x spatial scale (e.g., alpha-1 m(2) vs gamma-10 m(2)) x species type (e.g., alpha-specialists vs gamma-specialists). We then used linear mixed-effects models to analyze the effect of fragmentation level, spatial scale, species type and all two-way interaction terms on the slope coefficient extracted from all log-ratio models. Results We found an interaction effect between fragmentation level and species type, such that forest specialists shifted from a linear (i.e., proportional sampling) to a curvilinear plateau (i.e., community saturation) relationship at low and high fragmentation, respectively, while generalists shifted from a curvilinear to a linear pattern. Conclusions The impact of forest fragmentation on the alpha-gamma relationship supports generalist species persistence over forest specialists, with contrasting mechanisms for these two guilds. As fragmentation increases, forest specialists shift from proportional sampling towards community saturation, thus reducing alpha diversity likely due to dispersal limitation. Contrariwise, generalists shift from community saturation towards proportional sampling, thus increasing alpha diversity likely due to an increase in the edge:core ratio. To ensure long-term conservation of forest specialists, one single large forest patch should be preferred over several small ones.
Mots-Clés: agricultural landscapes; alpha diversity; anthropogenic disturbances; assemblages; community assembly; community patterns; competition; connectivity; dispersal limitations; gamma diversity; habitat conservation strategies; habitat fragmentation; local-regional richness relationship; metacommunity dynamics; regional species richness; relative importance; saturation; specialists; succession
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Amossé, J., Bettarel, Y., Bouvier, C., Bouvier, T., Tran Duc, T., Doan Thu, T., et al. (2013). The flows of nitrogen, bacteria and viruses from the soil to water compartments are influenced by earthworm activity and organic fertilization (compost vs. vermicompost). Soil Biology & Biochemistry, 66, 197–203.
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Andrello, M., Noirot, C., Debarre, F., & Manel, S. (2020). MetaPopGen 2.0: A multilocus genetic simulator to model populations of large size. Mol. Ecol. Resour., .
Résumé: Multilocus genetic processes in subdivided populations can be complex and difficult to interpret using theoretical population genetics models. Genetic simulators offer a valid alternative to study multilocus genetic processes in arbitrarily complex scenarios. However, the use of forward-in-time simulators in realistic scenarios involving high numbers of individuals distributed in multiple local populations is limited by computation time and memory requirements. These limitations increase with the number of simulated individuals. We developed a genetic simulator, MetaPopGen 2.0, to model multilocus population genetic processes in subdivided populations of arbitrarily large size. It allows for spatial and temporal variation in demographic parameters, age structure, adult and propagule dispersal, variable mutation rates and selection on survival and fecundity. We developed MetaPopGen 2.0 in the R environment to facilitate its use by non-modeler ecologists and evolutionary biologists. We illustrate the capabilities of MetaPopGen 2.0 for studying adaptation to water salinity in the striped red mullet Mullus surmuletus.
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Arnaud-Haond, S., van den Beld, I. M. J., Becheler, R., Orejas, C., Menot, L., Frank, N., et al. (2017). Two “pillars” of cold-water coral reefs along Atlantic European margins: Prevalent association of Madrepora oculata with Lophelia pertusa, from reef to colony scale. Deep-Sea Res. Part II-Top. Stud. Oceanogr., 145, 110–119.
Résumé: The scleractinian coral Lophelia pertusa has been the focus of deep-sea research since the recognition of the vast extent of coral reefs in North Atlantic waters two decades ago, long after their existence was mentioned by fishermen. These reefs where shown to provide habitat, concentrate biomass and act as feeding or nursery grounds for many species, including those targeted by commercial fisheries. Thus, the attention given to this cold-water coral (CWC) species from researchers and the wider public has increased. Consequently, new research programs triggered research to determine the full extent of the corals geographic distribution and ecological dynamics of “Lophelia reefs”. The present study is based on a systematic standardised sampling design to analyze the distribution and coverage of CWC reefs along European margins from the Bay of Biscay to Iceland. Based on Remotely Operated Vehicle (ROV) image analysis, we report an almost systematic occurrence of Madrepora oculata in association with L. pertusa with similar abundances of both species within explored reefs, despite a tendency of increased abundance of L. pertusa compared to M. oculata toward higher latitudes. This systematic association occasionally reached the colony scale, with “twin” colonies of both species often observed growing next to each other when isolated structures were occurring offireefs. Finally, several “false chimaera” were observed within reefs, confirming that colonial structures can be “coral bushes” formed by an accumulation of multiple colonies even at the inter-specific scale, with no need for self-recognition mechanisms. Thus, we underline the importance of the hitherto underexplored M. oculata in the Eastern Atlantic, reestablishing a more balanced view that both species and their yet unknown interactions are required to better elucidate the ecology, dynamics and fate of European CWC reefs in a changing environment.
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