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Cahill, A. E., De Jode, A., Dubois, S., Bouzaza, Z., Aurelle, D., Boissin, E., et al. (2017). A multispecies approach reveals hot spots and cold spots of diversity and connectivity in invertebrate species with contrasting dispersal modes. Mol. Ecol., 26(23), 6563–6577.
Résumé: Genetic diversity is crucial for species' maintenance and persistence, yet is often overlooked in conservation studies. Species diversity is more often reported due to practical constraints, but it is unknown if these measures of diversity are correlated. In marine invertebrates, adults are often sessile or sedentary and populations exchange genes via dispersal of gametes and larvae. Species with a larval period are expected to have more connected populations than those without larval dispersal. We assessed the relationship between measures of species and genetic diversity, and between dispersal ability and connectivity. We compiled data on genetic patterns and life history traits in nine species across five phyla. Sampling sites spanned 600km in the northwest Mediterranean Sea and focused on a 50-km area near Marseilles, France. Comparative population genetic approaches yielded three main results. (i) Species without larvae showed higher levels of genetic structure than species with free-living larvae, but the role of larval type (lecithotrophic or planktotrophic) was negligible. (ii) A narrow area around Marseilles, subject to offshore advection, limited genetic connectivity in most species. (iii) We identified sites with significant positive contributions to overall genetic diversity across all species, corresponding with areas near low human population densities. In contrast, high levels of human activity corresponded with a negative contribution to overall genetic diversity. Genetic diversity within species was positively and significantly linearly related to local species diversity. Our study suggests that local contribution to overall genetic diversity should be taken into account for future conservation strategies.
Mots-Clés: genetic diversity; dispersal; life-history traits; reef fishes; marine connectivity; pelagic larval duration; mediterranean sea; amphipholis-squamata; brooding brittle star; coralligenous assemblages; larvae; marine invertebrates; phylogeographical breaks; population structure; population genetic-structure; species genetic diversity correlation
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Coz, R., Ouisse, V., Artero, C., Carpentier, A., Crave, A., Feunteun, E., et al. (2012). Development of a new standardised method for sustainable monitoring of the vulnerable pink sea fan Eunicella verrucosa. Marine Biology, 159(6), 1375–1388.
Résumé: The aim of this survey was to test a standardised method to follow the demographic evolution of a dense aggregative 'forest' population of the temperate gorgonian Eunicella verrucosa (Octocorallia, Gorgoniidae) using in situ photographic recordings. Distribution, density, growth and demographic evolution of the colonies was compared along two parallel transects. Computer treatment allowed the estimation of the total branch fan surface area, and the individual growth of tagged colonies was determined by measuring the increase in this surface area, using consecutive photographs taken at two-year intervals. To integrate the potential bias of branch overlapping, we proposed a correction factor between the in situ photographic surface area and the surface area of the gorgonian calculated from ex situ photographic surface area with all branches deployed. The surface-frequency distribution of colonies was converted to estimated-age-frequency distribution using an estimated growth curve based on the net growth rate. The technique used revealed significant differences in population structure and the dynamics of gorgonian colonies, as the two transects appeared to be influenced by different environmental conditions. The recruitment also seemed to vary according to year and transect, resulting in different densities. Our work showed clear results in characterising the variations of gorgonian demographic evolution at a small spatial scale; thus, it is assumed that this method could be a sustainable tool for coastal environmental managers.
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Cozzoli, F., da Conceicao, T. G., Van Dalen, J., Fang, X., Gjoni, V., Herman, P. M. J., et al. (2020). Biological and physical drivers of bio-mediated sediment resuspension: A flume study on Cerastoderma edule. Estuar. Coast. Shelf Sci., 241, 106824.
Résumé: Predictive models accounting for the effect of bioturbation on sediment resuspension must be based on ecological theory as well as on empirical parametrization. The scaling trend of individual metabolic and activity rates with body mass may be a key to the mechanistic understanding of the observed patterns. With this study we tested if general size scaling rules in bio-mediated sediment resuspension may apply to a broad range of physical contexts for the endobenthic bivalve Cerastoderma edule. The effect on sediment resuspension of populations of C. edule differing by individual size was measured across physical gradients of current velocity and sediment composition in terms of fraction of fine particles. C. edule were able to enhance the resuspension of sediment containing silt, while they had scarce effect on the resuspension of coarse sediment. The effect of bioturbation was maximal at intermediate current velocity, when the hydrodynamic forcing is not strong enough to overcome the abiotic sediment resistance but it is able to suspend the bioturbated sediment. Although differences in sediment silt content and intensities of hydrodynamic stress have a relevant influence in determining the bioturbators individual contribution to sediment resuspension, the observed mass scaling trend is consistent across all treatments and close to theoretical expectation for size scaling of individual metabolic rates. This observation supports the hypothesis that the contribution of individual bioturbators to sediment resuspension is directly related to their energy use. Therefore, the proposed approach allows the formulation of expectations of biotic contribution to sediment resuspension based on the general size scaling laws of individual energy use.
Mots-Clés: Allometry; benthic macroinvertebrates; Bioturbation; bivalves scrobicularia-plana; Body size; Cerastoderma edule; cohesive sediment; Cohesiveness; cross-community approach; current-velocity; ecosystem engineers; metabolic theory; mortality responses; noncohesive sediments; nutrient fluxes; Sediment resuspension
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de Lorgeril, J., Escoubas, J. - M., Loubiere, V., Pernet, F., Le Gall, P., Vergnes, A., et al. (2018). Inefficient immune response is associated with microbial permissiveness in juvenile oysters affected by mass mortalities on field. Fish & Shellfish Immunology, 77, 156–163.
Résumé: Since 2008, juvenile Crassostrea gigas oysters have suffered from massive mortalities in European farming areas. This disease of complex etiology is still incompletely understood. Triggered by an elevated seawater temperature, it has been associated to infections by a herpes virus named OsHV-1 as well as pathogenic vibrios of the Splendidus clade. Ruling out the complexity of the disease, most of our current knowledge has been acquired in controlled experiments. Among the many unsolved questions, it is still ignored what role immunity plays in the capacity oysters have to survive an infectious episode. Here we show that juvenile oysters susceptible to the disease mount an inefficient immune response associated with microbial permissiveness and death. We found that, in contrast to resistant adult oysters having survived an earlier episode of mortality, susceptible juvenile oysters never exposed to infectious episodes died by more than 90% in a field experiment. Susceptible oysters were heavily colonized by OsHV-1 herpes virus as well as bacteria including vibrios potentially pathogenic for oysters, which proliferated in oyster flesh and body fluids during the mortality event. Nonetheless, susceptible oysters were found to sense microbes as indicated by an overexpression of immune receptors and immune signaling pathways. However, they did not express important immune effectors involved in antimicrobial immunity and apoptosis and showed repressed expression of genes involved in ROS and metal homeostasis. This contrasted with resistant oysters, which expressed those important effectors, controlled bacterial and viral colonization and showed 100% survival to the mortality event. Altogether, our results demonstrate that the immune response mounted by susceptible oysters lacks some important immune functions and fails in controlling microbial proliferation. This study opens the way to more holistic studies on the “mass mortality syndrome”, which are now required to decipher the sequence of events leading to oyster mortalities and determine the relative weight of pathogens, oyster genetics and oyster-associated microbiota in the disease.
Mots-Clés: Host pathogen interaction; Innate immunity; Invertebrate; Mollusk; mortality; Total bacteria
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Desvignes, T., Fauvel, C., & Bobe, J. (2011). The nme gene family in zebrafish oogenesis and early development. Naunyn-Schmiedebergs Arch. Pharmacol., 384(4-5), 439–449.
Résumé: After the recent report of the expression of several nme genes in the zebrafish gonads, the present study aimed at further analyzing the expression of nme genes in the ovary with special attention for the nme transcripts that are maternally inherited and could thus participate in the determination of oocyte developmental competence. The expression levels of all groups I and II nme genes were characterized by QPCR in a panel of zebrafish tissues. The nme genes exhibiting an ovarian expression were subsequently monitored throughout oogenesis and early development, and their expression sites characterized using in situ hybridization. Here, we show that nme2b1, nme3, nme4, and nme6 are highly expressed in the ovary and present in the zebrafish oocyte throughout oogenesis. While the four transcripts are maternally inherited, nme3 and nme6 display a typical maternal profile and are detected in the zebrafish early embryo. In contrast to nme3, nme6, abundance exhibits a sharp decrease during early embryogenesis. After zygotic genome activation, we observed an increased expression of nme2b1, nme2b2, nme3, and nme6. The present study provides a comprehensive overview of the expression of nme family members during zebrafish oogenesis and early development. In addition, the maternal origin of two nme transcripts in the early embryo is reported here for the first time in any vertebrate species. Together, our observations suggest an important role of the nme family in oocyte and embryo development in vertebrates.
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