2018

Compte-Port, S., et al. "Metal contaminations impact archaeal community composition, abundance and function in remote alpine lakes." Environ. Microbiol.. 20.7 (2018): 2422–2437.
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2017

Leboulanger, C., et al. "Microbial Diversity and Cyanobacterial Production in Dziani Dzaha Crater Lake, a Unique Tropical Thalassohaline Environment." Plos One. 12.1 (2017): e0168879.
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2012

Bouvier, T., et al. "Contrasted Effects of Diversity and Immigration on Ecological Insurance in Marine Bacterioplankton Communities." PLoS One. 7.6 (2012).
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Caro, A., et al. "Epibiotic bacterial community of Sphaeroma serratum (Crustacea, Isopoda): relationship with molt status." Mar. Ecol.-Prog. Ser.. 457 (2012): 11–27.
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Durand, J. D., et al. "Systematics of the grey mullets (Teleostei: Mugiliformes: Mugilidae): Molecular phylogenetic evidence challenges two centuries of morphology-based taxonomy." Mol. Phylogenet. Evol.. 64.1 (2012): 73–92.
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2011

Auguet, J. C., et al. "Seasonal changes of freshwater ammonia-oxidizing archaeal assemblages and nitrogen species in oligotrophic alpine lakes." Appl Environ Microbiol. 77.6 (2011): 1937–1945.
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Barberan, A., et al. "Phylogenetic ecology of widespread uncultured clades of the Kingdom Euryarchaeota." Mol Ecol. 20.9 (2011): 1988–1996.
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2010

Auguet, J. C., A. Barberan, and E. O. Casamayor. "Global ecological patterns in uncultured Archaea." Isme J. 4.2 (2010): 182–190.
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Lliros, M., et al. "Vertical distribution of ammonia-oxidizing crenarchaeota and methanogens in the epipelagic waters of Lake Kivu (Rwanda-Democratic Republic of the Congo)." Appl Environ Microbiol. 76.20 (2010): 6853–6863.
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2009

Auguet, J. C., et al. "Potential effect of freshwater virus on the structure and activity of bacterial communities in the Marennes-Oleron Bay (France)." Microb Ecol. 57.2 (2009): 295–306.
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2008

Auguet, J. C., and E. O. Casamayor. "A hotspot for cold crenarchaeota in the neuston of high mountain lakes." Environ Microbiol. 10.4 (2008): 1080–1086.
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