2019

Alfonso, S., et al. "Examining multi- and transgenerational behavioral and molecular alterations resulting from parental exposure to an environmental PCB and PBDE mixture." Aquat. Toxicol.. 208 (2019): 29–38.
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de Verdal, H., et al. "Agonistic behaviour and feed efficiency in juvenile Nile tilapia Oreochromis niloticus." Aquaculture. 505 (2019): 271–279.
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Meddeb, M., et al. "A new type of plankton food web functioning in coastal waters revealed by coupling Monte Carlo Markov chain linear inverse method and ecological network analysis." Ecol. Indic.. 104 (2019): 67–85.
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Trenkel, V. M., et al. "We can reduce the impact of scientific trawling on marine ecosystems." Marine Ecology Progress Series. 609 (2019): 277–282.
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Vandeputte, M., P. - A. Gagnaire, and F. Allal. "The European sea bass: a key marine fish model in the wild and in aquaculture." Animal Genetics (2019).
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2018

Anastasiadi, D., et al. "Dynamic epimarks in sex-related genes predict gonad phenotype in the European sea bass, a fish with mixed genetic and environmental sex determination." Epigenetics. 13.9 (2018): 988–1011.
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Bailleul, D., et al. "Large-scale genetic panmixia in the blue shark (Prionace glauca): A single worldwide population, or a genetic lag-time effect of the “grey zone” of differentiation?" Evolutionary Applications. 11.5 (2018): 614–630.
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Bettarel, Y., et al. "Corallivory and the microbial debacle in two branching scleractinians." Isme J.. 12.4 (2018): 1109–1126.
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Chiarello, M., et al. "Skin microbiome of coral reef fish is highly variable and driven by host phylogeny and diet." Microbiome. 6 (2018): 147.
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Courbin, N., et al. "Short-term prey field lability constrains individual specialisation in resource selection and foraging site fidelity in a marine predator." Ecol. Lett.. 21.7 (2018): 1043–1054.
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Dalongeville, A., et al. "Geographic isolation and larval dispersal shape seascape genetic patterns differently according to spatial scale." Evol. Appl.. 11.8 (2018): 1437–1447.
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Dalongeville, A., et al. "Combining six genome scan methods to detect candidate genes to salinity in the Mediterranean striped red mullet (Mullus surmuletus)." BMC Genomics. 19 (2018): 217.
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Descombes, P., et al. "Linking species diversification to palaeo-environmental changes: A process-based modelling approach." Glob. Ecol. Biogeogr.. 27.2 (2018): 233–244.
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Duval, C., et al. "Phylogeny and salt-tolerance of freshwater Nostocales strains: Contribution to their systematics and evolution." Harmful Algae. 73 (2018): 58–71.
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Galiana, N., et al. "The spatial scaling of species interaction networks." Nat. Ecol. Evol.. 2.5 (2018): 782–790.
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Krichen, E., et al. "High biomass density promotes density-dependent microbial growth rate." Biochem. Eng. J.. 130 (2018): 66–75.
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Legras, G., N. Loiseau, and J. - C. Gaertner. "Functional richness: Overview of indices and underlying concepts." Acta Oecol.-Int. J. Ecol.. 87 (2018): 34–44.
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Magris, R. A., et al. "Biologically representative and well-connected marine reserves enhance biodiversity persistence in conservation planning." Conserv. Lett.. 11.4 (2018): Unsp-e12439.
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Meddeb, M., et al. "Plankton food-web functioning in anthropogenically impacted coastal waters (SW Mediterranean Sea): an ecological network analysis." Progress in Oceanography (2018).
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Milner-Gulland, E. J., et al. "Translating the terrestrial mitigation hierarchy to marine megafauna by-catch." Fish. Fish.. 19.3 (2018): 547–561.
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Miloslavich, P., et al. "Essential ocean variables for global sustained observations of biodiversity and ecosystem changes." Global Change Biology. 24.6 (2018): 2416–2433.
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Muller-Karger, F. E., et al. "Advancing Marine Biological Observations and Data Requirements of the Complementary Essential Ocean Variables (EOVs) and Essential Biodiversity Variables (EBVs) Frameworks." Front. Mar. Sci.. 5 (2018).
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Sy, M. M., et al. "Identifying Consensus on Coastal Lagoons Ecosystem Services and Conservation Priorities for an Effective Decision Making: A Q Approach." Ecological Economics. 154 (2018): 1–13.
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Thiebault, A., et al. "“M2B” package in R: Deriving multiple variables from movement data to predict behavioural states with random forests." Methods Ecol. Evol.. 9.6 (2018): 1548–1555.
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Villon, S., et al. "A Deep learning method for accurate and fast identification of coral reef fishes in underwater images." Ecol. Inform.. 48 (2018): 238–244.
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Wasof, S., et al. "Dominance of individual plant species is more important than diversity in explaining plant biomass in the forest understorey." J. Veg. Sci.. 29.3 (2018): 521–531.
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2017

Albouy, C., et al. "Multifaceted biodiversity hotspots of marine mammals for conservation priorities." Diversity Distrib. 23.6 (2017): 615–626.
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Arnaud-Haond, S., et al. "Entangled fates of holobiont genomes during invasion: nested bacterial and host diversities in Caulerpa taxifolia." Mol. Ecol.. 26.8 (2017): 2379–2391.
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Barnagaud, J. - Y., et al. "Biogeographical, environmental and anthropogenic determinants of global patterns in bird taxonomic and trait turnover." Glob. Ecol. Biogeogr.. 26.10 (2017): 1190–1200.
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Becheler, R., et al. "Low incidence of clonality in cold water corals revealed through the novel use of a standardized protocol adapted to deep sea sampling." Deep-Sea Res. Part II-Top. Stud. Oceanogr.. 145 (2017): 120–130.
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Ben Abdelkrim, A., et al. "A landscape genetic analysis of important agricultural pest species in Tunisia: The whitefly Bemisia tabaci." Plos One. 12.10 (2017): e0185724.
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Cahill, A. E., et al. "A multispecies approach reveals hot spots and cold spots of diversity and connectivity in invertebrate species with contrasting dispersal modes." Mol. Ecol.. 26.23 (2017): 6563–6577.
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Coll, M., and J. Steenbeek. "Standardized ecological indicators to assess aquatic food webs: The ECOIND software plug-in for Ecopath with Ecosim models." Environ. Modell. Softw.. 89 (2017): 120–130.
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de Verdal, H., et al. "Improving feed efficiency in fish using selective breeding: a review." Rev Aquacult (2017).
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de Verdal, H., et al. "Measuring individual feed efficiency and its correlations with performance traits in Nile tilapia, Oreochromis niloticus." Aquaculture. 468 (2017): 489–495.
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Diankha, O., et al. "Studying the contribution of different fishing gears to the Sardinella small-scale fishery in Senegalese waters." Aquat. Living Resour.. 30 (2017): 27.
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Doan, K. Q., et al. "Genetic variation of resistance to Viral Nervous Necrosis and genetic correlations with production traits in wild populations of the European sea bass (Dicentrarchus labrax)." Aquaculture. 478 (2017): 1–8.
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Doan, K. Q., et al. "Viral encephalopathy and retinopathy in aquaculture: a review." J Fish Dis. 40.5 (2017): 717–742.
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Durand, J. - D., et al. "DNA barcoding grey mullets." Rev. Fish. Biol. Fish.. 27.1 (2017): 233–243.
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Grzebyk, D., et al. "Insights into the harmful algal flora in northwestern Mediterranean coastal lagoons revealed by pyrosequencing metabarcodes of the 28S rRNA gene." Harmful Algae. 68 (2017): 1–16.
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Haffray, P., et al. "CAN SELECTIVE BREEDING FOR GROWTH OR FILLET YIELD DECREASE ENVIRONMENTAL IMPACT OF FISH FARMING? A GILTHEAD SEA BREAM (Sparus aurata) CASE STUDY." Aquaculture. 472 (2017): 96.
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Hillen, J. E. J., et al. "Estimates of genetic variability and inbreeding in experimentally selected populations of European sea bass." Aquaculture. 479 (2017): 742–749.
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Massol, F., et al. "Island Biogeography of Food Webs." Eds. D. A. Bohan, A. J. Dumbrell, and F. Massol. Networks of Invasion: A Synthesis of Concepts, 56. San Diego: Elsevier Academic Press Inc, 2017. 183–262.
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Pirog, A., et al. "First evidence of multiple paternity in the bull shark (Carcharhinus leucas)." Mar. Freshw. Res.. 68.1 (2017): 195–201.
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Tran, T. T. V., L. K. Phan, and J. - D. Durand. "Diversity and distribution of cryptic species within the Mugil cephalus species complex in Vietnam." Mitochondrial DNA Part A. 28.4-5 (2017): 493–501.
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Vandeputte, M., et al. "Does early growth play a role in the sex determination of european SEABASS Dicentrarchus labrax?" Aquaculture. 472 (2017): 114.
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Vandeputte, M., et al. "Investigation of morphological predictors of fillet and carcass yield in European sea bass (Dicentrarchus labrax) for application in selective breeding." Aquaculture. 470 (2017): 40–49.
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Villeger, S., Eva Maire, and F. Leprieur. "On the risks of using dendrograms to measure functional diversity and multidimensional spaces to measure phylogenetic diversity: a comment on Sobral et al. (2016)." Ecol. Lett.. 20.4 (2017): 554–557.
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Violle, C., et al. "Functional Rarity: The Ecology of Outliers." Trends Ecol. Evol.. 32.5 (2017): 356–367.
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2016

Bailleul, D., S. Stoeckel, and S. Arnaud-Haond. "RClone: a package to identify MultiLocus Clonal Lineages and handle clonal data sets in r." Methods Ecol. Evol.. 7.8 (2016): 966–970.
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Borsa, P., et al. "Comparative phylogeography of the western Indian Ocean reef fauna." Acta Oecologica (2016): 72–86.
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Boyd, C., et al. "Effectiveness of social information used by seabirds searching for unpredictable and ephemeral prey." Behav. Ecol.. 27.4 (2016): 1223–1234.
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Cazelles, K., et al. "On the integration of biotic interaction and environmental constraints at the biogeographical scale." Ecography. 39.10 (2016): 921–931.
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Dalongeville, A., et al. "Ecological traits shape genetic diversity patterns across the Mediterranean Sea: a quantitative review on fishes." J. Biogeogr.. 43.4 (2016): 845–857.
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Dubois, M., et al. "Linking basin-scale connectivity, oceanography and population dynamics for the conservation and management of marine ecosystems." Glob. Ecol. Biogeogr.. 25.5 (2016): 503–515.
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Guinand, B., et al. "Candidate gene variation in gilthead sea bream reveals complex spatiotemporal selection patterns between marine and lagoon habitats." Marine Ecology Progress Series. 558 (2016): 115–127.
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Heymans, J. J., et al. "Best practice in Ecopath with Ecosim food-web models for ecosystem-based management." Ecol. Model.. 331 (2016): 173–184.
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Ituarte, R. B., et al. "Immunolocalization and expression of Na+/K+ -ATPase in embryos, early larval stages and adults of the freshwater shrimp Palaemonetes argentinus (Decapoda, Caridea, Palaemonidae)." Cell Tissue Res.. 364.3 (2016): 527–541.
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Jeanbille, M., et al. "Response of Core Microbial Consortia to Chronic Hydrocarbon Contaminations in Coastal Sediment Habitats." Front. Microbiol. (2016): 1637.
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Leprieur, F., et al. "Historical and contemporary determinants of global phylogenetic structure in tropical reef fish faunas." Ecography. 39.9 (2016): 825–835.
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Mouillot, D., et al. "Global marine protected areas do not secure the evolutionary history of tropical corals and fishes." Nat. Commun.. 7 (2016): 10359.
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Pirog, A., et al. "Isolation and characterization of eight microsatellite loci from Galeocerdo cuvier (tiger shark) and cross-amplification in Carcharhinus leucas, Carcharhinus brevipinna, Carcharhinus plumbeus and Sphyrna lewini." PeerJ. 4 (2016): e2041.
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Reichel, K., et al. "Rare sex or out of reach equilibrium? The dynamics of F-IS in partially clonal organisms." BMC Genet.. 17 (2016): 76.
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Strauß, A., et al. "Opposing Patterns of Seasonal Change in Functional and Phylogenetic Diversity of Tadpole Assemblages." Plos One. 11.3 (2016): e0151744.
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Thiebault, A., et al. "Seabird acoustic communication at sea: a new perspective using bio-logging devices." Sci Rep. 6 (2016): 30972.
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Thiebault, A., et al. "How to capture fish in a school? Effect of successive predator attacks on seabird feeding success." J Anim Ecol. 85.1 (2016): 157–167.
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Villon, S., et al. "Coral Reef Fish Detection and Recognition in Underwater Videos by Supervised Machine Learning: Comparison Between Deep Learning and HOG plus SVM Methods." Eds. J. BlancTalon, et al. Advanced Concepts for Intelligent Vision Systems, Acivs 2016, 10016. Cham: Springer Int Publishing Ag, 2016. 160–171.
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Viricel, A., et al. "Habitat availability and geographic isolation as potential drivers of population structure in an oceanic dolphin in the Southwest Indian Ocean." Mar. Biol.. 163.10 (2016): 219.
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2015

Albouy, C., et al. "FishMed: traits, phylogeny, current and projected species distribution of Mediterranean fishes, and environmental data." Ecology. 96.8 (2015): 2312–2313.
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Granger, V., et al. "Large-scale spatio-temporal monitoring highlights hotspots of demersal fish diversity in the Mediterranean Sea." Progress in Oceanography. 130 (2015): 65–74.
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Guilhaumon, F., et al. "Representing taxonomic, phylogenetic and functional diversity: new challenges for Mediterranean marine-protected areas." Diversity Distrib.. 21.2 (2015): 175–187.
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Hattab, T., et al. "A biogeographical regionalization of coastal Mediterranean fishes." Journal of Biogeography. 42.7 (2015): 1336–1348.
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KIVELA, M., S. ARNAUD-HAOND, and J. SARAMAKI. "EDENetworks: A user-friendly software to build and analyse networks in biogeography, ecology and population genetics." Molecular Ecology Resources. 15.1 (2015): 117–122.
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Langlois, J., et al. "Sea use impact category in life cycle assessment : characterization factors for life support functions." International Journal of Life Cycle Assessment. 20.7 (2015): 970–981.
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Mazel, F., et al. "Mammalian phylogenetic diversity-area relationships at a continental scale." Ecology. 96.10 (2015): 2814–2822.
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Putman, N. F., et al. "Magnetic navigation behavior and the oceanic ecology of young loggerhead sea turtles." J Exp Biol. 218.7 (2015): 1044–1050.
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Turon, V., et al. "Use of fermentative metabolites for heterotrophic microalgae growth: Yields and kinetics." Bioresource Technology. 175 (2015): 342–349.
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Weber, A. A. - T., et al. "Influence of the larval phase on connectivity: strong differences in the genetic structure of brooders and broadcasters in the Ophioderma longicauda species complex." Mol Ecol. 24.24 (2015): 6080–6094.
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2014

Anderson, P. S. L., T. Claverie, and S. N. Patek. "Levers And Linkages: Mechanical Trade-Offs In A Power-Amplified System." Evolution. 68.7 (2014): 1919–1933.
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ARNAUD-HAOND, S., et al. "Disentangling the Influence of Mutation and Migration in Clonal Seagrasses Using the Genetic Diversity Spectrum for Microsatellites." Journal Of Heredity. 105.4 (2014): 532–541.
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BECHELER, R., et al. "Scaling of processes shaping the clonal dynamics and genetic mosaic of seagrasses through temporal genetic monitoring." Heredity. 112.2 (2014): 114–121.
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BROGGIATO, A., et al. "Fair and equitable sharing of benefits from the utilization of marine genetic resources in areas beyond national jurisdiction: Bridging the gaps between science and policy." Marine Policy. 49 (2014): 176–185.
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Canard, E. F., et al. "Empirical Evaluation of Neutral Interactions in Host-Parasite Networks." American Naturalist. 183.4 (2014): 468–479.
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Langlois, J., et al. "New methods for impact assessment of biotic-resource depletion in life cycle assessment of fisheries : theory and application." Journal of Cleaner Production. 73 (2014): 63–71.
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Mazel, F., et al. "Multifaceted diversity-area relationships reveal global hotspots of mammalian species, trait and lineage diversity." Global Ecology and Biogeography. 23.8 (2014): 836–847.
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Pool, T. K., G. Grenouillet, and S. Villeger. "Species contribute differently to the taxonomic, functional, and phylogenetic alpha and beta diversity of freshwater fish communities." Diversity and Distributions. 20.11 (2014): 1235–1244.
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Rishworth, G. M., et al. "An automated approach towards measuring time-activity budgets in colonial seabirds." Methods Ecol Evol. 5.9 (2014): 854–863.
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Thiebault, A., et al. "Local enhancement in a seabird: reaction distances and foraging consequence of predator aggregations." Behavioral Ecology. 25.6 (2014): 1302–1310.
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Valladares, F., et al. "The effects of phenotypic plasticity and local adaptation on forecasts of species range shifts under climate change." Ecology Letters. 17.11 (2014): 1351–1364.
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Zilius, M., et al. "Feedback Mechanisms Between Cyanobacterial Blooms, Transient Hypoxia, and Benthic Phosphorus Regeneration in Shallow Coastal Environments." Estuaries and Coasts. 37.3 (2014): 680–694.
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Zupan, L., et al. "Spatial mismatch of phylogenetic diversity across three vertebrate groups and protected areas in Europe." Diversity and Distributions. 20.6 (2014): 674–685.
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2013

Gravel, D., et al. "Inferring food web structure from predator-prey body size relationships." Methods in Ecology and Evolution. 4.11 (2013): 1083–1090.
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MILLER, M. J., et al. "Comparisons of catches of large leptocephali using an IKMT and a large pelagic trawl in the Sargasso Sea." Marine Biodiversity. 43.4 (2013): 493–501.
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Patino, J., et al. "Accounting for data heterogeneity in patterns of biodiversity: an application of linear mixed effect models to the oceanic island biogeography of spore-producing plants." Ecography. 36.8 (2013): 904–913.
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2012

Caro, A., et al. "Epibiotic bacterial community of Sphaeroma serratum (Crustacea, Isopoda): relationship with molt status." Mar. Ecol.-Prog. Ser.. 457 (2012): 11–27.
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Carteron, A., et al. "Assessing the efficiency of clustering algorithms and goodness-of-fit measures using phytoplankton field data." Ecol. Inform.. 9 (2012): 64–68.
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Guilhaumon, F., et al. "Latitudinal mismatches between the components of mammal-flea interaction networks." Glob. Ecol. Biogeogr.. 21.7 (2012): 725–731.
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Mouquet, N., et al. "Ecophylogenetics: advances and perspectives." Biological Reviews. 87.4 (2012): 769–785.
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Poisot, T., et al. "The dissimilarity of species interaction networks." Ecology Letters. 15.12 (2012): 1353–1361.
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Pommier, T., E. J. P. Douzery, and D. Mouillot. "Environment drives high phylogenetic turnover among oceanic bacterial communities." Biol. Lett.. 8.4 (2012): 562–566.
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Putman, N. F., et al. "Simulating transoceanic migrations of young loggerhead sea turtles : merging magnetic navigation behavior with an ocean circulation model." Journal of Experimental Biology. 215.11 (2012): 1863–1870.
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van der Heide, T., et al. "A three-stage symbiosis forms the foundation of seagrass ecosystems." Science. 336 (2012): 1432–1434.
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2011

Auguet, J. C., et al. "Seasonal changes of freshwater ammonia-oxidizing archaeal assemblages and nitrogen species in oligotrophic alpine lakes." Appl Environ Microbiol. 77.6 (2011): 1937–1945.
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Barberan, A., et al. "Phylogenetic ecology of widespread uncultured clades of the Kingdom Euryarchaeota." Mol Ecol. 20.9 (2011): 1988–1996.
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Joo, R., et al. "Optimization of an artificial neural network for identifying fishing set positions from VMS data : an example from the Peruvian anchovy purse seine fishery." Ecological Modelling. 222 (2011): 1048–1059.
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2010

Auguet, J. C., A. Barberan, and E. O. Casamayor. "Global ecological patterns in uncultured Archaea." Isme J. 4.2 (2010): 182–190.
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Duboz, R., et al. "Application of an evolutionary algorithm to the inverse parameter estimation of an individual-based model." Ecological Modelling. 221 (2010): 840–849.
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Fleury, E., et al. "Microarray-Based Identification of Gonad Transcripts Differentially Expressed Between Lines of Pacific Oyster Selected to Be Resistant or Susceptible to Summer Mortality." Mar. Biotechnol.. 12.3 (2010): 326–339.
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Lliros, M., et al. "Vertical distribution of ammonia-oxidizing crenarchaeota and methanogens in the epipelagic waters of Lake Kivu (Rwanda-Democratic Republic of the Congo)." Appl Environ Microbiol. 76.20 (2010): 6853–6863.
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2009

Auguet, J. C., et al. "Potential effect of freshwater virus on the structure and activity of bacterial communities in the Marennes-Oleron Bay (France)." Microb Ecol. 57.2 (2009): 295–306.
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FROMENTIN, J. - M., et al. "Importance and future of individual markers for the ecosystem approach to fisheries." Aquatic Living Resources. 22.4 (2009): 395–408.
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Kolasinski, J., et al. "Feeding ecology and ontogenetic dietary shift of yellowstripe goatfish Mulloidichthys flavolineatus (Mullidae) at Reunion Island, SW Indian Ocean." Marine Ecology – Progress Series. 386 (2009): 181–195.
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Mullon, C., et al. "Modeling the global fishmeal and fish oil markets." Natural Resource Modeling. 22.4 (2009): 564–609.
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