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de Lorgeril, J., Escoubas, J. - M., Loubiere, V., Pernet, F., Le Gall, P., Vergnes, A., et al. (2018). Inefficient immune response is associated with microbial permissiveness in juvenile oysters affected by mass mortalities on field. Fish & Shellfish Immunology, 77, 156–163.
Résumé: Since 2008, juvenile Crassostrea gigas oysters have suffered from massive mortalities in European farming areas. This disease of complex etiology is still incompletely understood. Triggered by an elevated seawater temperature, it has been associated to infections by a herpes virus named OsHV-1 as well as pathogenic vibrios of the Splendidus clade. Ruling out the complexity of the disease, most of our current knowledge has been acquired in controlled experiments. Among the many unsolved questions, it is still ignored what role immunity plays in the capacity oysters have to survive an infectious episode. Here we show that juvenile oysters susceptible to the disease mount an inefficient immune response associated with microbial permissiveness and death. We found that, in contrast to resistant adult oysters having survived an earlier episode of mortality, susceptible juvenile oysters never exposed to infectious episodes died by more than 90% in a field experiment. Susceptible oysters were heavily colonized by OsHV-1 herpes virus as well as bacteria including vibrios potentially pathogenic for oysters, which proliferated in oyster flesh and body fluids during the mortality event. Nonetheless, susceptible oysters were found to sense microbes as indicated by an overexpression of immune receptors and immune signaling pathways. However, they did not express important immune effectors involved in antimicrobial immunity and apoptosis and showed repressed expression of genes involved in ROS and metal homeostasis. This contrasted with resistant oysters, which expressed those important effectors, controlled bacterial and viral colonization and showed 100% survival to the mortality event. Altogether, our results demonstrate that the immune response mounted by susceptible oysters lacks some important immune functions and fails in controlling microbial proliferation. This study opens the way to more holistic studies on the “mass mortality syndrome”, which are now required to decipher the sequence of events leading to oyster mortalities and determine the relative weight of pathogens, oyster genetics and oyster-associated microbiota in the disease.
Mots-Clés: Host pathogen interaction; Innate immunity; Invertebrate; Mollusk; mortality; Total bacteria
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Fouilland, E., Galès, A., Beaugelin, I., Lanouguère, E., Pringault, O., & Leboulanger, C. (2018). Influence of bacteria on the response of microalgae to contaminant mixtures. Chemosphere, 211, 449–455.
Résumé: When microalgae are exposed to contaminants, the role of associated bacteria within the phycosphere, the microenvironment surrounding algal cells, remains largely unknown. The present study investigated the importance of algae-associated bacteria on the responses of microalgae growth to metallic and organic toxicant exposure. The effects of a polluted sediment elutriate, and of metal or pesticide mixtures at environmentally relevant concentrations (<10 μg L−1) were assessed on the growth of two microalgae strains: Isochrysis galbana, a prymnesiophyte, and Thalassiosira delicatula, a centric diatom. Both cultures were maintained as axenic or bacterized under similar conditions in batch cultures. In axenic conditions, the metal mixture addition at low concentrations alleviated limitation of growth by metals for T. delicatula relative to control, but inhibited I. galbana growth at highest concentration. In similar axenic conditions, both T. delicatula and I. galbana growth were negatively inhibited by pesticide mixture at concentrations as low as 10 ng L−1. The bacterial diversities associated with the two microalgae strains were significantly different (Bray–Curtis dissimilarity greater than 0.9) but their impact on microalgae growth was similar. The presence of bacteria reduced algal growth rate by ca. 50% compared to axenic cultures, whereas no significant effect of sediment elutriate, metal or pesticide mixtures was noticed on non-axenic algal growth rates. These results show that bacteria may have a negative effect on algal growth but can reduce pesticide toxicity or metal availability to algae.
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Fouilland, E., Tolosa, I., Bonnet, D., Bouvier, C., Bouvier, T., Bouvy, M., et al. (2014). Bacterial carbon dependence on freshly produced phytoplankton exudates under different nutrient availability and grazing pressure conditions in coastal marine waters. FEMS microbiology ecology, 87(3), 757–769.
Résumé: The effects of grazing pressure and inorganic nutrient availability on the direct carbon transfer from freshly produced phytoplankton exudates to heterotrophic bacteria biomass production were studied in Mediterranean coastal waters. The short-term incorporation of (1)(3)C (H(1)(3)CO(3)) in phytoplankton and bacterial lipid biomarkers was measured as well as the total bacterial carbon production (BP), viral lysis and the microbial community structure under three experimental conditions: (1) High inorganic Nutrient and High Grazing (HN + HG), (2) High inorganic Nutrient and Low Grazing (HN + LG) and (3) under natural in situ conditions with Low inorganic Nutrient and High Grazing (LN + HG) during spring. Under phytoplankton bloom conditions (HN + LG), the bacterial use of freshly produced phytoplankton exudates as a source of carbon, estimated from (1)(3)C enrichment of bacterial lipids, contributed more than half of the total bacterial production. However, under conditions of high grazing pressure on phytoplankton with or without the addition of inorganic nutrients (HN + HG and LN + HG), the (1)(3)C enrichment of bacterial lipids was low compared with the high total bacterial production. BP therefore seems to depend mainly on freshly produced phytoplankton exudates during the early phase of phytoplankton bloom period. However, BP seems mainly relying on recycled carbon from viral lysis and predators under high grazing pressure.
Mots-Clés: bacteria; carbon coupling; coastal waters; interactions; phytoplankton
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Galiana, N., Lurgi, M., Claramunt-Lopez, B., Fortin, M. - J., Leroux, S., Cazelles, K., et al. (2018). The spatial scaling of species interaction networks. Nat. Ecol. Evol., 2(5), 782–790.
Résumé: Species-area relationships (SARs) are pivotal to understand the distribution of biodiversity across spatial scales. We know little, however, about how the network of biotic interactions in which biodiversity is embedded changes with spatial extent. Here we develop a new theoretical framework that enables us to explore how different assembly mechanisms and theoretical models affect multiple properties of ecological networks across space. We present a number of testable predictions on network-area relationships (NARs) for multi-trophic communities. Network structure changes as area increases because of the existence of different SARs across trophic levels, the preferential selection of generalist species at small spatial extents and the effect of dispersal limitation promoting beta-diversity. Developing an understanding of NARs will complement the growing body of knowledge on SARs with potential applications in conservation ecology. Specifically, combined with further empirical evidence, NARs can generate predictions of potential effects on ecological communities of habitat loss and fragmentation in a changing world.
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Gravel, D., Poisot, T., Albouy, C., Velez, L., & Mouillot, D. (2013). Inferring food web structure from predator-prey body size relationships. Methods in Ecology and Evolution, 4(11), 1083–1090.
Résumé: 1. Current global changes make it important to be able to predict which interactions will occur in the emerging ecosystems. Most of the current methods to infer the existence of interactions between two species require a good knowledge of their behaviour or a direct observation of interactions. In this paper, we overcome these limitations by developing a method, inspired from the niche model of food web structure, using the statistical relationship between predator and prey body size to infer the matrix of potential interactions among a pool of species. 2. The novelty of our approach is to infer, for any species of a given species pool, the three species-specific parameters of the niche model. The method applies to both local and metaweb scales. It allows one to evaluate the feeding interactions of a new species entering the community. 3. We find that this method gives robust predictions of the structure of food webs and that its efficiency is increased when the strength of the body-size relationship between predators and preys increases. 4. We finally illustrate the potential of the method to infer the metaweb structure of pelagic fishes of the Mediterranean sea under different global change scenarios.
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