Résumé: In the early 2000s, Senegal set up several Marine Protected Areas (MPAs) along its coastal zone with the purpose of biodiversity conservation and to support sustainable management of fisheries. However, the impact of MPAs may vary according to the type of fisheries. In Senegal, the sardinella fishery accounts for 70% of total catches. This fishery is of crucial importance for national food security and employment. Given this importance, it is necessary to evaluate the impact of MPAs, often being considered as a tool for fisheries management. An analytical, dynamic and spatial bio-economic model of sardinella fishery, considering fish and fisher migration, has been developed and scenarios over forty years have been analyzed. The results show that the fishery is economically overexploited and that Senegal could lose about 11.6 billion CFA over forty years of exploitation, i.e. 290 million CFA per year. To achieve an optimal level of exploitation, it would be necessary to halve the current fishing capacity. Implementing MPAs for 10, 20 and 30% of the Senegalese exclusive economic zone lead to slight increases in biomass (1%) and rent (5-11%). In addition, spatio-temporal closures can lead to increased exploitation in unclosed areas, due to the absence of enforcement. Achieving target 11 of the Aichi Convention, i.e., 10% of coastal and marine areas protected per country, will have a reserve effect on the resource but also only lead to weak improvements in economic indicators for the Senegalese fishery. Finally, because the sardinella resource is shared among many countries of the Sub-Regional Fisheries Commission (SRFC), a sub-regional cooperation is necessary for a sustainable management.

Résumé: Bycatch in fisheries can have profound effects on the abundance of species with relatively low resilience to increased mortality, can alter the evolutionary characteristics and concomitant fitness of affected populations through heritable trait-based selective removals, and can alter ecosystem functions, structure and services through food web trophic links. We challenge current piecemeal bycatch management paradigms, which reduce the mortality of one taxon of conservation concern at the unintended expense of others. Bycatch mitigation measures may also reduce intraspecific genetic diversity. We drew examples of broadly prescribed ‘best practice’ methods to mitigate bycatch that result in unintended cross-taxa conflicts from pelagic longline, tuna purse seine, gillnet and trawl fisheries. We identified priority improvements in data quality and in understanding ecological effects of bycatch fishing mortality to support holistic ecological risk assessments of the effects of bycatch removals conducted through semi-quantitative and model-based approaches. A transition to integrated bycatch assessment and management that comprehensively consider biodiversity across its hierarchical manifestations is needed, where relative risks and conflicts from alternative bycatch management measures are evaluated and accounted for in fisheries decision-making processes. This would enable managers to select measures with intentional and acceptable tradeoffs to best meet objectives, when conflicts are unavoidable.

Résumé: Around 2008, an ecosystem shift occurred in the Gulf of Lions, highlighted by considerable changes in biomass and fish mean weight of its two main small pelagic fish stocks (European anchovy, Engraulis encrasicolus; European sardine, Sardina pilchardus). Surprisingly these changes did not appear to be mediated by a decrease in fish recruitment rates (which remained high) or by a high fishing pressure (exploitation rates being extremely low). Here, we review the current knowledge on the population's dynamics and its potential causes. We used an integrative ecosystem approach exploring alternative hypotheses, ranging from bottom-up to top-down control, not forgetting epizootic diseases. First, the study of multiple population characteristics highlighted a decrease in body condition for both species as well as an important decrease in size resulting from both a slower growth and a progressive disappearance of older sardines. Interestingly, older sardines were more affected by the decrease in condition than younger ones, another sign of an unbalanced population structure. While top-down control by bluefin tuna or dolphins, emigration and disease were mostly discarded as important drivers, bottom-up control mediated by potential changes in the plankton community appeared to play an important role via a decrease in fish energy income and hence growth, condition and size. Isotopic and stomach content analyses indicated a dietary shift pre- and post-2008 and modeled mesozooplankton abundance was directly linked to fish condition. Despite low energy reserves from 2008 onwards, sardines and anchovies maintained if not increased their reproductive investment, likely altering the life-history trade-off between reproduction and survival and resulting in higher natural mortality. The current worrying situation might thus have resulted from changes in plankton availability/diversity, which remains to be thoroughly investigated together with fish phenotypic plasticity.

Résumé: The blue shark Prionace glauca, among the most common and widely studied pelagic sharks, is a top predator, exhibiting the widest distribution range. However, little is known about its population structure and spatial dynamics. With an estimated removal of 10–20 million individuals per year by fisheries, the species is classified as “Near Threatened” by International Union for Conservation of Nature. We lack the knowledge to forecast the long-term consequences of such a huge removal on this top predator itself and on its trophic network. The genetic analysis of more than 200 samples collected at broad scale (from Mediterranean Sea, North Atlantic and Pacific Oceans) using mtDNA and nine microsatellite markers allowed to detect signatures of genetic bottlenecks but a nearly complete genetic homogeneity across the entire studied range. This apparent panmixia could be explained by a genetic lag-time effect illustrated by simulations of demographic changes that were not detectable through standard genetic analysis before a long transitional phase here introduced as the “population grey zone.” The results presented here can thus encompass distinct explanatory scenarios spanning from a single demographic population to several independent populations. This limitation prevents the genetic-based delineation of stocks and thus the ability to anticipate the consequences of severe depletions at all scales. More information is required for the conservation of population(s) and management of stocks, which may be provided by large-scale sampling not only of individuals worldwide, but also of loci genomewide.

Résumé: The French initial assessment of the Marine Strategy Framework Directive (MSFD) highlighted the lack of reliable data concerning offshore areas. During the planning of the monitoring programmes, the scientists therefore proposed to partially cover this gap by using existing fisheries research vessel surveys deployed for the purposes of the Common Fisheries Policy (CFP). This paper describes ways of improving the effectiveness of these surveys and making them better suited to delivering the information needed for the MSFD. The process took two years and became operational at the beginning of the year 2016. Testing phases from October 2013 to August 2015 had to be organized to fit within the ongoing fisheries tasks without significantly increasing the workload in terms of both time and human resources. Six fisheries research surveys henceforth collect new data, with or without additional sampling techniques. Specific examples are given with litter and hydrological data which will be used to assess the environmental status of French marine waters. The paper also identifies certain limitations regarding this approach. This French experiment enabled more efficient and effective use of current data collection efforts, while optimising vessel time and implementing an ecosystem approach in collecting data for fisheries management.

Résumé: Coral reefs provide ecosystem goods and services for millions of people in the tropics, but reef conditions are declining worldwide. Effective solutions to the crisis facing coral reefs depend in part on understanding the context under which different types of conservation benefits can be maximized. Our global analysis of nearly 1,800 tropical reefs reveals how the intensity of human impacts in the surrounding seascape, measured as a function of human population size and accessibility to reefs (“gravity”), diminishes the effectiveness of marine reserves at sustaining reef fish biomass and the presence of top predators, even where compliance with reserve rules is high. Critically, fish biomass in high-compliance marine reserves located where human impacts were intensive tended to be less than a quarter that of reserves where human impacts were low. Similarly, the probability of encountering top predators on reefs with high human impacts was close to zero, even in high-compliance marine reserves. However, we find that the relative difference between openly fished sites and reserves (what we refer to as conservation gains) are highest for fish biomass (excluding predators) where human impacts are moderate and for top predators where human impacts are low. Our results illustrate critical ecological trade-offs in meeting key conservation objectives: reserves placed where there are moderate-to-high human impacts can provide substantial conservation gains for fish biomass, yet they are unlikely to support key ecosystem functions like higher-order predation, which is more prevalent in reserve locations with low human impacts.

Résumé: 1. Periodically harvested closures (PHCs) are one of the most common forms of fisheries management in Melanesia, demonstrating multiple objectives, including sustaining fish stocks and increasing catch efficiency to support small-scale fisheries. No studies have comprehensively assessed their ability to provide short-term fisheries benefits across the entire harvest regime. 2. We present a novel analytical framework to guide a meta-analysis and assist future research in conceptualizing and assessing the potential of PHCs to deliver benefits for multiple fisheries-related objectives. 3. Ten PHCs met our selection criteria and on average, they provided a 48% greater abundance and 92% greater biomass of targeted fishes compared with areas open to fishing prior to being harvested. 4. This translated into tangible harvest benefits, with fishers removing 21% of the abundance and 49% of the biomass within PHCs, resulting in few post-harvest protection benefits. 5. When PHCs are larger, closed for longer periods or well enforced, short-term fisheries benefits are improved. However, an increased availability of fish within PHCs leads to greater removal during harvests. 6. Synthesis and applications. Periodically harvested closures (PHCs) can provide short-term fisheries benefits. Use of the analytical framework presented here will assist in determining long-term fisheries and conservation benefits. We recommend PHCs be closed to fishing for as long as possible, be as large as possible, that compliance be encouraged via community engagement and enforcement, and strict deadlines/goals for harvesting set to prevent overfishing.

Résumé: Life cycle assessment (LCA) is the normed and international framework for assessing the environmental impacts of most human activities. LCA is commonly used to assess various aspects of fisheries but is only at the onset for estimating impacts of fish removal. This study proposes original characterization factors (CFs) to quantify impacts on biotic resources using the mass of fish caught. This mid-point assessment occurs in impact pathways leading to natural resources, one of the three areas of protection in LCA, and thus fisheries can be compared according to the depleted stock fraction. CFs are defined by the marginal approach applied to the Schaefer model, representing the dynamics of the stocks. They combine catches, current biomass and maximum intrinsic growth rates, determined from the application of the CMSY algorithm (Froese etal. (2017), Fish Fish, 18, 506) with FAO and FishBase data. A multistock CF is also proposed and used for multispecies-stocks. CFs for the 4,993 stocks defined from global FAO areas are obtained and sorted according to the robustness of the model hypotheses. CF values among stocks generally tend to decrease when fish catches increase because high catches are generally associated with abundant stocks. Multispecies-stocks CFs for the northeast Atlantic Ocean are compared to ICES-based CFs and are reliable for the main fished stocks. With this simple and generic structure, this operational fish resource depletion potential could be extended to other biotic resources.

Résumé: Climate variability plays a central role in the dynamics of marine pelagic ecosystems shaping the structure and abundance changes of plankton communities, thereby affecting energy pathways and biogeochemical fluxes in the ocean. Here we have investigated complex interactions driven a climate-hydrology-plankton system in the southern East China Sea over the period 2000 to 2012. In particular, we aimed at quantifying the influence of climate phenomena playing out in tropical (El Nino 3.4) and middle-high latitudes (East Asia Winter Monsoon, EAWM, and Pacific Decadal Oscillation, PDO) on pelagic copepods. We found that the EAWM and El Nino 3.4 showed a non-stationary and non-linear relationship with local temperature variability. In the two cases, the strength of the relationship, as indexed by the wavelet coherence analysis, decreased along with the positive phase of the PDO. Likewise, the influence of EAWM and El Nino 3.4 on copepods exhibited a non-stationary link that changed along with the PDO state. Indeed, copepods and EAWM were closely related during the positive phase, while the link copepods-El Nino 3.4 was stronger during the negative phase. Our results pointed out cascading effects from climate to plankton driven by the positive phase of the PDO through its effect on temperature conditions, and likely through a larger southward transport of nutrient-rich water masses to northern Taiwan and the Taiwan Strait. We suggest a chain of mechanisms whereby the PDO shapes interannual dynamics of pelagic copepods and highlight that these results have implications for integrative management measures, as pelagic copepods plays a prominent role in food web dynamics and for harvested fish in the East China Sea.

Résumé: We compiled and analysed logbook data from the French trawl albacore fishery covering the period 1991-2015. The dataset comprised catch and effort data for the French fleet operating in the Bay of Biscay and Celtic Sea, as well as spatiotemporal and gear characteristics. Generalized linear modelling was used to model spatial, seasonal, environmental, and gear covariates of fleet CPUE rates. A long-term index of relative abundance is provided that can be integrated into the stock assessment of North Atlantic albacore. The analysis revealed higher albacore CPUE associated with relatively low sea surface temperature and distinct seasonal effects. The derived abundance trend for the French trawl fishery agreed with the estimated time series of stock abundance from recent assessments.

Résumé: Increasing the size and number of marine protected areas (MPAs) is widely seen as a way to meet ambitious biodiversity and sustainable development goals. Yet, debate still exists on the effectiveness of MPAs in achieving ecological and societal objectives. Although the literature provides significant evidence of the ecological effects of MPAs within their boundaries, much remains to be learned about the ecological and social effects of MPAs on regional and seascape scales. Key to improving the effectiveness of MPAs, and ensuring that they achieve desired outcomes, will be better monitoring that includes ecological and social data collected inside and outside of MPAs. This can lead to more conclusive evidence about what is working, what is not, and why. Eight authors were asked to write about their experiences with MPA effectiveness. The authors were instructed to clearly define “effectiveness” and discuss the degree to which they felt MPAs had achieved or failed to be effective. Essays were exchanged among authors and each was invited to write a shorter “counterpoint.” The exercise shows that, while experiences are diverse, many authors found common ground regarding the role of MPAs in achieving conservation targets. This exchange of perspectives is intended to promote reflection, analysis, and dialogue as a means for improving MPA design, assessment, and integration with other conservation tools.

Résumé: Depredation in marine ecosystems is defined as the damage or removal of fish or bait from fishing gear by predators. Depredation raises concerns about the conservation of species involved, fisheries yield and profitability, and reference points based on stock assessment of depredated species. Therefore, the development of accurate indicators to assess the impact of depredation is needed. Both the Reunion Island and the Seychelles archipelago pelagic longline fisheries targeting swordfish (Xiphias gladius) and tuna (Thunnus spp.) are affected by depredation from toothed whales and pelagic sharks. In this study, we used fishery data collected between 2004 and 2015 to propose depredation indicators and to assess depredation levels in both fisheries. For both fisheries, the interaction rate (depredation occurrence) was significantly higher for shark compared to toothed whale depredation. However, when depredation occurred, toothed whale depredation impact was significantly higher than shark depredation impact, with higher depredation per unit effort (number of fish depredated per 1000 hooks) and damage rate (proportion of fish depredated per depredated set). The gross depredation rate in the Seychelles was 18.3%. A slight increase of the gross depredation rate was observed for the Reunion Island longline fleet from 2011 (4.1% in 2007–2010 and 4.4% in 2011–2015). Economic losses due to depredation were estimated by using these indicators and published official statistics. A loss of 0.09 EUR/hook due to depredation was estimated for the Reunion Island longline fleet, and 0.86 EUR/hook for the Seychelles. These results suggest a southward decreasing toothed whale and shark depredation gradient in the southwest Indian Ocean. Seychelles depredation levels are among the highest observed in the world revealing this area as a “hotspot” of interaction between pelagic longline fisheries and toothed whales. This study also highlights the need for a set of depredation indicators to allow for a global comparison of depredation rates among various fishing grounds worldwide.

Résumé: Ecological indicators are widely used to characterise ecosystem health. In the marine environment, indicators have been developed to assess the ecosystem effects of fishing to support an ecosystem approach to fisheries. However, very little work on the performance and robustness of ecological indicators has been carried out. An important aspect of robustness is that indicators should respond specifically to changes in the pressures they are designed to detect (e.g. fishing) rather than changes in other drivers (e.g. environment). We adopted a multi-model approach to compare and test the specificity of commonly used ecological indicators to capture fishing effects in the presence of environmental change and under different fishing strategies. We tested specificity in the presence of two types of environmental change: “random”, representing interannual climate variability and “directional”, representing climate change. We used phytoplankton biomass as a proxy of the environmental conditions, as this driver was comparable across all ecosystem models, then applied a signal-to-noise ratio analysis to test the specificity of indicators with random environmental change. For directional change, we used mean gradients to apportion the quantity of change in the indicators due to fishing and the environment. We found that depending on the fishing strategy and environmental change, ecological indicators could range from high to low specificity to fishing. As expected, the specificity of indicators to fishing almost always decreased as environmental variability increased. In 55–76% of the scenarios run with directional change in phytoplankton biomass across fishing strategies and ecosystem models, indicators were significantly more responsive to changes in fishing than to changes in phytoplankton biomass. This important result makes the tested ecological indicators good candidates to support fisheries management in a changing environment. Among the indicators, the catch over biomass ratio was most often the most specific indicator to fishing, whereas mean length was most often the most sensitive to change in phytoplankton biomass. However, the responses of indicators were highly variable depending on the ecosystem and fishing strategy under consideration. We therefore recommend that indicators should be tested in the particular ecosystem before they are used for monitoring and management purposes.

Résumé: Marine protected areas (MPAs) are key tools to mitigate human impacts in coastal environments, promoting sustainable activities to conserve biodiversity. The designation of MPAs alone may not result in the lessening of some human threats, which is highly dependent on management goals and the related specific regulations that are adopted. Here, we develop and operationalize a local threat assessment framework. We develop indices to quantify the effectiveness of MPAs (or individual zones within MPAs in the case of multiple-use MPAs) in reducing anthropogenic extractive and non-extractive threats operating at local scale, focusing specifically on threats that can be managed through MPAs. We apply this framework in 15 Mediterranean MPAs to assess their threat reduction capacity. We show that fully protected areas effectively eliminate extractive activities, whereas the intensity of artisanal and recreational fishing within partially protected areas, paradoxically, is higher than that found outside MPAs, questioning their ability at reaching conservation targets. In addition, both fully and partially protected areas attract non-extractive activities that are potential threats. Overall, only three of the 15 MPAs had lower intensities for the entire set of eight threats considered, in respect to adjacent control unprotected areas. Understanding the intensity and occurrence of human threats operating at the local scale inside and around MPAs is important for assessing MPAs effectiveness in achieving the goals they have been designed for, informing management strategies, and prioritizing specific actions.

Résumé: Small pelagics are the main fish resource in North West Africa. In Senegal, these are mainly sardinellas (Sardinella aurita and S. maderensis) and bonga shad (Ethmalosa fimbriata). The fisheries, mainly encircling gillnets and purse seines, are predominantly performed by artisanal fishers and are of great importance for the Senegalese economy and for food security in the region. However, in recent years, the main conditions for these fisheries have changed and recent observations have shown strong declines in profit. An analysis over the last twenty years (1993-2013) show that the fisheries lost profit between 65% and 100% while operating costs increased by 25% and 90%, for encircling gillnet and purse seine, respectively. While the fuel price dominates as determining factor during the survey period, important other drivers during the last five years were a decrease in fish biomass and an increase in fishing effort.

Résumé: The mineral composition of target and non-target pelagic fish caught by purse-seiners and longliners in the western-central Indian Ocean was determined. From the 10 essential elements analysed, selenium and zinc showed the highest concentrations in swordfish and blue marlin while Indian mackerel appeared as a good source of copper, iron and chrome. All catch had levels of lead and cadmium, two toxic elements, below the maximum sanitary limits. Although some concerns were raised regarding mercury concentrations in the largest species (wahoo, swordfish and blue marlin), molar ratios of mercury and selenium indicate that all oceanic pelagic fish from the western-central Indian Ocean are safe for human consumption. This study also gives insights on the relationships between the levels of essential and toxic elements in fish muscle and the size, trophic position and diet sources of the studied pelagic species. (C) 2017 Elsevier Ltd. All rights reserved.

Résumé: Fisheries have had major negative impacts on marine ecosystems, and effective fisheries management and governance are needed to achieve sustainable fisheries, biodiversity conservation goals and thus good ecosystem status. To date, the IndiSeas programme (Indicators for the Seas) has focussed on assessing the ecological impacts of fishing at the ecosystem scale using ecological indicators. Here, we explore fisheries ‘Management Effectiveness’ and ‘Governance Quality’ and relate this to ecosystem health and status. We developed a dedicated expert survey, focused at the ecosystem level, with a series of questions addressing aspects of management and governance, from an ecosystem-based perspective, using objective and evidence-based criteria. The survey was completed by ecosystem experts (managers and scientists) and results analysed using ranking and multivariate methods. Results were further examined for selected ecosystems, using expert knowledge, to explore the overall findings in greater depth. Higher scores for ‘Management Effectiveness’ and ‘Governance Quality’ were significantly and positively related to ecosystems with better ecological status. Key factors that point to success in delivering fisheries and conservation objectives were as follows: the use of reference points for management, frequent review of stock assessments, whether Illegal, Unreported and Unregulated (IUU) catches were being accounted for and addressed, and the inclusion of stakeholders. Additionally, we found that the implementation of a long-term management plan, including economic and social dimensions of fisheries in exploited ecosystems, was a key factor in successful, sustainable fisheries management. Our results support the thesis that good ecosystem-based management and governance, sustainable fisheries and healthy ecosystems go together.

Résumé: With the ongoing loss of coral cover and the associated flattening of reef architecture, understanding the links between coral habitat and reef fishes is of critical importance. Here, we investigate whether considering coral traits and functional diversity provides new insights into the relationship between structural complexity and reef fish communities, and whether coral traits and community composition can predict structural complexity. Across 157 sites in Seychelles, Maldives, the Chagos Archipelago, and Australia's Great Barrier Reef, we find that structural complexity and reef zone are the strongest and most consistent predictors of reef fish abundance, biomass, species richness, and trophic structure. However, coral traits, diversity, and life histories provided additional predictive power for models of reef fish assemblages, and were key drivers of structural complexity. Our findings highlight that reef complexity relies on living corals-with different traits and life histories-continuing to build carbonate skeletons, and that these nuanced relationships between coral assemblages and habitat complexity can affect the structure of reef fish assemblages. Seascape-level estimates of structural complexity are rapid and cost effective with important implications for the structure and function of fish assemblages, and should be incorporated into monitoring programs.

Résumé: Fishmeal and fish oil are largely used as input to several animal feed industries all around the world, but there is a lack of life cycle assessments (LCAs) on Peruvian fishmeal plants, despite their predominance in the global supply. LCAs where performed on three different types of Peruvian fishmeal plants with the objective of comparing them and suggesting ways of limiting their impacts. The LCA results can be nested into LCAs of animal feed. Two system boundaries were used: one including the fishery and another excluding it in order to enable other practitioners to use our generic life cycle inventory (LCI) data and LCI analysis. The effects of different processing rates and qualities of fishmeal on environmental impacts were compared. We used the SimaPro software, the ecoinvent 2.2 database and the ReCiPe method. In contrast to many LCA studies, the construction and maintenance phases were considered. Despite the predominant impact of the use phase, in particular consumption of fossil energy, these two phases contribute significantly (>10% using the ReCiPe single score) when fishing is excluded from the system boundaries. Furthermore, existing screening LCAs of the use phase largely underestimate (∼20%) its environmental impacts. The environmental benefit of using natural gas instead of heavy fuel as energy source, in terms of reduced impacts, is huge, reaching 41% of the ReCiPe single score when fishing is excluded and 30% when included. The comparison of environmental impacts between different qualities of fishmeal shows higher impacts of residual fishmeal, intermediate impact of standard fishmeal and lower impacts of Prime fishmeal, the difference between extreme values being more than twofold. Future studies on other fishmeal and residual fishmeal plants should take into account the construction and maintenance phases, and more items in the use phase than in historical screenings. There is room to decrease the environmental impact of this industry in Peru.

Résumé: Ecological indicators are increasingly used to examine the evolution of natural ecosystems and the impacts of human activities. Assessing their trends to develop comparative analyses is essential. We introduce the analysis of convergence, a novel approach to evaluate the dynamic and trends of ecological indicators and predict their behavior in the long-term. Specifically, we use a non-parametric estimation of Gaussian kernel density functions and transition probability matrix integrated in the R software. We validate the performance of our methodology through a practical application to three different ecological indicators to study whether Mediterranean countries converge towards similar fisheries practices. We focus on how distributions evolve over time for the Marine Trophic Index, the Fishing in Balance Index and the Expansion Factor during 1950-2010. Results show that Mediterranean countries persist in their fishery behaviors throughout the time series, although a tendency towards similar negative effects on the ecosystem is apparent in the long-term. This methodology can be easily reproduced with different indicators and/or ecosystems in order to analyze ecosystem dynamics. (C) 2017 Elsevier Ltd. All rights reserved.

Résumé: Moored fish aggregating devices (MFADs) are increasingly being used in small-scale tropical fisheries to access pelagic fish species that are otherwise difficult to harvest in large numbers. Little attention has yet been paid to monitoring MFADs in coastal areas, however. This is most likely due to the small-scale nature of most fisheries that utilize them and the presumed lower impact of those fisheries on fish stocks and their ecosystems. In this paper, we examined the abundance and density of MFADs around Guadeloupe, using aerial line transect surveys. Estimated MFAD densities were found to be high compared with previously reported densities in this area, especially within the 22-45 km range offshore. We examine and discuss possible reasons for these high densities. The main drivers appear to be the target species dolphinfish (Coryphaena hippurus) and yellowfin tuna (Thunnus albacares) and related fishing behaviour. We present different approaches for reducing and monitoring MFADs densities, including the co-management of MFAD territorial use rights by fishing communities. (C) 2016 Elsevier B.V. All rights reserved.

Résumé: The Mediterranean Sea is characterized by large scale gradients of temperature, productivity and salinity, in addition to pronounced mesoscale differences. Such a heterogeneous system is expected to shape the population dynamics of marine species. On the other hand, prevailing environmental and climatic conditions at whole basin scale may force spatially distant populations to fluctuate in synchrony. Cephalopods are excellent case studies to test these hypotheses owing to their high sensitivity to environmental conditions. Data of two cephalopod species with contrasting life histories (benthic octopus vs nectobenthic squid), obtained from scientific surveys carried out throughout the Mediterranean during the last 20 years were analyzed. The objectives of this study and the methods used to achieve them (in parentheses) were: (i) to investigate synchronies in spatially separated populations (decorrelation analysis); (ii) detect underlying common abundance trends over distant regions (dynamic factor analysis, DFA); and (iii) analyse putative influences of key environmental drivers such as productivity and sea surface temperature on the population dynamics at regional scale (general linear models, GLM). In accordance with their contrasting spatial mobility, the distance from where synchrony could no longer be detected (decorrelation scale) was higher in squid than in octopus (349 vs 217 km); for comparison, the maximum distance between locations was 2620 km. The DFA revealed a general increasing trend in the abundance of both species in most areas, which agrees with the already reported worldwide proliferation of cephalopods. DFA results also showed that population dynamics are more similar in the eastern than in the western Mediterranean basin. According to the GLM models, cephalopod populations were negatively affected by productivity, which would be explained by an increase of competition and predation by fishes. While warmer years coincided with declining octopus numbers, areas of high sea surface temperature showed higher densities of squid. Our results are relevant for regional fisheries management and demonstrate that the regionalisation objectives envisaged under the new Common Fishery Policy may not be adequate for Mediterranean cephalopod stocks. (C) 2017 Elsevier Ltd. All rights reserved.

Résumé: Biodiversity in estuarine ecosystems suffers from the impact of environmental changes and human activities. This mainly involves changes in temperature, salinity, pollution, habitat degradation or loss and fishing activities. The diversity of species communities is traditionally assessed on the basis of their species richness and composition. However, there is growing interest in taking into account complementary components dealing with species differences (e.g. taxonomic relatedness). In spite of their social, ecological and economic importance, the diversity of tropical estuarine fish assemblages has rarely been monitored by means of a multi-component approach under different human pressure and environmental conditions. We analysed the diversity of exploited fish communities (both target and non-target species) sampled during scientific surveys within four estuarine complexes in the state of Pernambuco, Brazil: Itapissuma, Suape, Sirinhaém, and Rio Formoso. A total of 122 species were collected within 34 samples. Overall, diversity indices and species models fitting dominance-evenness profiles mainly revealed differences between assemblages from Itapissuma, being the largest estuary with wide areas of mangrove, and the other estuaries. While assemblages from Itapissuma generally encompassed more species and individuals than the other estuaries, species were more closely related from a taxonomic point of view. In addition, a Double Principal Coordinate Analysis (DPCoA) established a typology of assemblages, useful for management purposes, and linked to particular fish families: it highlighted differences between Itapissuma, Suape, Sirinhaém and Rio Formoso. This method combines matrices of species abundances and differences (here taxonomic distances according to the Linnean classification). It was particularly accurate with a first factorial plane explaining 73% of the total inertia, while only 17% was achieved by a traditional Principal Component Analysis (PCA). Overall, this study provides an assessment of the state of fish assemblage diversity in Pernambuco estuaries where contrasted human and environmental conditions occur. It underscores the accuracy of using a multi-component diversity approach, with a multivariate analysis that is not yet widely used, for monitoring the diversity of estuaries for ecosystem-based fisheries management purposes.

Résumé: Ecological indicators are increasingly used to examine the evolution of natural ecosystems and the impacts of human activities. Assessing their trends to develop comparative analyses is essential. We introduce the analysis of convergence, a novel approach to evaluate the dynamic and trends of ecological indicators and predict their behavior in the long-term. Specifically, we use a non-parametric estimation of Gaussian kernel density functions and transition probability matrix integrated in the R software. We validate the performance of our methodology through a practical application to three different ecological indicators to study whether Mediterranean countries converge towards similar fisheries practices. We focus on how distributions evolve over time for the Marine Trophic Index, the Fishing in Balance Index and the Expansion Factor during 1950–2010. Results show that Mediterranean countries persist in their fishery behaviors throughout the time series, although a tendency towards similar negative effects on the ecosystem is apparent in the long-term. This methodology can be easily reproduced with different indicators and/or ecosystems in order to analyze ecosystem dynamics.

Résumé: Worldwide, in recent years capture fisheries targeting lower-trophic level forage fish and euphausiid crustaceans have been substantial (∼20 million metric tons [MT] annually). Landings of forage species are projected to increase in the future, and this harvest may affect marine ecosystems and predator-prey interactions by removal or redistribution of biomass central to pelagic food webs. In particular, fisheries targeting forage fish and euphausiids may be in competition with seabirds, likely the most sensitive of marine vertebrates given limitations in their foraging abilities (ambit and gape size) and high metabolic rate, for food resources. Lately, apparent competition between fisheries and seabirds has led to numerous high-profile conflicts over interpretations, as well as the approaches that could and should be used to assess the magnitude and consequences of fisheries-seabird resource competition. In this paper, we review the methods used to date to study fisheries competition with seabirds, and present “best practices” for future resource competition assessments. Documenting current fisheries competition with seabirds generally involves addressing two major issues: 1) are fisheries causing localized prey depletion that is sufficient to affect the birds? (i.e., are fisheries limiting food resources?), and 2) how are fisheries-induced changes to forage stocks affecting seabird populations given the associated functional or numerical response relationships? Previous studies have been hampered by mismatches in the scale of fisheries, fish, and seabird data, and a lack of causal understanding due to confounding by climatic and other ecosystem factors (e.g., removal of predatory fish). Best practices for fisheries-seabird competition research should include i) clear articulation of hypotheses, ii) data collection (or summation) of fisheries, fish, and seabirds on matched spatio-temporal scales, and iii) integration of observational and experimental (including numerical simulation) approaches to establish connections and causality between fisheries and seabirds. As no single technique can provide all the answers to this vexing issue, an integrated approach is most promising to obtain robust scientific results and in turn the sustainability of forage fish fisheries from an ecosystem perspective.

Résumé: Recently, the abundance of young Atlantic bluefin tuna (Thunnus thynnus) tripled in the northwestern Mediterranean following effective management measures. We investigated whether its predation on sardine (Sardina pilchardus) and anchovy (Engraulis encrasicolus) could explain their concurrent size and biomass decline, which caused a fishery crisis. Combining the observed diet composition of bluefin tuna, their modelled daily energy requirements, their population size, and the abundance of prey species in the area, we calculated the proportion of the prey populations that were consumed by bluefin tuna annually over 2011-2013. To assess whether tuna could alter the size structure of the three small pelagic fish populations (anchovy, sardine, and sprat (Sprattus sprattus)), the size distributions of the consumed prey species were compared with those of the wild populations. We estimated that the annual consumption of small pelagic fish by bluefin tuna is less than 2% of the abundance of these populations. Furthermore, size selectivity patterns were not observed. We thus concluded that tuna predation is unlikely to be the main cause of major changes in the small pelagic fish populations from this area.

Résumé: 1. Knowledge of fish migration is a prerequisite to sustainable fisheries management and preservation, especially in large international river basins. In particular, understanding whether a migratory lifestyle is compulsory or facultative, and whether adults home to their natal geographic area is paramount to fully appraise disruptions of longitudinal connectivity resulting from damming. 2. In the Amazon, the large migratory catfishes of the Brachyplatystoma genus are apex predators of considerable interest for fisheries. They are believed to use the entire length of the basin to perform their life cycle, with hypothesized homing behaviours. Here, we tested these hypotheses, using the emblematic B. rousseauxii as a model species. 3. We sampled adults close to major breeding areas in the Amazon basin (upper Madeira and upper Amazonas) and assessed their lifetime movements by measuring variations in Sr-87/Sr-86 along transverse sections of their otoliths (ear stones) using laser ablation multicollector mass spectrometry (LA-MC-ICPMS). 4. We demonstrate that larvae migrate downstream from the Andean piedmont to the lower Amazon, where they grow over a protracted period before migrating upstream as adults. Contrary to prevailing inferences, not all fish spend their nursery stages in the Amazon estuary,. By contrast, the passage in the lower or central Amazon seems an obligate part of the life cycle. We further evidence that most adults home to their natal geographic area within the Madeira sub-basin. Such long-distance natal homing is exceptional in purely freshwater fishes. 5. Synthesis and applications. By using otolith microchemistry, we were able to demonstrate a seemingly compulsory basin-wide migratory life cycle of large Amazonian catfishes. This makes them the organisms performing the longest migrations ( >8000 km) in fresh waters. This exceptional life history is already jeopardized by two dams recently built in the Madeira River, which block a major migration route and access to a substantial part of their spawning grounds. Major impacts can be anticipated from the current and forthcoming hydroelectric development in the Amazon basin, not only on the populations and fisheries of this apex predator, but also on Amazonian food webs through trophic cascades.

Résumé: Stock-based and ecosystem-based indicators are used to provide a new diagnosis of the fishing impact and environmental status of European seas. In the seven European marine ecosystems covering the Baltic and the North-east Atlantic, (i) trends in landings since 1950 were examined; (ii) syntheses of the status and trends in fish stocks were consolidated at the ecosystem level; and (iii) trends in ecosystem indicators based on landings and surveys were analysed. We show that yields began to decrease everywhere (except in the Baltic) from the mid-1970s, as a result of the over-exploitation of some major stocks. Fishermen adapted by increasing fishing effort and exploiting a wider part of the ecosystems. This was insufficient to compensate for the decrease in abundance of many stocks, and total landings have halved over the last 30 years. The highest fishing impact took place in the late 1990s, with a clear decrease in stock-based and ecosystem indicators. In particular, trophic-based indicators exhibited a continuous decreasing trend in almost all ecosystems. Over the past decade, a decrease in fishing pressure has been observed, the mean fishing mortality rate of assessed stocks being almost halved in all the considered ecosystems, but no clear recovery in the biomass and ecosystem indicators is yet apparent. In addition, the mean recruitment index was shown to decrease by around 50% in all ecosystems (except the Baltic). We conclude that building this kind of diagnosis is a key step on the path to implementing an ecosystem approach to fisheries management

Résumé: The three countries of the Benguela Current Large Marine Ecosystem (BCLME), namely Angola, Namibia and South Africa, have committed to implementing ecosystem-based management (EBM) including an ecosystem approach to fisheries (EAF) in the region, to put in practice the principles of sustainable development in ocean-related matters. There is also recognition of the need for marine spatial planning (MSP) as a process for informing EBM with regard to the allocation and siting of ocean uses so that ecosystem health is ensured and trade-offs between ecosystem services are appropriately dealt with. Marine spatial planning is both an integrated and an area-based process, and this paper produces a spatial characterisation of the BCLME for achieving a common basis for MSP in the region, focusing on the oceanography, biology and fisheries. Recognising spatial variation in physical driving forces, primary and secondary production, trophic structures and species richness, four different subsystems are characterised: (1) north of the Angola-Benguela Front, (2) from the Angola-Benguela Front to Luderitz, (3) from Luderitz to Cape Agulhas, and (4) from Cape Agulhas to Port Alfred on the south-east coast of South Africa. Research and monitoring requirements of relevance for MSP and EBM in the region are identified, focusing on understanding variability and change, including with regard to the boundary areas identified for the system. To this end, 14 cross-shelf monitoring transects are proposed (including seven that are already being monitored) to estimate fluxes of biota, energy and materials within and between the subsystems. The usefulness of models for understanding ecosystem variability and changes is recognised and the need for fine-scale resolution of both sampling and modelling for adequate MSP as input to EBM for the often-conflicting interests of conserving biodiversity, and managing fisheries, recreation, offshore oil and gas exploration and exploitation, offshore mining and shipping routes, is emphasised.

Résumé: The identification and mitigation of adverse effects of the bycatch of tuna longline fishery have been mainly developed and implemented for seabirds, sharks and turtles and, the knowledge on teleost bycatch for this fishery, remains very poor. This paper contributes to a comprehensive assessment of life history traits and fishery attributes of target and bycatch species caught by the tuna longline fishery in the South Atlantic and Indian Oceans. Data was compiled on seven life history traits and three fishery attributes for 33 and 27 teleost stocks caught by longliners in South Atlantic and Indian Oceans, respectively. In addition, each species was assigned into four categories describing the fate of the catch: target species for commercial use, bycatch species kept for consumption, bycatch species kept for commercial use and discarded bycatch. Life history traits and fishery attributes did not differ between oceans. However, non-target but commercialized species were smaller in the Atlantic Ocean. Teleosts caught by the tuna longline fishery was segregated into three main groups: (1) the fast growing species represented mainly by dolphinfishes (Coryphaena hippurus and C. equisellis), skipjack tuna (Katsuwonus pelamis), kawakawa (Euthynnus affinis), bullet tuna (Auxis rochei), snoek (Thyrsites atun) and blackfin tuna (Thunnus atlanticus); (2) target tunas and most other bycatch species which were part of an intermediate group and (3) billfishes including swordfish representing the large and slow growing species with moderate to high market values and unknown or highly uncertain stock status. Investment in some key life history traits (such as growth coefficient) and the development of quantitative or semi-quantitative approaches (stock assessment and Ecological Risk Assessment) should be priorized as precautionary management measures for these species.

Résumé: Fish aggregating devices (FADs) are floating objects used by fishers to aggregate pelagic fish such as tunas, and enhance the catch of these species. Because this is so important for tuna fisheries, nearly 100,000 FADs are deployed by fishers every year in the world's tropical oceans. Fishers use geo-locating buoys to track and maintain these FADs by visiting them regularly, reinforcing them if they are weak or replacing them. Many of these buoys are now equipped with echo-sounders in order to provide remote information on the aggregated biomass. FADs are currently only used for fishing purposes but they can also serve scientific objectives. In this paper, we investigate the potential of these data for improving our knowledge on the ecology of tunas and other pelagic animals as well as to obtain fishery-independent indices of distribution and abundance. These FADs also represent platforms for scientists to deploy scientific instruments, such as electronic tag receivers, cameras and hydrophones. Because FADs naturally aggregate several pelagic species other than tuna, these instrumented FADs can be a unique opportunity to observe pelagic ecosystem dynamics that are not possible from conventional research vessels. The amount of cost-effective data that they can provide would make a significant contribution to the scientific understanding of pelagic ecosystems. This information is vital for improved conservation and management of pelagic fisheries. (C) 2015 Elsevier B.V. All rights reserved.

Résumé: The demersal trawl fishery of the north Tunisian coast primarily targets the deep-water rose shrimp, Parapenaeus longirostris, and secondarily a variety of demersal fish species. These fishes include hake (Merluccius merluccius), common pandora (Pagellus erythrinus), red mullet (Mullus barbatus), surmullet (Mullus surmuletus), Atlantic horse mackerel (Trachurus trachurus), bogue (Boops boops), picarel (Spicara smaris) and spotted flounder (Citharus linguatula). A bioeconomic model was used to test management measures through scenarios that ran over eleven years to estimate the viability of the fishery according to biological and economic results. The most beneficial scenario was the combination of several management measures including a temporal closure of two months, the replacement of the 40 mm diamond mesh codend with 40 mm square mesh, the removal of both the biological recovery tax and of fuel subsidies, and an 83% reduction in fishing capacity. This results in an annual private profit higher by 9.3 M TND (Tunisian Dinar) (6.9 M USD) that of 2008, and an economic rent that was higher by 13.3 M TND (9.9 M USD) than by the end of the projected period. Shrimp and fish biomasses have doubled compared with 2008, and trawling damages would be reduced to the equivalent of a five- fold reduction in fishing effort. This study shows that the objectives of improving demersal ecosystems and improving individual and collective wealth can be achieved through the synergistic effects of various regulatory measures.

Résumé: We developed an ecological model to characterize the structure and functioning of the marine continental shelf and slope area of the northwestern Mediterranean Sea, from Toulon to Cape La Nao (NWM model), in the early 2000s. The model included previously modeled areas in the NW Mediterranean (the Gulf of Lions and the Southern Catalan Sea) and expanded their ranges, covering 45,547 km2, with depths from 0 to 1000 m. The study area was chosen to specifically account for the connectivity between the areas and shared fish stocks and fleets. Input data were based on local scientific surveys and fishing statistics, published data on stomach content analyses, and the application of empirical equations to estimate consumption and production rates. The model was composed of 54 functional groups, from primary producers to top predators, and Spanish and French fishing fleets were considered. Results were analyzed using ecological indicators and compared with outputs from ecosystem models developed in the Mediterranean Sea and the Gulf of Cadiz prior to this study. Results showed that the main trophic flows were associated with detritus, phytoplankton, zooplankton and benthic invertebrates. Several high trophic level organisms (such as dolphins, benthopelagic cephalopods, large demersal fishes from the continental shelf, and other large pelagic fishes), and the herbivorous salema fish, were identified as keystone groups within the ecosystem. Results confirmed that fishing impact was high and widespread throughout the food web. The comparative approach highlighted that, despite productivity differences, the ecosystems shared common features in structure and functioning traits such as the important role of detritus, the dominance of the pelagic fraction in terms of flows and the importance of benthic–pelagic coupling.

Résumé: Invertebrate catches are increasing globally following the depletion of many finfish stocks, yet stock assessments and management plans for invertebrates are limited, as is an understanding of the ecosystem effects of these fisheries. Using an ecosystem modelling approach, we explored the trade-offs between invertebrate catches and their impacts on the associated ecosystem on the south coast of Wellington, New Zealand. We simulated exploitation of lobster (Jasus edwardsii), abalone (Haliotis australis, H. iris), and sea urchin (Evechinus chloroticus) over a range of depletion levels—from no depletion to local extinction—to estimate changes in target catches and associated effects on other species groups, trophic levels, and benthic and pelagic components. Exploitation of lobster showed the strongest ecosystem effects, followed by abalone and urchin. In all three fisheries, the current exploitation rate exceeds that which produces maximum sustainable yield, with considerable ecosystem effects. Interestingly, a reduced exploitation rate is predicted to increase target catches (and catch-per-unit-effort), thereby strongly reducing ecosystem effects, a win–win situation. Our results suggest that invertebrate exploitation clearly influences ecosystem structure and function, yet the direction and magnitude of responses depend on the target group and exploitation rate. An ecosystem-based fisheries management approach that includes the role of invertebrates would improve the conservation and management of invertebrate resources and marine ecosystems on broader scales.

Résumé: Diversity in the by-catch communities from the pelagic ecosystem in the tropical tuna purse seine fishery has been poorly studied. This study uses different biodiversity measures to compare drifting fish aggregating devices (FADs) and Free School sets (sets made on schools of tuna) of the Western Indian Ocean. Data was collected from observer programs carried out by the European Union between 2003 and 2010 on board Spanish and French fleets. Alpha (species diversity of a particular area) and Beta diversity (difference in species composition between different areas) was analyzed to assess differences in the number of species, abundances and the species composition between areas and fishing modes. Generalized additive models were undertaken to explore which geographical/environmental variables explain the distribution of species richness index and Shannon diversity index in both fishing modes. Results showed that by-catch species in FAD communities may be used as observatories of surface pelagic biodiversity in combination with Free School communities. FAD communities were more diverse with higher number of species (74 species) and evenly distributed than Free School communities (56 species). However, environmental variables played a more important role in Free School communities. Somalia area and Mozambique Channel were the areas with highest biodiversity rates in both fishing modes. This work contributed for the future implementation of the EAFM to manage the pelagic ecosystem in a holistic and more integrated way.

Résumé: Open oceans are one of the least protected, least studied and most inadequately managed ecosystems on Earth. Three themes were investigated that differentiate the open ocean (areas beyond national jurisdiction and deep area within exclusive economic zones) from other realms and must be considered when developing planning and management options: ecosystem interactions, especially between benthic and pelagic systems; potential effects of human activities in open oceans on ecological linkages; and policy context and options. A number of key ecological factors differentiate open oceans from coastal systems for planners and managers: (1) many species are widely distributed and, especially for those at higher trophic levels, wide ranging; (2) the sizes and boundaries of biogeographical domains (patterns of co-occurrence of species, habitats and ecosystem processes) vary significantly by depth; (3) habitat types exhibit a wide range of stabilities, from ephemeral (e.g., surface frontal systems) to hyper-stable (e.g., deep sea); and (4) vertical and horizontal linkages are prevalent. Together, these ecological attributes point to interconnectedness between open ocean habitats across large spatial scales. Indeed, human activities – especially fishing, shipping, and potentially deep-sea mining and oil and gas extraction – have effects far beyond the parts of the ocean in which they operate. While managing open oceans in an integrated fashion will be challenging, the ecological characteristics of the system demand it. A promising avenue forward is to integrate aspects of marine spatial planning (MSP), systematic conservation planning (SCP), and adaptive management. These three approaches to planning and management need to be integrated to meet the unique needs of open ocean systems, with MSP providing the means to meet a diversity of stakeholder needs, SCP providing the structured process to determine and prioritise those needs and appropriate responses, and adaptive management providing rigorous monitoring and evaluation to determine whether actions or their modifications meet both ecological and defined stakeholder needs. The flexibility of MSP will be enhanced by the systematic approach of SCP, while the rigorous monitoring of adaptive management will enable continued improvement as new information becomes available and further experience is gained.

Résumé: Atlantic bluefin tuna (ABFT) has always displayed spectacular changes in its spatial distribution, but the underlying mechanism of such variations still remains obscure. This study focuses on this challenging issue by scrutinizing the intriguing ‘Brazilian episode’ during which a large quantity of ABFT (a temperate species) was caught during the 1960s in the equatorial Atlantic. To investigate this event, we applied a niche model to an extensive data set of catch and environmental variables from 1960 to 2009. ABFT exhibited a remarkably large ecological niche, which matches well with our current knowledge of ABFT. Our results also depicted a high probability of ABFT occurrence in the South Atlantic and, more interestingly, favorable environmental conditions in the western equatorial Atlantic during the 1960s, but not later. ABFT could thus have migrated from their northern spawning grounds to the South Atlantic during the 1960s through the western equatorial Atlantic, playing the role of an ‘ecological bridge’. We argue that the rarity of ABFT in the southern Atlantic during the last four decades would result from the interaction of several processes, particularly oceanographic conditions, migratory behavior, density-dependence, exploitation levels and population structure. Examination of the catch data further indicated that the fish caught in the equatorial Atlantic were from the western stock and we concluded that the lack of rebuilding of this stock could result from a regime shift due to the combination of oceanographic changes in the equatorial Atlantic and overfishing in the North Atlantic in the 1960s and 1970s.

Résumé: It is difficult to address all of the direct environmental impacts of fisheries using conventional methods of Life Cycle Assessment (LCA). A methodological framework was developed that calculates regionalised characterisation factors for biomass uptake by fishing activities to assess impacts of biotic-resource depletion at both species and ecosystem levels. These two levels were studied to include effects of catch on the collapse of a particular stock of a given species and on total biomass availability in oceans. Characterisation factors were calculated for 127 fish species and 88 marine provinces. The compatibility of this method with other frameworks is discussed, as well as the methodological limitations. The method was applied to two contrasting examples from fisheries (Northern Atlantic albacore tuna and Northern Argentine anchovy). The impacts of one tonne of tuna on biotic natural resources were 4 and 14 times as high as those of anchovy at the ecosystem and species levels, respectively. The application demonstrates that the method is relevant, as it addresses a topic of global interest and fills a gap in LCA impact assessment to contrast impacts of removals of different fish species in terms of biotic natural resource depletion.

Résumé: Forage fish play a pivotal role in marine ecosystems and economies worldwide by sustaining many predators and fisheries directly and indirectly. We estimate global forage fish contributions to marine ecosystems through a synthesis of 72 published Ecopath models from around the world. Three distinct contributions of forage fish were examined: (i) the ecological support service of forage fish to predators in marine ecosystems, (ii) the total catch and value of forage fisheries and (iii) the support service of forage fish to the catch and value of other commercially targeted predators. Forage fish use and value varied and exhibited patterns across latitudes and ecosystem types. Forage fish supported many kinds of predators, including fish, seabirds, marine mammals and squid. Overall, forage fish contribute a total of about 16.9 billion USD to global fisheries values annually, i.e. 20% of the global ex-vessel catch values of all marine fisheries combined. While the global catch value of forage fisheries was 5.6 billion, fisheries supported by forage fish were more than twice as valuable (11.3 billion). These estimates provide important information for evaluating the trade-offs of various uses of forage fish across ecosystem types, latitudes and globally. We did not estimate a monetary value for supportive contributions of forage fish to recreational fisheries or to uses unrelated to fisheries, and thus the estimates of economic value reported herein understate the global value of forage fishes.

Résumé: It has been previously established that the Leopard Whipray, Himantura leoparda, consists of two genetically isolated, cryptic species, provisionally designated as 'Cluster 1' and 'Cluster 4' (Arlyza et al., Mol. Phylogenet. Evol. 65 (2013) [11). Here, we show that the two cryptic species differ by the spotting patterns on the dorsal surface of adults: Cluster-4 individuals tend to have larger-ocellated spots, which also more often have a continuous contour than Cluster-1 individuals. We show that H. leopard a's holotype has the typical larger-ocellated spot pattern, designating Cluster 4 as the actual H. leoparda. The other species (Cluster 1) is described as Himantura tutul sp. nov. on the basis of the nucleotide sequence of a 655-base pair fragment of its cytochrome-oxidase I gene (GENBANK accession No. JX263335). Nucleotide synapomorphies at this locus clearly distinguish H. tutul sp. nov. from all three other valid species in the H. uarnak species complex, namely H. leoparda, H. uarnak, and H. undulata. H. tutul sp. nov. has a wide distribution in the Indo-West Pacific, from the shores of eastern Africa to the Indo-Malay archipelago. H. leoparda under its new definition has a similarly wide Indo-West Pacific distribution. (C) 2013 Academie des sciences. Published by Elsevier Masson SAS. All rights reserved.

Résumé: Grüss, A., Kaplan, D. M., and Robinson, J. Evaluation of the effectiveness of marine reserves for transient spawning aggregations in data-limited situations. – ICES Journal of Marine Science, doi:10.1093/icesjms/fst028. Many coral reef fish species form predictable, transient spawning aggregations. Many aggregations are overfished, making them a target for spatial management. Here, we develop a per-recruit model to evaluate the performance of no-take marine reserves protecting transient spawning aggregations. The model consists of only 14 demographic and exploitation-related parameters. We applied the model to a protogynous grouper and a gonochoristic rabbitfish from Seychelles and tested six scenarios regarding the extent of protected areas, the level of fish spawning-site fidelity, and fishing effort redistribution post reserve implementation. Spawning aggregation reserves improve spawning-stock biomass-per-recruit and reduce the sex ratio bias in protogynous populations for all scenarios examined. However, these benefits are often small and vary among the different scenarios and as a function of sexual ontogeny. In all scenarios, increases in yield-per-recruit do not occur or are negligible. The long-term yield increases due to spawning aggregation reserves may still occur, but only if spawning-stock biomass recovery results in a recruitment subsidy. Given these limited benefits, the value of no-take reserves must be weighed against those of other management options, such as fishing effort reduction and seasonal fishery closures. The latter is particularly appropriate when spawning and non-spawning areas overlap in space.

Résumé: Climate impacts are now widely reported from coastal marine systems, but less is known for the open ocean. Here we review progress in understanding impacts on large pelagic species presented at an international workshop for the Climate Impacts on Oceanic Top Predators programme, and discuss the future with regard to the next phase of adaptation-focused research. Recent highlights include a plan to map the distribution of key species in the foodweb using both acoustics and biochemical techniques, and development of a new data sharing and access tool for fisheries and associated data, including socio-economic information. A common research focus in pelagic ecosystems is on understanding climate variability and climate change impacts on marine species, but a greater emphasis on developing future scenarios and adaptation options is needed. Workshop participants also concluded that engagement with and provision of science support to regional fisheries management organisations are critical elements for ensuring successful uptake of research. This uptake will be required for future management of fisheries as global warming continues such that some open ocean top predators can be sustainably harvested, impacts on conservation-dependent species can be avoided, and ecosystem function is not compromised.

Résumé: A number of marine mammal populations is currently threatened by their interactions with fisheries. The present study aimed to provide insights into the severity of potential impacts of operational and biological interactions between top predators and fisheries, in the Bay of Biscay region. Our approach was to modify an Ecopath with Ecosim (EwE) model describing the overall structure and function of the ecosystem by including landings and discards of exploited stocks and estimations of the bycatch of non-target compartments. Second, a set of ecological indices and a trophic level (TL)-based model (EcoTroph, ET) were derived from the EwE model. ET was used to simulate the effects of increasing fishing pressure on the ecosystem and, more particularly, on top predators. The Bay of Biscay was demonstrated to be not far from overexploitation at the current fishing rate, this phenomenon being particularly noticeable for the highest TLs. Within the toothed cetacean community, bottlenose dolphins appeared the most sensitive to resource depletion, whereas common dolphins and harbour porpoises were most impacted by their incidental captures in fishing gears. This study provides a methodological framework to assess the impacts of fisheries on ecosystems for which EwE, or other ecosystem models, already exist.

Résumé: Tropical shrimp fisheries are characterized by various interactions with their natural environment and with other fisheries. These latter interactions can be explained by the high quantity of bycatch taken by industrial trawler fleets, which has a significant impact on fish populations associated with shrimps and thus also on finfish fisheries. Bycatch also includes emblematic species, which are subject to strict conservation measures decided by the international community. It seems important to identify and assess the biological and economic consequences of different mitigation measures (increase of mesh size, turtle excluder devices and bycatch reducing devices). This communication is based on case studies undertaken on the Indian white prawn (Fenneropenaeus indicus) and speckled shrimp (Metapenaeus monoceros) fisheries in Madagascar and on the brown shrimp (Farfantepenaeus subtilis) and pink spotted shrimp (Farfantepenaeus brasiliensis) fishery in French Guiana. A review of the impacts of these fisheries on resources and ecosystems is made and some results of experiments on mitigation devices given. Finally, the results of simulations obtained using a multi-species, multi-fleet, age-structured bioeconomic model, including modifications of catchability and costs related to the adoption of these devices, is presented and discussed.

Résumé: Marine protected areas (MPAs) have the potential to enhance the long-term sustainability of coastal resources, and the artisanal fisheries which depend on them. However, recreational fisheries, which are increasing their impacts on coastal resources worldwide, may reduce the benefits that MPAs provide to declining artisanal fisheries. Here we used the Bonifacio Straits Natural Reserve (BSNR) Corsica as a study case to simulate the combined effects on coastal resources of artisanal and recreational fishing efforts. The BSNR ecosystem was modelled using mass-balance modelling of trophic interactions. This model was compared to another built on a non-protected area from the same region. We aggregated fishing fleets into artisanal and recreational categories, and we simulated various combinations of fishing effort over a 20 yr dynamic simulation using Ecosim. We showed that fishing activities have an additional top-down effect on the food web and that they decrease the targeted group's biomass, such as piscivorous species. We found, for some trophic groups, non-trivial patterns of biomass variation through trophic cascades. Our trophic approach revealed that some groups may suffer a biomass decrease when MPAs are set or enforced, due to the combined effect of artisanal and recreational fisheries. Overall, our results illustrate the value of modelling to manage MPAs, as a complementary tool to surveys. Models provide the opportunity to anticipate the potential consequences, at the ecosystem level, of socio-political decisions that aim to sustain coastal resources while managing artisanal and recreational fisheries.

Résumé: Blanchard, J. L., Coll, M., Trenkel, V. M., Vergnon, R., Yemane, D., Jouffre, D., Link, J. S., and Shin, Y-J. 2010. Trend analysis of indicators: a comparison of recent changes in the status of marine ecosystems around the world. – ICES Journal of Marine Science, 67: 732-744.

Résumé: Modern fisheries research and management must understand and take account of the interactions between climate and fishing, rather than try to disentangle their effects and address each separately. These interactions are significant drivers of change in exploited marine systems and have ramifications for ecosystems and those who depend on the services they provide. We discuss how fishing and climate forcing interact on individual fish, marine populations, marine communities, and ecosystems to bring these levels into states that are more sensitive to (i.e. more strongly related with) climate forcing. Fishing is unlikely to alter the sensitivities of individual finfish and invertebrates to climate forcing. It will remove individuals with specific characteristics from the gene pool, thereby affecting structure and function at higher levels of organisation. Fishing leads to a loss of older age classes, spatial contraction, loss of sub-units, and alteration of life history traits in populations, making them more sensitive to climate variability at interannual to interdecadal scales. Fishing reduces the mean size of individuals and mean trophic level of communities, decreasing their turnover time leading them to track environmental variability more closely. Marine ecosystems under intense exploitation evolve towards stronger bottom-up control and greater sensitivity to climate forcing. Because climate change occurs slowly, its effects are not likely to have immediate impacts on marine systems but will be manifest as the accumulation of the interactions between fishing and climate variability – unless threshold limits are exceeded. Marine resource managers need to develop approaches which maintain the resilience of individuals, populations, communities and ecosystems to the combined and interacting effects of climate and fishing. Overall, a less-heavily fished marine system, and one which shifts the focus from individual species to functional groups and fish communities, is likely to provide more stable catches with climate variability and change than would a heavily fished system. Crown Copyright (C) 2009 Published by Elsevier B.V. All rights reserved.

Résumé: Shannon, L. J., Coll, M., Yemane, D., Jouffre, D., Neira, S., Bertrand, A., Diaz, E., and Shin, Y-J. 2010. Comparing data-based indicators across upwelling and comparable systems for communicating ecosystem states and trends. – ICES Journal of Marine Science, 67: 807-832.

Résumé: The use of genetic, biochemical and electronic markers in population biology and ecology has been growing tremendously during the last two decades. The first part of this paper aims at reviewing the main principles and advances of these individual markers through a few key applications on exploited marine fish populations. The second part is more prospective and investigates some possibilities that could arise in the near future through: (i) the development of new markers, (ii) the combination of different markers and (iii) the combination of quantitative approaches-whether classical or new-with individual markers. It is finally stressed how crucial individual markers will be to unravel the biocomplexity of wild fish populations and the key role they should play in the implementation of the ecosystem approach to fisheries.

Résumé: To explore the drivers of change in the complex system relating small pelagic fisheries and fishmeal/fish oil markets, to identify the interactions between these drivers and their overall impacts, we propose a bio-economic model, coupling the ecological and the economic dynamics of these global commodities. The model enables an analysis of the consequences of both global and local changes in the environment of production systems. Through sensitivity analysis of specific input parameters, we evaluate the robustness of the overall system to such changes and show that local responses of production systems and markets cannot be considered in isolation from the set of interactions at global level.