Résumé: The little information available on fuel consumption and emissions by high seas tuna fisheries indicates that the global tuna fleet may have consumed about 2.5 Mt of fuel in 2009, resulting in the production of about 9 Mt of CO2-equivalent greenhouse gases (GHGs), i.e., about 4.5-5% of the global fishing fleet emissions. We developed a model of annual fuel consumption for the large-scale purse seiners operating in the western Indian Ocean as a function of fishing effort, strategy, and vessel characteristics based on an original and unique data set of more than 4,300 bunkering operations that spanned the period 2013-2019. We used the model to estimate the total fuel consumption and associated GHG and SO2 emissions of the Indian Ocean purse seine fishery between 1981 and 2019. Our results showed that the energetic performance of this fishery was characterized by strong interannual variability over the last four decades. This resulted from a combination of variations in tuna abundance but also changes in catchability and fishing strategy. In recent years, the increased targeting of schools associated with fish aggregating devices in response to market incentives combined with the IOTC management measure implemented to rebuild the stock of yellowfin tuna has strongly modified the productivity and spatio-temporal patterns of purse seine fishing. This had effects on fuel consumption and air pollutant emissions. Over the period 2015 to 2019, the purse seine fishery, including its support vessel component, annually consumed about 160,000 t of fuel and emitted 590,000 t of CO2-eq GHG. Furthermore, our results showed that air pollutant emissions can be significantly reduced when limits in fuel composition are imposed. In 2015, SO2 air pollution exceeded 1,500 t, but successive implementation of sulphur limits in the Indian Ocean purse seine fishery in 2016 and 2018 have almost eliminated this pollution. Our findings highlight the need for a routine monitoring of fuel consumption with standardized methods to better assess the determinants of fuel consumption in fisheries and the air pollutants they emit in the atmosphere.

Résumé: Beginning in the 1990's, Chile implemented an extensive Territorial User Rights for Fisheries (TURFs) network that now comprises nearly 1,000 TURFs. This network provides a rare opportunity to examine spatial and temporal trends in TURF use and impacts on surrounding open access areas (OAAs). In this analysis, landings of keyhole limpet (Fissurella spp.), kelp (Lessonia spp.) and red sea urchin (Loxechinus albus) were used to estimate catch-per-unit effort (CPUEs) and catch-per-unit area (CPUAs) indices inside and outside TURFs by fishing cove. For these species, CPUEs and CPUAs in 2015 were significantly higher inside TURFs. However, temporal trends analyzed with a linear mixed effects model indicate that CPUAs inside TURFs have been significantly decreasing since 2000 for keyhole limpet, red sea urchin and for loco (Concholepas concholepas), while in OAAs this measure only decreased for limpet. An elastic net regression was used to better explain catches in OAAs during 2015, including a variety of variables related to the characteristics and activity of proximal TURFs. Results indicate that exogenous factors unrelated to TURF management were the primary drivers of catches in OAAs during 2015 but that factors related to proximal TURFs appear to have a slight negative impact that grows over time. Collectively, these results indicate that while TURFs are associated with higher catch rates than surrounding OAAs, catch rates appear to be decreasing over time and, though limited, the impact of TURFs on surrounding OAAs may be negative. These findings suggest a need for a more nuanced and dynamic approach to spatial management on benthic resources in Chile.

Résumé: In many developing countries, small-scale fisheries provide employment and important food security for local populations. To support resource management, the description of the spatiotemporal extent of fisheries is necessary, but often poorly understood due to the diffuse nature of effort, operated from numerous small wooden vessels. Here, in Gabon, Central Africa, we applied Hidden Markov Models to detect fishing patterns in seven different fisheries (with different gears) from GPS data. Models were compared to information collected by on-board observers (7 trips) and, at a larger scale, to a visual interpretation method (99 trips). Models utilizing different sampling resolutions of GPS acquisition were also tested. Model prediction accuracy was high with GPS data sampling rates up to three minutes apart. The minor loss of accuracy linked to model classification is largely compensated by the savings in time required for analysis, especially in a context of nations or organizations with limited resources. This method could be applied to larger datasets at a national or international scale to identify and more adequately manage fishing effort.

Résumé: The growth of yellowfin tuna has been the subject of considerable research efforts since the early 1960s. Most studies support a complex two-stanza growth pattern with a sharp acceleration departing from the von Bertalanffy growth curve used for most fish populations. This growth pattern has been assumed to result from a combination of physiological, ecological and behavioral factors but the role and contribution of each of them have not been addressed yet. We developed a bioenergetic model for yellowfin tuna in the context of Dynamic Energy Budget theory to mechanistically represent the processes governing yellowfin tuna growth. Most parameters of the model were inferred from Pacific bluefin tuna using body-size scaling relationships while some essential parameters were estimated from biological data sets collected in the Indian Ocean. The model proved particularly suitable for reproducing the data collected during the Pacific yellowfin tuna farming experience conducted by the Inter-American Tropical Tuna Commission at the Achotines Laboratory in Panama. In addition, model predictions appeared in agreement with knowledge of the biology and ecology of wild yellowfin tuna. We used our model to explore through simulations two major assumptions that might explain the existence of growth stanzas observed in wild yellowfin tuna: (i) a lower food supply during juvenile stage in relation with high infra- and inter-species competition and (ii) ontogenetic changes in food diet. Our results show that both assumptions are plausible although none of them is self-sufficient to explain the intensity of growth acceleration observed in wild Indian Ocean yellowfin tuna, suggesting that the two factors may act in concert. Our study shows that the yellowfin growth pattern is likely due to behavioral changes triggered by the acquisition of physiological abilities and anatomical traits through ontogeny that result in a major change in intensity of schooling and in a shift in the biotic habitat and trophic ecology of this commercially important tuna species.

Résumé: Wilderness areas offer unparalleled ecosystem conditions. However, growing human populations and consumption are among factors that drive encroachment on these areas. Here, we explore the threat of small-scale fisheries to wilderness reefs by developing a framework and modeling fluctuations in fishery range with fuel costs and fish prices. We modeled biomass of four fishery groups across the New Caledonian archipelago, and used fish and fuel prices from 2005 to 2020 to estimate the extent of exploited reefs across three fishing scenarios. From 2012 to 2018, maximum profitable range increased from 15 to over 30 hr from the capital city, expanding to reefs previously uneconomic to fish, including a UNESCO heritage site. By 2020, over half of New Caledonian (similar to 17% global) wilderness reefs will become profitable to fish. Our results demonstrate that remoteness from humans should not be considered protection for wilderness coral reefs in the context of rising fish prices.

Résumé: Many deep-water fish populations, being K-selected species, have little resilience to overexploitation and may be at serious risk of depletion as a consequence. Sea warming represents an additional threat. In this study, the condition, or health, of several populations of common ling (Molva molva), blue ling (Molva dypterygia) and Mediterranean or Spanish ling (Molva macrophthalma) inhabiting different areas in the North Atlantic and the Mediterranean was evaluated, to shed light on the challenges these deep-water species are facing in the context of fishing activity and a warming climate. The data on the condition of Molva populations which are analysed here have been complemented with data on abundance and, for the southernmost species (Mediterranean ling), with two other health indicators (parasitism and hepato-somatic index). Despite some exceptions (e.g., common ling in Icelandic waters), this study shows that the condition of many populations of Molva species in the northeastern Atlantic and the Mediterranean Sea has worsened, a trend which, in recent decades, has usually been found to be accompanied by a decline in their abundance. In addition, the poor health status of most populations of common ling, blue ling and Mediterranean ling considered in this analysis points to a lower sustainability of these populations in the future. Overall, the health status and abundance of Molva populations in the northeastern Atlantic and the Mediterranean suggest that only some populations located in the North Atlantic may be able to rebuild, whereas the populations in southern North Atlantic and the Mediterranean, which are probably most at risk from sea warming, are facing serious difficulties in doing so. In the context of fisheries and global warming, this study's results strongly indicate that management bodies need to consider the health status of many of the populations of Molva species, particularly in southern European waters, before implementing their decisions.

Résumé: The La Perouse seamount (60 m depth) has so far been poorly studied despite it being a short distance (160 km) from Reunion Island. As part of the MADRidge project, a multidisciplinary cruise was conducted to evaluate the effect of this shallow seamount on the local hydrology and ecology. Current measurements, temperature and chlorophyll-a profiles, and mesozooplankton and micronekton samples were collected between the summit and 35 km away. Micronekton data were supplemented with stomach content of pelagic top predators as well as fisheries statistics from the domestic longline fleet operating from Reunion. Vertical current profiles revealed distinct patterns between the offshore and seamount-flanked stations, giving evidence of topographical induced flow instabilities, notably on its leeward side (west) relative to the east flank. Distinct patterns in temperature and chlorophyll-a vertical profiles suggest the formation of convergent and divergent circulation cells as a result of the irregular and crescent-like summit topography. Spatial differences in zooplankton abundance were detected with higher biovolumes on the leeward flank. The overall acoustic backscatter for micronekton over the summit was weaker than offshore, but highly concentrated in the upper layer. Albacore tuna and swordfish dominate the longline catch west of Reunion, seemingly in association with a deep (900 m) topographic feature. Yet the largest catch is not directly associated with La Perouse which would be too shallow for top predators to aggregate around in the long term. Enhanced levels of phytoplankton or zooplankton enrichment at La Perouse were not demonstrated in this study, nor was there notable diversity of micronekton species. This might explain the relatively limited importance of this seamount to the tuna fisheries in this region.

Résumé: The deep sea plays a critical role in global climate regulation through uptake and storage of heat and carbon dioxide. However, this regulating service causes warming, acidification and deoxygenation of deep waters, leading to decreased food availability at the seafloor. These changes and their projections are likely to affect productivity, biodiversity and distributions of deep-sea fauna, thereby compromising key ecosystem services. Understanding how climate change can lead to shifts in deep-sea species distributions is critically important in developing management measures. We used environmental niche modelling along with the best available species occurrence data and environmental parameters to model habitat suitability for key cold-water coral and commercially important deep-sea fish species under present-day (1951-2000) environmental conditions and to project changes under severe, high emissions future (2081-2100) climate projections (RCP8.5 scenario) for the North Atlantic Ocean. Our models projected a decrease of 28%-100% in suitable habitat for cold-water corals and a shift in suitable habitat for deep-sea fishes of 2.0 degrees-9.9 degrees towards higher latitudes. The largest reductions in suitable habitat were projected for the scleractinian coral Lophelia pertusa and the octocoral Paragorgia arborea, with declines of at least 79% and 99% respectively. We projected the expansion of suitable habitat by 2100 only for the fishes Helicolenus dactylopterus and Sebastes mentella (20%-30%), mostly through northern latitudinal range expansion. Our results projected limited climate refugia locations in the North Atlantic by 2100 for scleractinian corals (30%-42% of present-day suitable habitat), even smaller refugia locations for the octocorals Acanella arbuscula and Acanthogorgia armata (6%-14%), and almost no refugia for P. arborea. Our results emphasize the need to understand how anticipated climate change will affect the distribution of deep-sea species including commercially important fishes and foundation species, and highlight the importance of identifying and preserving climate refugia for a range of area-based planning and management tools.

Résumé: Compared with other ocean basins, little is known scientifically about the seamounts in the Indian Ocean. Nonetheless, fishers have plundered these fragile ecosystems for decades, and now mining is becoming a reality. We introduce a multidisciplinary project referred to as MAD-Ridge that recently focused on three shallow seamounts in the South West Indian Ocean between 19 degrees S and 34 degrees S. The larger Walters Shoal (summit at 18 m) discovered in 1963 occupies the southern part of the Madagascar Ridge and has long received attention from the fishing industry, and only recently by scientists. In contrast, nothing is known of the northern region of the ridge, which is characterised by a prominent, steep-sided seamount that has a flat circular summit at 240 m and width of similar to 20 km. This seamount is some 200 km south of Madagascar and unnamed; it is referred to here as the MAD-Ridge seamount. MAD-Ridge is the shallowest of a constellation of five deeper (>1200 m) seamounts on that part of the ridge, all within the EEZ of Madagascar. It lies in a highly dynamic region at the end of the East Madagascar Current, where mesoscale eddies are produced continuously, typically as dipoles. The Madagascar Ridge appears to be an area of great productivity, as suggested by the foraging behaviour of some tropical seabirds during chick-rearing and a longline fishery that operates there. The third seamount, La Perouse, is located between Reunion Island and Madagascar. With a summit 60 m below the sea surface, La Perouse is distinct from MAD-Ridge and Walters Shoal; it is a solitary pinnacle surrounded by deep abyssal plains and positioned in an oligotrophic region with low mesoscale activities. The overall aim of the MAD-Ridge project was to examine the flow structures induced by the abrupt topographies, and to evaluate whether biological responses could be detected that better explain the observed increased in fish and top predator biomasses. The MAD-Ridge project comprised a multidisciplinary team of senior and early career scientists, along with postgraduate students from France, South Africa, Mauritius and Madagascar. The investigation was based around three cruises using the French vessels RV Antea (35 m) and RV Marion Dufresne (120 m) in September 2016 (La Perouse), November-December 2016 (MAD-Ridge) and May 2017 (Walters Shoal). This manuscript presents the rationale for the MAD-Ridge project, the background, a description of the research approach including the cruises, and a synopsis of the results gathered in the papers published in this Special Issue.

Résumé: In the early 2000s, Senegal set up several Marine Protected Areas (MPAs) along its coastal zone with the purpose of biodiversity conservation and to support sustainable management of fisheries. However, the impact of MPAs may vary according to the type of fisheries. In Senegal, the sardinella fishery accounts for 70% of total catches. This fishery is of crucial importance for national food security and employment. Given this importance, it is necessary to evaluate the impact of MPAs, often being considered as a tool for fisheries management. An analytical, dynamic and spatial bio-economic model of sardinella fishery, considering fish and fisher migration, has been developed and scenarios over forty years have been analyzed. The results show that the fishery is economically overexploited and that Senegal could lose about 11.6 billion CFA over forty years of exploitation, i.e. 290 million CFA per year. To achieve an optimal level of exploitation, it would be necessary to halve the current fishing capacity. Implementing MPAs for 10, 20 and 30% of the Senegalese exclusive economic zone lead to slight increases in biomass (1%) and rent (5-11%). In addition, spatio-temporal closures can lead to increased exploitation in unclosed areas, due to the absence of enforcement. Achieving target 11 of the Aichi Convention, i.e., 10% of coastal and marine areas protected per country, will have a reserve effect on the resource but also only lead to weak improvements in economic indicators for the Senegalese fishery. Finally, because the sardinella resource is shared among many countries of the Sub-Regional Fisheries Commission (SRFC), a sub-regional cooperation is necessary for a sustainable management.

Résumé: The avoidance reaction by fish in front of an approaching vessel is a major source of bias in direct biomass assessment and ecological studies based on fisheries acoustics data. An experiment was carried out to compare echosounder data obtained using a small speedboat and a research fisheries vessel generating significant higher noise above conventional reduced-noise standard. The results show that there was no significant difference between the individual fish target strength distributions, and the numbers of schools recorded by both boats, these schools having similar areas and perimeters. However, the schools detected by the noisier vessel were significantly deeper, and unexpectedly had a significantly higher energy level. These findings suggest that noise-reduced vessels trigger a different vessel avoidance reaction. The noise-reduction standard is not sufficient to reduce avoidance behavior. It is also to take into consideration the ambient noise, which could impair perception of the platform by the fish, and the probability that the acoustic stimuli could be less important than visual perception under some local conditions. The paper introduces the concept of partial avoidance and presents a conceptual diagram of the strength of the avoidance reaction. Last, it is not recommended, because of noise reasons, that vessels routinely used for pelagic stock assessment surveys be changed. Indeed standardized time series, which could be disrupted when switching to a new vessel, are more important than the hypothetical gain from change to quieter vessels. Obviously, all long-term surveys must change vessels; best practice will be to estimate the vessel effect before any change to avoid disrupting the time series and/or perform vessel intercalibration surveys.

Résumé: Periodically harvested closures are a widespread, centuries-old form of fisheries management that protects fish between pulse harvests and can generate high harvest efficiency by reducing fish wariness of fishing gear. However, the ability for periodic closures to also support high fisheries yields and healthy marine ecosystems is uncertain, despite increased promotion of periodic closures for managing fisheries and conserving ecosystems in the Indo-Pacific. We developed a bioeconomic fisheries model that considers changes in fish wariness, based on empirical field research, and quantified the extent to which periodic closures can simultaneously maximize harvest efficiency, fisheries yield and conservation of fish stocks. We found that periodic closures with a harvest schedule represented by closure for one to a few years between a single pulse harvest event can generate equivalent fisheries yield and stock abundance levels and greater harvest efficiency than achievable under conventional fisheries management with or without a permanent closure. Optimality of periodic closures at maximizing the triple objective of high harvest efficiency, high fisheries yield, and high stock abundance was robust to fish life history traits and to all but extreme levels of overfishing. With moderate overfishing, there emerged a trade-off between periodic closures that maximized harvest efficiency and no-take permanent closures that maximized yield; however, the gain in harvest efficiency outweighed the loss in yield for periodic closures when compared with permanent closures. Only with extreme overfishing, where fishing under nonspatial management would reduce the stock to <= 18% of its unfished level, was the harvest efficiency benefit too small for periodic closures to best meet the triple objective compared with permanent closures. Synthesis and applications. We show that periodically harvested closures can, in most cases, simultaneously maximize harvest efficiency, fisheries yield, and fish stock conservation beyond that achievable by no-take permanent closures or nonspatial management. Our results also provide design guidance, indicating that short closure periods between pulse harvest events are most appropriate for well-managed fisheries or areas with large periodic closures, whereas longer closure periods are more appropriate for small periodic closure areas and overfished systems.

Résumé: In an ecosystem approach to fisheries management (EAFM) framework of the tuna purse-seine fishery, the assessment of target species, but also that of bycatch species, is essential. In the Atlantic and Indian oceans, purse-seine nets are sometimes set around tuna schools associated with whale sharks and baleen whales, although less frequently than around free-swimming tuna schools or those associated with fish aggregating devices (FAD). However, knowledge on the targeted catch and bycatch in these megafauna associated fishing sets is still relatively limited. Therefore, the aims of this study were to assess species and size composition of the target tuna species, as well as the diversity of bycatch species in whale and whale shark associated sets. Whale associated sets were found to be very similar to free school sets in terms of tuna catch (large yellowfin tuna), bycatch occurrence (presence in half the sets) and species assemblage (alpha and beta diversity). Whale shark associated sets were intermediate between FAD and free school sets, with tuna catch (skipjack and juvenile yellowfin) closer to FAD than to free school sets. However, the presence of large yellowfin, the bycatch composition (with almost no finfish, abundantly captured in FAD sets) and the species assemblage showed similarity with free school sets. This study highlights the need for an EAFM in the tuna purse-seine fishery by providing knowledge on pelagic multi-specific catches and bycatches.

Résumé: Bycatch in fisheries can have profound effects on the abundance of species with relatively low resilience to increased mortality, can alter the evolutionary characteristics and concomitant fitness of affected populations through heritable trait-based selective removals, and can alter ecosystem functions, structure and services through food web trophic links. We challenge current piecemeal bycatch management paradigms, which reduce the mortality of one taxon of conservation concern at the unintended expense of others. Bycatch mitigation measures may also reduce intraspecific genetic diversity. We drew examples of broadly prescribed ‘best practice’ methods to mitigate bycatch that result in unintended cross-taxa conflicts from pelagic longline, tuna purse seine, gillnet and trawl fisheries. We identified priority improvements in data quality and in understanding ecological effects of bycatch fishing mortality to support holistic ecological risk assessments of the effects of bycatch removals conducted through semi-quantitative and model-based approaches. A transition to integrated bycatch assessment and management that comprehensively consider biodiversity across its hierarchical manifestations is needed, where relative risks and conflicts from alternative bycatch management measures are evaluated and accounted for in fisheries decision-making processes. This would enable managers to select measures with intentional and acceptable tradeoffs to best meet objectives, when conflicts are unavoidable.

Résumé: Describing the spatial and temporal dynamics of communities is essential for understanding the impacts of global environmental change on biodiversity and ecosystem functioning. Trait-based approaches can provide better insight than species-based (i.e. taxonomic) approaches into community assembly and ecosystem functioning, but comparing species and trait dynamics may reveal important patterns for understanding community responses to environmental change. Here, we used a 33-year database of fish monitoring to compare the spatio-temporal dynamics of taxonomic and trait structure in North Sea fish communities. We found that the majority of variation in both taxonomic and trait structure was explained by a pronounced spatial gradient, with distinct communities in the southern and northern North Sea related to depth, sea surface temperature, salinity and bed shear stress. Both taxonomic and trait structure changed significantly over time; however taxonomically, communities in the south and north diverged towards different species, becoming more dissimilar over time, yet they converged towards the same traits regardless of species differences. In particular, communities shifted towards smaller, faster growing species with higher thermal preferences and pelagic water column position. Although taxonomic structure changed over time, its spatial distribution remained relatively stable, whereas in trait structure, the southern zone of the North Sea shifted northward and expanded, leading to homogenization. Our findings suggest that global environmental change, notably climate warming, will lead to convergence towards traits more adapted for novel environments regardless of species composition.

Résumé: The Mediterranean Sea is one of the main hotspots of marine biodiversity in the world. The combined pressures of fishing activity and climate change have also made it a hotspot of global change amidst increasing concern about the worsening status of exploited marine species. To anticipate the impacts of global changes in the Mediterranean Sea, more integrated modelling approaches are needed, which can then help policymakers prioritize management actions and formulate strategies to mitigate impacts and adapt to changes. The aim of this study was to develop a holistic model of marine biodiversity in the Mediterranean Sea with an explicit representation of the spatial, multispecies dynamics of exploited resources subject to the combined influence of climate variability and fishing pressure. To this end, we used the individual-based OSMOSE model (Object-oriented Simulator of Marine ecOSystEms), including 100 marine species (fish, cephalopods and crustaceans) representing about 95% of the total declared catch, at a high spatial resolution (400 km2) and a large spatial scale (the entire Mediterranean basin) – the first time such a resolution and scale have been modelled. We then combined OSMOSE with the NEMOMED 12 physical model and the Eco3M-S biogeochemical low trophic level model to build the end-to-end model, OSMOSE-MED. We fitted OSMOSE-MED model with observed or estimated biomass and commercial catch data using a likelihood approach and an evolutionary optimization algorithm. The outputs of OSMOSE-MED were then verified against observed biomass and catch data, and compared with independent datasets (MEDITS data, diet composition and trophic levels). The model results – at different hierarchical levels, from individuals to the scale of the ecosystem – were consistent with current knowledge of the structure, functioning and dynamics of the ecosystems in the Mediterranean Sea. While the model could be further improved in future iterations, all the modelling steps – the comprehensive representation of key ecological processes and feedback, the selective parameterization of the model, and the comparison with observed data in the validation process – strengthened the predictive performance of OSMOSE-MED and thus its relevance as an impact model to explore the future of marine biodiversity under scenarios of global change. It is a promising tool to support ecosystem-based fishery management in the Mediterranean Sea.

Résumé: Anticipating future changes in marine social-ecological systems (MSES) several decades into the future is essential in the context of accelerating global change. This is challenging in situations where actors do not share common understandings, practices, or visions about the future. We introduce a dedicated scenario method for the development of MSES scenarios in a participatory context. The objective is to allow different actors to jointly develop scenarios which contain their multiple visions of the future. The method starts from four perspectives: “fisheries management,” “ecosystem,” “ocean climate,” and “global context and governance” for which current status and recent trends are summarized. Contrasted scenarios about possible futures are elaborated for each of the four single perspectives before being integrated into multiple-perspective scenarios. Selected scenarios are then developed into storylines. Focusing on individual perspectives until near the end allows actors with diverse cultures, interests and horizons to confront their own notions of the future. We illustrate the method with the exploration of the futures of the Barents Sea MSES by 2050. We emphasize the following lessons learned: first, many actors are not familiar with scenario building and attention must be paid to explaining the purpose, methodology, and benefits of scenarios exercises. Second, although the Barents Sea MSES is relatively well understood, uncertainties about its future are significant. Third, it is important to focus on unlikely events. Fourth, all perspectives should be treated equally. Fifth, as MSES are continuously changing, we can only be prepared for future changes if we collectively keep preparing.

Résumé: Biological traits of Oreochromis niloticus were studied in order to identify potential differences between the population of the Nam Theun 2 Reservoir and other populations in Asia and in Africa. The study also aimed to characterize the demographic structure of the exploited population by fisheries in the reservoir. Toluidine-stained transverse section of otoliths from 322 specimens, collected between November 2015 and January 2017, were analysed to identify the periodicity of annulus formation and to age individuals. Length, weight, sex and sexual maturity stage were recorded. Life history traits were characterized by length-weight and length age relationships. The periodicity of annulus formation was annual, with complete formation of the translucent zone at the beginning of the warm and wet season (June and July). The length-age key has been established and was composed of 9 age classes, ranging from 0 to 8 years old. Males showed positive allometric growth whereas juveniles and females exhibited isometric growth. The study showed an asymptotic standard length of 658 mm and a low growth rate (K = 0.08 year(-1)). The sex ratio was equilibrated, and first maturity of females was at 277 mm standard length. The population was composed of individuals aged 3 years old and older, and 60% of the landings were composed of individuals aged 5 years and older. The growth rate was lower than for Asian and African populations, and the age-length key provided was specific to the studied reservoir. However, some biological traits of the O. niloticus population were similar to those found for other population in the world: (i) formation of an annual annulus during the reproduction period, at the beginning of the warm and wet season like populations from subtropical countries, and (ii) an isometric or a positive allometric growth as seen in populations that were not overexploited and were living in favourable environmental conditions. Therefore, the present study suggests that the O. niloticus population of the NT2 Reservoir was not overexploited at the time of the survey.

Résumé: The blue shark Prionace glauca, among the most common and widely studied pelagic sharks, is a top predator, exhibiting the widest distribution range. However, little is known about its population structure and spatial dynamics. With an estimated removal of 10–20 million individuals per year by fisheries, the species is classified as “Near Threatened” by International Union for Conservation of Nature. We lack the knowledge to forecast the long-term consequences of such a huge removal on this top predator itself and on its trophic network. The genetic analysis of more than 200 samples collected at broad scale (from Mediterranean Sea, North Atlantic and Pacific Oceans) using mtDNA and nine microsatellite markers allowed to detect signatures of genetic bottlenecks but a nearly complete genetic homogeneity across the entire studied range. This apparent panmixia could be explained by a genetic lag-time effect illustrated by simulations of demographic changes that were not detectable through standard genetic analysis before a long transitional phase here introduced as the “population grey zone.” The results presented here can thus encompass distinct explanatory scenarios spanning from a single demographic population to several independent populations. This limitation prevents the genetic-based delineation of stocks and thus the ability to anticipate the consequences of severe depletions at all scales. More information is required for the conservation of population(s) and management of stocks, which may be provided by large-scale sampling not only of individuals worldwide, but also of loci genomewide.

Résumé: The French initial assessment of the Marine Strategy Framework Directive (MSFD) highlighted the lack of reliable data concerning offshore areas. During the planning of the monitoring programmes, the scientists therefore proposed to partially cover this gap by using existing fisheries research vessel surveys deployed for the purposes of the Common Fisheries Policy (CFP). This paper describes ways of improving the effectiveness of these surveys and making them better suited to delivering the information needed for the MSFD. The process took two years and became operational at the beginning of the year 2016. Testing phases from October 2013 to August 2015 had to be organized to fit within the ongoing fisheries tasks without significantly increasing the workload in terms of both time and human resources. Six fisheries research surveys henceforth collect new data, with or without additional sampling techniques. Specific examples are given with litter and hydrological data which will be used to assess the environmental status of French marine waters. The paper also identifies certain limitations regarding this approach. This French experiment enabled more efficient and effective use of current data collection efforts, while optimising vessel time and implementing an ecosystem approach in collecting data for fisheries management.

Résumé: Coral reefs provide ecosystem goods and services for millions of people in the tropics, but reef conditions are declining worldwide. Effective solutions to the crisis facing coral reefs depend in part on understanding the context under which different types of conservation benefits can be maximized. Our global analysis of nearly 1,800 tropical reefs reveals how the intensity of human impacts in the surrounding seascape, measured as a function of human population size and accessibility to reefs (“gravity”), diminishes the effectiveness of marine reserves at sustaining reef fish biomass and the presence of top predators, even where compliance with reserve rules is high. Critically, fish biomass in high-compliance marine reserves located where human impacts were intensive tended to be less than a quarter that of reserves where human impacts were low. Similarly, the probability of encountering top predators on reefs with high human impacts was close to zero, even in high-compliance marine reserves. However, we find that the relative difference between openly fished sites and reserves (what we refer to as conservation gains) are highest for fish biomass (excluding predators) where human impacts are moderate and for top predators where human impacts are low. Our results illustrate critical ecological trade-offs in meeting key conservation objectives: reserves placed where there are moderate-to-high human impacts can provide substantial conservation gains for fish biomass, yet they are unlikely to support key ecosystem functions like higher-order predation, which is more prevalent in reserve locations with low human impacts.

Résumé: 1. Periodically harvested closures (PHCs) are one of the most common forms of fisheries management in Melanesia, demonstrating multiple objectives, including sustaining fish stocks and increasing catch efficiency to support small-scale fisheries. No studies have comprehensively assessed their ability to provide short-term fisheries benefits across the entire harvest regime. 2. We present a novel analytical framework to guide a meta-analysis and assist future research in conceptualizing and assessing the potential of PHCs to deliver benefits for multiple fisheries-related objectives. 3. Ten PHCs met our selection criteria and on average, they provided a 48% greater abundance and 92% greater biomass of targeted fishes compared with areas open to fishing prior to being harvested. 4. This translated into tangible harvest benefits, with fishers removing 21% of the abundance and 49% of the biomass within PHCs, resulting in few post-harvest protection benefits. 5. When PHCs are larger, closed for longer periods or well enforced, short-term fisheries benefits are improved. However, an increased availability of fish within PHCs leads to greater removal during harvests. 6. Synthesis and applications. Periodically harvested closures (PHCs) can provide short-term fisheries benefits. Use of the analytical framework presented here will assist in determining long-term fisheries and conservation benefits. We recommend PHCs be closed to fishing for as long as possible, be as large as possible, that compliance be encouraged via community engagement and enforcement, and strict deadlines/goals for harvesting set to prevent overfishing.

Résumé: Life cycle assessment (LCA) is the normed and international framework for assessing the environmental impacts of most human activities. LCA is commonly used to assess various aspects of fisheries but is only at the onset for estimating impacts of fish removal. This study proposes original characterization factors (CFs) to quantify impacts on biotic resources using the mass of fish caught. This mid-point assessment occurs in impact pathways leading to natural resources, one of the three areas of protection in LCA, and thus fisheries can be compared according to the depleted stock fraction. CFs are defined by the marginal approach applied to the Schaefer model, representing the dynamics of the stocks. They combine catches, current biomass and maximum intrinsic growth rates, determined from the application of the CMSY algorithm (Froese etal. (2017), Fish Fish, 18, 506) with FAO and FishBase data. A multistock CF is also proposed and used for multispecies-stocks. CFs for the 4,993 stocks defined from global FAO areas are obtained and sorted according to the robustness of the model hypotheses. CF values among stocks generally tend to decrease when fish catches increase because high catches are generally associated with abundant stocks. Multispecies-stocks CFs for the northeast Atlantic Ocean are compared to ICES-based CFs and are reliable for the main fished stocks. With this simple and generic structure, this operational fish resource depletion potential could be extended to other biotic resources.

Résumé: Climate variability plays a central role in the dynamics of marine pelagic ecosystems shaping the structure and abundance changes of plankton communities, thereby affecting energy pathways and biogeochemical fluxes in the ocean. Here we have investigated complex interactions driven a climate-hydrology-plankton system in the southern East China Sea over the period 2000 to 2012. In particular, we aimed at quantifying the influence of climate phenomena playing out in tropical (El Nino 3.4) and middle-high latitudes (East Asia Winter Monsoon, EAWM, and Pacific Decadal Oscillation, PDO) on pelagic copepods. We found that the EAWM and El Nino 3.4 showed a non-stationary and non-linear relationship with local temperature variability. In the two cases, the strength of the relationship, as indexed by the wavelet coherence analysis, decreased along with the positive phase of the PDO. Likewise, the influence of EAWM and El Nino 3.4 on copepods exhibited a non-stationary link that changed along with the PDO state. Indeed, copepods and EAWM were closely related during the positive phase, while the link copepods-El Nino 3.4 was stronger during the negative phase. Our results pointed out cascading effects from climate to plankton driven by the positive phase of the PDO through its effect on temperature conditions, and likely through a larger southward transport of nutrient-rich water masses to northern Taiwan and the Taiwan Strait. We suggest a chain of mechanisms whereby the PDO shapes interannual dynamics of pelagic copepods and highlight that these results have implications for integrative management measures, as pelagic copepods plays a prominent role in food web dynamics and for harvested fish in the East China Sea.

Résumé: We compiled and analysed logbook data from the French trawl albacore fishery covering the period 1991-2015. The dataset comprised catch and effort data for the French fleet operating in the Bay of Biscay and Celtic Sea, as well as spatiotemporal and gear characteristics. Generalized linear modelling was used to model spatial, seasonal, environmental, and gear covariates of fleet CPUE rates. A long-term index of relative abundance is provided that can be integrated into the stock assessment of North Atlantic albacore. The analysis revealed higher albacore CPUE associated with relatively low sea surface temperature and distinct seasonal effects. The derived abundance trend for the French trawl fishery agreed with the estimated time series of stock abundance from recent assessments.

Résumé: Increasing the size and number of marine protected areas (MPAs) is widely seen as a way to meet ambitious biodiversity and sustainable development goals. Yet, debate still exists on the effectiveness of MPAs in achieving ecological and societal objectives. Although the literature provides significant evidence of the ecological effects of MPAs within their boundaries, much remains to be learned about the ecological and social effects of MPAs on regional and seascape scales. Key to improving the effectiveness of MPAs, and ensuring that they achieve desired outcomes, will be better monitoring that includes ecological and social data collected inside and outside of MPAs. This can lead to more conclusive evidence about what is working, what is not, and why. Eight authors were asked to write about their experiences with MPA effectiveness. The authors were instructed to clearly define “effectiveness” and discuss the degree to which they felt MPAs had achieved or failed to be effective. Essays were exchanged among authors and each was invited to write a shorter “counterpoint.” The exercise shows that, while experiences are diverse, many authors found common ground regarding the role of MPAs in achieving conservation targets. This exchange of perspectives is intended to promote reflection, analysis, and dialogue as a means for improving MPA design, assessment, and integration with other conservation tools.

Résumé: Depredation in marine ecosystems is defined as the damage or removal of fish or bait from fishing gear by predators. Depredation raises concerns about the conservation of species involved, fisheries yield and profitability, and reference points based on stock assessment of depredated species. Therefore, the development of accurate indicators to assess the impact of depredation is needed. Both the Reunion Island and the Seychelles archipelago pelagic longline fisheries targeting swordfish (Xiphias gladius) and tuna (Thunnus spp.) are affected by depredation from toothed whales and pelagic sharks. In this study, we used fishery data collected between 2004 and 2015 to propose depredation indicators and to assess depredation levels in both fisheries. For both fisheries, the interaction rate (depredation occurrence) was significantly higher for shark compared to toothed whale depredation. However, when depredation occurred, toothed whale depredation impact was significantly higher than shark depredation impact, with higher depredation per unit effort (number of fish depredated per 1000 hooks) and damage rate (proportion of fish depredated per depredated set). The gross depredation rate in the Seychelles was 18.3%. A slight increase of the gross depredation rate was observed for the Reunion Island longline fleet from 2011 (4.1% in 2007–2010 and 4.4% in 2011–2015). Economic losses due to depredation were estimated by using these indicators and published official statistics. A loss of 0.09 EUR/hook due to depredation was estimated for the Reunion Island longline fleet, and 0.86 EUR/hook for the Seychelles. These results suggest a southward decreasing toothed whale and shark depredation gradient in the southwest Indian Ocean. Seychelles depredation levels are among the highest observed in the world revealing this area as a “hotspot” of interaction between pelagic longline fisheries and toothed whales. This study also highlights the need for a set of depredation indicators to allow for a global comparison of depredation rates among various fishing grounds worldwide.

Résumé: Ecological indicators are widely used to characterise ecosystem health. In the marine environment, indicators have been developed to assess the ecosystem effects of fishing to support an ecosystem approach to fisheries. However, very little work on the performance and robustness of ecological indicators has been carried out. An important aspect of robustness is that indicators should respond specifically to changes in the pressures they are designed to detect (e.g. fishing) rather than changes in other drivers (e.g. environment). We adopted a multi-model approach to compare and test the specificity of commonly used ecological indicators to capture fishing effects in the presence of environmental change and under different fishing strategies. We tested specificity in the presence of two types of environmental change: “random”, representing interannual climate variability and “directional”, representing climate change. We used phytoplankton biomass as a proxy of the environmental conditions, as this driver was comparable across all ecosystem models, then applied a signal-to-noise ratio analysis to test the specificity of indicators with random environmental change. For directional change, we used mean gradients to apportion the quantity of change in the indicators due to fishing and the environment. We found that depending on the fishing strategy and environmental change, ecological indicators could range from high to low specificity to fishing. As expected, the specificity of indicators to fishing almost always decreased as environmental variability increased. In 55–76% of the scenarios run with directional change in phytoplankton biomass across fishing strategies and ecosystem models, indicators were significantly more responsive to changes in fishing than to changes in phytoplankton biomass. This important result makes the tested ecological indicators good candidates to support fisheries management in a changing environment. Among the indicators, the catch over biomass ratio was most often the most specific indicator to fishing, whereas mean length was most often the most sensitive to change in phytoplankton biomass. However, the responses of indicators were highly variable depending on the ecosystem and fishing strategy under consideration. We therefore recommend that indicators should be tested in the particular ecosystem before they are used for monitoring and management purposes.

Résumé: Marine protected areas (MPAs) are key tools to mitigate human impacts in coastal environments, promoting sustainable activities to conserve biodiversity. The designation of MPAs alone may not result in the lessening of some human threats, which is highly dependent on management goals and the related specific regulations that are adopted. Here, we develop and operationalize a local threat assessment framework. We develop indices to quantify the effectiveness of MPAs (or individual zones within MPAs in the case of multiple-use MPAs) in reducing anthropogenic extractive and non-extractive threats operating at local scale, focusing specifically on threats that can be managed through MPAs. We apply this framework in 15 Mediterranean MPAs to assess their threat reduction capacity. We show that fully protected areas effectively eliminate extractive activities, whereas the intensity of artisanal and recreational fishing within partially protected areas, paradoxically, is higher than that found outside MPAs, questioning their ability at reaching conservation targets. In addition, both fully and partially protected areas attract non-extractive activities that are potential threats. Overall, only three of the 15 MPAs had lower intensities for the entire set of eight threats considered, in respect to adjacent control unprotected areas. Understanding the intensity and occurrence of human threats operating at the local scale inside and around MPAs is important for assessing MPAs effectiveness in achieving the goals they have been designed for, informing management strategies, and prioritizing specific actions.

Résumé: Small pelagics are the main fish resource in North West Africa. In Senegal, these are mainly sardinellas (Sardinella aurita and S. maderensis) and bonga shad (Ethmalosa fimbriata). The fisheries, mainly encircling gillnets and purse seines, are predominantly performed by artisanal fishers and are of great importance for the Senegalese economy and for food security in the region. However, in recent years, the main conditions for these fisheries have changed and recent observations have shown strong declines in profit. An analysis over the last twenty years (1993-2013) show that the fisheries lost profit between 65% and 100% while operating costs increased by 25% and 90%, for encircling gillnet and purse seine, respectively. While the fuel price dominates as determining factor during the survey period, important other drivers during the last five years were a decrease in fish biomass and an increase in fishing effort.

Résumé: The mineral composition of target and non-target pelagic fish caught by purse-seiners and longliners in the western-central Indian Ocean was determined. From the 10 essential elements analysed, selenium and zinc showed the highest concentrations in swordfish and blue marlin while Indian mackerel appeared as a good source of copper, iron and chrome. All catch had levels of lead and cadmium, two toxic elements, below the maximum sanitary limits. Although some concerns were raised regarding mercury concentrations in the largest species (wahoo, swordfish and blue marlin), molar ratios of mercury and selenium indicate that all oceanic pelagic fish from the western-central Indian Ocean are safe for human consumption. This study also gives insights on the relationships between the levels of essential and toxic elements in fish muscle and the size, trophic position and diet sources of the studied pelagic species. (C) 2017 Elsevier Ltd. All rights reserved.

Résumé: Fisheries have had major negative impacts on marine ecosystems, and effective fisheries management and governance are needed to achieve sustainable fisheries, biodiversity conservation goals and thus good ecosystem status. To date, the IndiSeas programme (Indicators for the Seas) has focussed on assessing the ecological impacts of fishing at the ecosystem scale using ecological indicators. Here, we explore fisheries ‘Management Effectiveness’ and ‘Governance Quality’ and relate this to ecosystem health and status. We developed a dedicated expert survey, focused at the ecosystem level, with a series of questions addressing aspects of management and governance, from an ecosystem-based perspective, using objective and evidence-based criteria. The survey was completed by ecosystem experts (managers and scientists) and results analysed using ranking and multivariate methods. Results were further examined for selected ecosystems, using expert knowledge, to explore the overall findings in greater depth. Higher scores for ‘Management Effectiveness’ and ‘Governance Quality’ were significantly and positively related to ecosystems with better ecological status. Key factors that point to success in delivering fisheries and conservation objectives were as follows: the use of reference points for management, frequent review of stock assessments, whether Illegal, Unreported and Unregulated (IUU) catches were being accounted for and addressed, and the inclusion of stakeholders. Additionally, we found that the implementation of a long-term management plan, including economic and social dimensions of fisheries in exploited ecosystems, was a key factor in successful, sustainable fisheries management. Our results support the thesis that good ecosystem-based management and governance, sustainable fisheries and healthy ecosystems go together.

Résumé: With the ongoing loss of coral cover and the associated flattening of reef architecture, understanding the links between coral habitat and reef fishes is of critical importance. Here, we investigate whether considering coral traits and functional diversity provides new insights into the relationship between structural complexity and reef fish communities, and whether coral traits and community composition can predict structural complexity. Across 157 sites in Seychelles, Maldives, the Chagos Archipelago, and Australia's Great Barrier Reef, we find that structural complexity and reef zone are the strongest and most consistent predictors of reef fish abundance, biomass, species richness, and trophic structure. However, coral traits, diversity, and life histories provided additional predictive power for models of reef fish assemblages, and were key drivers of structural complexity. Our findings highlight that reef complexity relies on living corals-with different traits and life histories-continuing to build carbonate skeletons, and that these nuanced relationships between coral assemblages and habitat complexity can affect the structure of reef fish assemblages. Seascape-level estimates of structural complexity are rapid and cost effective with important implications for the structure and function of fish assemblages, and should be incorporated into monitoring programs.

Résumé: Fishmeal and fish oil are largely used as input to several animal feed industries all around the world, but there is a lack of life cycle assessments (LCAs) on Peruvian fishmeal plants, despite their predominance in the global supply. LCAs where performed on three different types of Peruvian fishmeal plants with the objective of comparing them and suggesting ways of limiting their impacts. The LCA results can be nested into LCAs of animal feed. Two system boundaries were used: one including the fishery and another excluding it in order to enable other practitioners to use our generic life cycle inventory (LCI) data and LCI analysis. The effects of different processing rates and qualities of fishmeal on environmental impacts were compared. We used the SimaPro software, the ecoinvent 2.2 database and the ReCiPe method. In contrast to many LCA studies, the construction and maintenance phases were considered. Despite the predominant impact of the use phase, in particular consumption of fossil energy, these two phases contribute significantly (>10% using the ReCiPe single score) when fishing is excluded from the system boundaries. Furthermore, existing screening LCAs of the use phase largely underestimate (∼20%) its environmental impacts. The environmental benefit of using natural gas instead of heavy fuel as energy source, in terms of reduced impacts, is huge, reaching 41% of the ReCiPe single score when fishing is excluded and 30% when included. The comparison of environmental impacts between different qualities of fishmeal shows higher impacts of residual fishmeal, intermediate impact of standard fishmeal and lower impacts of Prime fishmeal, the difference between extreme values being more than twofold. Future studies on other fishmeal and residual fishmeal plants should take into account the construction and maintenance phases, and more items in the use phase than in historical screenings. There is room to decrease the environmental impact of this industry in Peru.

Résumé: Cephalopod assemblages at the scale of the entire Mediterranean Sea were analysed using information from 2 decades of standardized scientific bottom trawl surveys. Western and eastern assemblages (6 yr of data) were compared using a combined approach of multivariate ordination techniques and non-linear regressions. These methods enabled us to distinguish assemblages and simultaneously analyse the influence of geographic, bathymetric and environmental (sea surface temperature and chlorophyll a concentration) gradients on observed community patterns. Despite few differences in species composition between sub-basins, the relative contribution of species differed. Bathymetry was the primary structural driver for the cephalopod communities of both basins, and contributed to 3 assemblages (shallow water, upper slope and middle slope). Winter temperature influenced community assemblages more strongly in the western than in the eastern basin, in contrast to a small but consistent winter productivity influence on community assemblages in both basins. Thus, the environmental parameters analysed did not cause an immediate change in cephalopod assemblages, but rather an effect lagged by several months. Differences in the relative importance of environmental drivers show that different processes operate in the 2 basins. These results demonstrate similarities and differences between Mediterranean basins regarding important cephalopod functional groups. This information should help integrative ecosystem management approaches currently used in fisheries and conservation management.

Résumé: There is an urgent need for developing policy-relevant future scenarios of biodiversity and ecosystem services. This paper is a milestone toward this aim focusing on open ocean fisheries. We develop five contrasting Oceanic System Pathways (OSPs), based on the existing five archetypal worlds of Shared Socioeconomic Pathways (SSPs) developed for climate change research (e.g., Nakicenovic et al., 2014 and Riahi et al., 2016). First, we specify the boundaries of the oceanic social-ecological system under focus. Second, the two major driving forces of oceanic social-ecological systems are identified in each of three domains, viz., economy, management and governance. For each OSP (OSP1 “sustainability first”, OSP2 “conventional trends”, OSP3 “dislocation”, OSP4 “global elite and inequality”, OSP5 “high tech and market”), a storyline is outlined describing the evolution of the driving forces with the corresponding SSP. Finally, we compare the different pathways of oceanic social-ecological systems by projecting them in the two-dimensional spaces defined by the driving forces, in each of the economy, management and governance domains. We expect that the OSPs will serve as a common basis for future model-based scenario studies in the context of the Intergovernmental Panel on Climate Change (IPCC) and the Intergovernmental Platform on Biodiversity and Ecosystem Services (IPBES).

Résumé: Trophic models are key tools to go beyond the single-species approaches used in stock assessments to adopt a more holistic view and implement the Ecosystem Approach to Fisheries Management (EAFM). This study aims to: (i) analyse the trophic functioning of the Celtic Sea and the Bay of Biscay, (ii) investigate ecosystem changes over the 1980–2013 period and, (iii) explore the response to management measures at the food web scale. Ecopath models were built for each ecosystem for years 1980 and 2013, and Ecosim models were fitted to time series data of biomass and catches. EcoTroph diagnosis showed that in both ecosystems, fishing pressure focuses on high trophic levels (TLs) and, to a lesser extent, on intermediate TLs. However, the interplay between local environmental conditions, species composition and ecosystem functioning could explain the different responses to fisheries management observed between these two contiguous ecosystems. Indeed, over the study period, the ecosystem's exploitation status has improved in the Bay of Biscay but not in the Celtic Sea. This improvement does not seem to be sufficient to achieve the objectives of an EAFM, as high trophic levels were still overexploited in 2013 and simulations conducted with Ecosim in the Bay of Biscay indicate that at current fishing effort the biomass will not be rebuilt by 2030. The ecosystem's response to a reduction in fishing mortality depends on which trophic levels receive protection. Reducing fishing mortality on pelagic fish, instead of on demersal fish, appears more efficient at maximising catch and total biomass and at conserving both top-predator and intermediate TLs. Such advice-oriented trophic models should be used on a regular basis to monitor the health status of marine food webs and analyse the trade-offs between multiple objectives in an ecosystem-based fisheries management context.

Résumé: Commercial tunas and billfishes (swordfish, marlins and sailfish) provide considerable catches and income in both developed and developing countries. These stocks vary in status from lightly exploited to rebuilding to severely depleted. Previous studies suggested that this variability could result from differences in life-history characteristics and economic incentives, but differences in exploitation histories and management measures also have a strong effect on current stock status. Although the status (biomass and fishing mortality rate) of major tuna and billfish stocks is well documented, the effect of these diverse factors on current stock status and the effect of management measures in rebuilding stocks have not been analysed at the global level. Here, we show that, particularly for tunas, stocks were more depleted if they had high commercial value, were long-lived species, had small pre-fishing biomass and were subject to intense fishing pressure for a long time. In addition, implementing and enforcing total allowable catches (TACs) had the strongest positive influence on rebuilding overfished tuna and billfish stocks. Other control rules such as minimum size regulations or seasonal closures were also important in reducing fishing pressure, but stocks under TAC implementations showed the fastest increase of biomass. Lessons learned from this study can be applied in managing large industrial fisheries around the world. In particular, tuna regional fisheries management organizations should consider the relative effectiveness of management measures observed in this study for rebuilding depleted large pelagic stocks.

Résumé: The failure to achieve fisheries management objectives has been broadly discussed in international meetings. Measuring the effects of fishery regulations is difficult due to the lack of detailed information. The yellowfin tuna fishery in the eastern Pacific Ocean offers an opportunity to evaluate the fishers' responses to temporal regulations. We used data from observers on-board Mexican purse-seine fleet, which is the main fleet fishing on dolphin-associated tuna schools. In 2002, the Inter-American Tropical Tuna Commission implemented a closed season to reduce fishing effort for this fishery. For the period 1992-2008, we analysed three fishery indicators using generalized estimating equations to evaluate the fishers' response to the closure. We found that purse-seiners decreased their time spent in port, increased their fishing sets, and maintained their proportion of successful fishing sets. Our results highlight the relevance of accounting for the fisher behaviour to understand fisheries dynamics when establishing management regulations.

Résumé: In this introductory paper we highlight key questions that were discussed during the symposium on “Status, functioning and shifts in marine ecosystems” organized by the Association Francaise d'Halieutique (French Association for Fisheries Sciences, Montpellier, France, July 2015). This symposium illustrated that fisheries science is now working at multiple scales and on all dimensions of socio-ecosystems (ecological, political, sociological, and economic), with a great diversity of approaches and taking into account different levels of complexity while acknowledging diverse sources of uncertainty. We argue that we should go one step further and call for a protean fisheries science to address the deteriorated states of aquatic ecosystems caused by anthropogenic pressures. Protean science is constantly evolving to meet emerging issues, while improving its coherence and integration capacity in its complexity. This science must be nourished by multiple approaches and be capable of addressing all organizational scales, from individual fish or fishermen up to the entire ecosystem, include society, its economy and the services it derives from aquatic systems. Such a protean science is required to address the complexity of ecosystem functioning and of the impacts of anthropogenic pressures.

Résumé: Time-area regulations have been introduced to manage stocks of tropical tuna, given the increased use of drifting fish aggregation devices (FADs). However, the consequences in terms of changes in fishing strategies and effort reallocation may not always be as expected. For instance, in the eastern Pacific Ocean, previous studies have highlighted that the increase use of FAD-fishing following the demand for tuna caught without dolphin mortality has raised concerns about the bycatch and the capture of juvenile tuna. In the tropical eastern Atlantic and western Indian Oceans, this study aimed to (1) assess, using before-after analysis, the consequences of previous time-area regulations on FAD sets on the fishing effort allocated to megafauna associated sets, and (2) evaluate through Monte Carlo simulations the potential effect of new regulations banning whale or/and whale shark associated sets. Firstly, we showed that previous time-area regulations, which were mainly implemented during seasons with few whale and whale shark associated sets, generally had thus little effect on the number of megafauna associated sets. Secondly, some simulations, particularly when both whale and whale shark associated sets were banned, predicted consequences of changes in fishing strategy. Indeed, these types of ban could lead to an increase in the number of FAD and free school sets but no change in the tuna catch, as well as a slight decrease in bycatch. These results indicate that an ecosystem approach to fisheries, by taking into account megafauna associated sets and bycatch, should thus be adopted when implementing management or conservation measures.

Résumé: Periodically harvested closures (PHCs) are small fisheries closures with objectives such as sustaining fisheries and conserving biodiversity and have become one of the most common forms of nearshore marine management in the Western Pacific. Although PHCs can provide both short-term conservation and fisheries benefits, their potential as a long-term management strategy remains unclear. Through empirical assessment of a single harvest event in each of five PHCs, we determined whether targeted fishes that differ in their vulnerability to fishing recovered to pre-harvest conditions (the state prior to last harvest) and demonstrated post-harvest recovery benefits after 1 year of re-closure. For low and moderately vulnerable species, two PHCs provided significant pre-harvest benefits and one provided significant post-harvest recovery benefits, suggesting a contribution to longer-term sustainability. PHCs with a combination of high compliance and longer closing times are more likely to provide fisheries benefits and recover from harvest events, however, no benefits were observed across any PHCs for highly vulnerable species. We recommend PHCs have longer closure periods before being harvested and species that are highly vulnerable to fishing (e.g. large species of; grouper, wrasse and parrotfish) are avoided during harvests to avoid overexploitation and increase the sustainability of small-scale fisheries. (C) 2016 Elsevier Ltd. All rights reserved.

Résumé: The opportunities for operators to increase their revenue when illegal, unreported and unregulated (IUU) fishing catches are converted to currency through the market encourage the persistence and growth of this activity. It is often the same market that is targeted for the legal trade of fish. Thus, paradoxically, the market demand creates and incites it, at least from an economic point of view. To deter IUU fishing activities, some fish and fishery products importing countries have started to enact or implement additional regulatory measures, the goal of which is to tackle the problem from a new trade-related perspective. This contribution provides an analysis of various aspects of the market state competence. Within the framework of the European Union (rights and markets) the study analyses the emergence of regional trade-related measures and explore how they are linked to the international trade law regime especially the World Trade Organization rules. Finally, the paper draws implications for the market state measures and considers their limits and potential in combatting IUU fishing. (C) 2015 Elsevier Ltd. All rights reserved.

Résumé: The depletion of natural resources has become a major issue in many parts of the world, with the most accessible resources being most at risk. In the terrestrial realm, resource depletion has classically been related to accessibility through road networks. In contrast, in the marine realm, the impact on living resources is often framed into the Malthusian theory of human density around ecosystems. Here, we develop a new framework to estimate the accessibility of global coral reefs using potential travel time from the nearest human settlement or market. We show that 58% of coral reefs are located <30min from the nearest human settlement. We use a case study from New Caledonia to demonstrate that travel time from the market is a strong predictor of fish biomass on coral reefs. We also highlight a relative deficit of protection on coral reef areas near people, with disproportional protection on reefs far from people. This suggests that conservation efforts are targeting low-conflict reefs or places that may already be receiving de facto protection due to their isolation. Our global assessment of accessibility in the marine realm is a critical step to better understand the interplay between humans and resources.

Résumé: Although coral reefs support the largest concentrations of marine biodiversity worldwide, the extent to which the global system of marine-protected areas (MPAs) represents individual species and the breadth of evolutionary history across the Tree of Life has never been quantified. Here we show that only 5.7% of scleractinian coral species and 21.7% of labrid fish species reach the minimum protection target of 10% of their geographic ranges within MPAs. We also estimate that the current global MPA system secures only 1.7% of the Tree of Life for corals, and 17.6% for fishes. Regionally, the Atlantic and Eastern Pacific show the greatest deficit of protection for corals while for fishes this deficit is located primarily in the Western Indian Ocean and in the Central Pacific. Our results call for a global coordinated expansion of current conservation efforts to fully secure the Tree of Life on coral reefs.

Résumé: In spite of its pivotal role in future implementations of the Ecosystem Approach to Fisheries Management, current knowledge about tuna habitat preferences remains fragmented and heterogeneous, because it relies mainly on regional or local studies that have used a variety of approaches making them difficult to combine. Therefore in this study we analyse data from six tuna species in the Pacific, Atlantic and Indian Oceans in order to provide a global, comparative perspective of habitat preferences. These data are longline catch per unit effort from 1958 to2007 for albacore, Atlantic bluefin, southern bluefin, bigeye, yellowfin and skipjack tunas. Both quotient analysis and Generalized Additive Models were used to determine habitat preference with respect to eight biotic and abiotic variables. Results confirmed that, compared to temperate tunas, tropical tunas prefer warm, anoxic, stratified waters. Atlantic and southern bluefin tuna prefer higher concentrations of chlorophyll than the rest. The two species also tolerate most extreme sea surface height anomalies and highest mixed layer depths. In general, Atlantic bluefin tuna tolerates the widest range of environmental conditions. An assessment of the most important variables determining fish habitat is also provided.

Résumé: The Indian Ocean Tuna Tagging Program provided a unique opportunity to collect demographic data on the key commercially targeted tropical tuna species in the Indian Ocean. In this paper, we focused on estimating growth rates for one of these species, yellowfin (Thunnus albacares). Whilst most growth studies only draw on one data source, in this study we use a range of data sources: individual growth rates derived from yellowfin that were tagged and recaptured, direct age estimates obtained through otolith readings, and length-frequency data collected from the purse seine fishery between 2000 and 2010. To combine these data sources, we used an integrated Bayesian model that allowed us to account for the process and measurement errors associated with each data set. Our results indicate that the gradual addition of each data type improved the model's parameter estimations. The Bayesian framework was useful, as it allowed us to account for uncertainties associated with age estimates and to provide additional information on some parameters (e.g., asymptotic length). Our results support the existence of a complex growth pattern for Indian Ocean yellowfin, with two distinct growth phases between the immature and mature life stages. Such complex growth patterns, however, require additional information on absolute age of fish and transition rates between growth stanzas. This type of information is not available from the data. We suggest that bioenergetic models may address this current data gap. This modeling approach explicitly considers the allocation of metabolic energy in tuna and may offer a way to understand the underlying mechanisms that drive the observed growth patterns.

Résumé: Understanding how external pressures impact ecosystem structure and functioning is essential for ecosystem-based approaches to fisheries management. We quantified the relative effects of fisheries exploitation and environmental conditions on ecological indicators derived from two different data sources, fisheries catch data (catch-based) and fisheries independent survey data (survey-based) for 12 marine ecosystems using a partial least squares path modeling approach (PLS-PM). We linked these ecological indicators to the total biomass of the ecosystem. Although the effects of exploitation and environmental conditions differed across the ecosystems, some general results can be drawn from the comparative approach. Interestingly, the PLS-PM analyses showed that survey-based indicators were less tightly associated with each other than the catch-based ones. The analyses also showed that the effects of environmental conditions on the ecological indicators were predominantly significant, and tended to be negative, suggesting that in the recent period, indicators accounted for changes in environmental conditions and the changes were more likely to be adverse. Total biomass was associated with fisheries exploitation and environmental conditions; however its association with the ecological indicators was weak across the ecosystems. Knowledge of the relative influence of exploitation and environmental pressures on the dynamics within exploited ecosystems will help us to move towards ecosystem-based approaches to fisheries management. PLS-PM proved to be a useful approach to quantify the relative effects of fisheries exploitation and environmental conditions and suggest it could be used more widely in fisheries oceanography.

Résumé: Recently, declining populations of several pelagic shark species have led to global conservation concerns surrounding this group. As a result, a series of species-specific banning measures have been implemented by Regional Fishery Management Organizations (RFMOs) in charge of tuna fisheries, which include retention bans, finning bans and trading bans. There are both positive and negative aspects to most management measures, but generally, the positive aspects outweigh the negatives, ensuring the measure is beneficial to the resource and its users in the long term. Banning measures are a good first step towards the conservation of pelagic shark species, especially since they improve conservation awareness among fishers, managers and the public. Measures that impose total bans, however, can lead to negative impacts that may jeopardize the populations they were intended to protect. The majority of pelagic shark catches are incidental and most sharks die before they reach the vessel or after they are released. The legislation set out by RFMOs only prevents retention but not the actual capture or the mortality that may occur as a result. Managers should be fully aware that the development and implementation of mitigation measures are critical for a more effective conservation strategy.

Résumé: Peru is the top exporter of fishmeal and fish oil (FMFO) worldwide and is responsible for half and a third of global production, respectively. Landings of “anchoveta” (Engraulis ringens) are used nearly exclusively for FMFO production, despite a proactive national food policy aimed at favoring the direct human consumption of this inexpensive species. It may be surprising that in a country where malnutrition and caloric deficit constitute major issues, a low-priced and highly nutritious fish such as anchovy does not have stronger domestic demand as a food fish. Here, we review and assess eight potential politico-socio-economic processes that can explain this situation. The main explanation are dietary habits, the preference for broiler and the higher profit from anchovy sold as feed fish compared to its use as a food fish due to historically high FMFO prices, boosted by an increasing demand for aquaculture in a context of finite forage and trash fish resources. In addition, the recent introduction of an individual quota system has shifted bargaining power from processors to fishers, thereby increasing competition for the raw material. This competition results in an increase in anchovy prices offered by the feed fish industry due to its onshore processing overcapacity, which is detrimental to the food fish industry. In the end, although the dominant use of anchovy for fish feed is largely explained by integrating these market mechanisms and other minor ones, this use raises other issues, such as rent redistribution through public policies, employment, equitability and utility (low social costs), and resource management (threats to ecosystems or global change). Different policy scenarios are proposed in relation to these issues.

Résumé: Effective use of spatial management in the pelagic realm presents special challenges due to high fish and fisher mobility, limited knowledge and significant governance challenges. The tropical Indian Ocean provides an ideal case study for testing our ability to apply existing data sources to assessing impacts of spatial management on tuna fisheries because of several recent controversial spatial closures. We review the scientific underpinnings of pelagic MPA effects, spatio-temporal patterns of Indian Ocean tuna catch, by catch and fish movements, and the consequences of these for the efficacy of spatial management for Indian Ocean tropical tuna fisheries. The tropical Indian Ocean is characterized by strong environmental fluctuations, regular seasonal variability in catch, large observed tuna displacement distances, relatively uniform catch-per-unit-effort and bycatch rates over space, and high fisher mobility, all of which suggest significant variability and movement in tropical tuna fisheries that are simply not well adapted to static spatial closures. One possible exception to this overall conclusion would be a large time/area closure east of Somalia. If closed for a significant fraction of the year it could reduce purse-seine bycatch and juvenile tuna catch. Dynamic closures following fish migratory patterns are possible, but more focused information on fish movements will be needed for effective implementation. Fortunately, several recent improvements in conventional fishery management and reporting will likely enhance our ability to evaluate spatial and non-spatial management options in the near future, particularly as pertaining to bycatch species.

Résumé: The impact of anthropogenic activity on ecosystems has highlighted the need to move beyond the biogeographical delineation of species richness patterns to understanding the vulnerability of species assemblages, including the functional components that are linked to the processes they support. We developed a decision theory framework to quantitatively assess the global taxonomic and functional vulnerability of fish assemblages on tropical reefs using a combination of sensitivity to species loss, exposure to threats and extent of protection. Fish assemblages with high taxonomic and functional sensitivity are often exposed to threats but are largely missed by the global network of marine protected areas. We found that areas of high species richness spatially mismatch areas of high taxonomic and functional vulnerability. Nevertheless, there is strong spatial match between taxonomic and functional vulnerabilities suggesting a potential win-win conservation-ecosystem service strategy if more protection is set in these locations.

Résumé: Overfishing and environmental change have triggered many severe and unexpected consequences. As existing communities have collapsed, new ones have become established, fundamentally transforming ecosystems to those that are often less productive for fisheries, more prone to cycles of booms and busts, and thus less manageable. We contend that the failure of fisheries science and management to anticipate these transformations results from a lack of appreciation for the nature, strength, complexity, and outcome of species interactions. Ecologists have come to understand that networks of interacting species exhibit nonlinear dynamics and feedback loops that can produce sudden and unexpected shifts. We argue that fisheries science and management must follow this lead by developing a sharper focus on species interactions and how disrupting these interactions can push ecosystems in which fisheries are embedded past their tipping points.

Résumé: Assessment of open-ocean ecosystems relies on understanding ecosystem dynamics, and development of end-to-end ecosystem models represents an approach that addresses these challenges. These models incorporate the population structure and dynamics of marine organisms at all trophic levels. Satellite remote sensing of ocean colour and direct at-sea measurements provide information on the lower trophic levels of the models, and fisheries studies provide information on top predator species. However, these models suffer from a lack of observations for the so-called mid-trophic levels, which are poorly sampled by conventional methods. This restricts further development, and we argue that acoustic observations from a range of platforms (e.g. buoys, moorings) can be linked to the ecosystem models to provide much-needed information on these trophic levels. To achieve this, the models need to be tailored to incorporate the available acoustic data, and the link from acoustic backscatter to biologically relevant variables (biomass, carbon, etc.) needs attention. Methods to progress this issue are proposed, including the development of observation models and focal areas for ground truthing. To ensure full use of the potential of acoustic techniques, we argue that a systematic and long-term strategy incorporating the following elements is required: development of metadata standards and automated data analysis, inclusion of acoustic sensors in large-scale observatory programmes, improvement of observation-model links, and efficient sampling strategies. Finally, these elements should be tied together in an observation-modelling framework, coordinated by international organizations, to improve our understanding and quantificati