2021 |
Chassot, E., et al. "Fuel consumption and air emissions in one of the world’s largest commercial fisheries." Environmental Pollution (2021): 116454.
Résumé: The little information available on fuel consumption and emissions by high seas tuna fisheries indicates that the global tuna fleet may have consumed about 2.5 Mt of fuel in 2009, resulting in the production of about 9 Mt of CO2-equivalent greenhouse gases (GHGs), i.e., about 4.5-5% of the global fishing fleet emissions. We developed a model of annual fuel consumption for the large-scale purse seiners operating in the western Indian Ocean as a function of fishing effort, strategy, and vessel characteristics based on an original and unique data set of more than 4,300 bunkering operations that spanned the period 2013-2019. We used the model to estimate the total fuel consumption and associated GHG and SO2 emissions of the Indian Ocean purse seine fishery between 1981 and 2019. Our results showed that the energetic performance of this fishery was characterized by strong interannual variability over the last four decades. This resulted from a combination of variations in tuna abundance but also changes in catchability and fishing strategy. In recent years, the increased targeting of schools associated with fish aggregating devices in response to market incentives combined with the IOTC management measure implemented to rebuild the stock of yellowfin tuna has strongly modified the productivity and spatio-temporal patterns of purse seine fishing. This had effects on fuel consumption and air pollutant emissions. Over the period 2015 to 2019, the purse seine fishery, including its support vessel component, annually consumed about 160,000 t of fuel and emitted 590,000 t of CO2-eq GHG. Furthermore, our results showed that air pollutant emissions can be significantly reduced when limits in fuel composition are imposed. In 2015, SO2 air pollution exceeded 1,500 t, but successive implementation of sulphur limits in the Indian Ocean purse seine fishery in 2016 and 2018 have almost eliminated this pollution. Our findings highlight the need for a routine monitoring of fuel consumption with standardized methods to better assess the determinants of fuel consumption in fisheries and the air pollutants they emit in the atmosphere.
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Goikoetxea, A., et al. "Genetic pathways underpinning hormonal stress responses in fish exposed to short- and long-term warm ocean temperatures." Ecological Indicators. 120 (2021): 106937.
Résumé: Changes in ocean water temperature associated with global climate change are bound to enormously affect fish populations, with potential major economic consequences in the aquaculture and fisheries industries. A link between temperature fluctuations and changes in fish stress response is well established. In this study, we aimed to assess the effects of a short- (4 days) or a long-term (4 months) exposure to warm temperature in the stress physiology of European sea bass (Dicentrarchus labrax) larvae and juveniles. First, cortisol (i.e. the main stress hormone in fishes) analysis was used to confirm that a steady and short-term elevation of temperature acts as a physiological stressful event in these fish, and cortisol release is indeed above a metabolic increase linked to temperature. Moreover, our results verified that measurement of cortisol released into the water can be reliably employed as a non-invasive indicator of acute thermal stress in experimental conditions. Secondly, the different effects on the genetic cascade underlying the stress response between long-term low or high thermal treatments were evaluated at two larval development stages via candidate-gene and whole-transcriptome approaches. Interestingly, opposite expression for some key stress genes (nr3c1, nr3c2 and hsd11b2) were observed between developmental stages, highlighting the distinct adaptive mechanisms controlling the primary and secondary responses to a stressor. Surprising expression patterns for some understudied genes involved in the stress axis were also revealed, including crhr1, mc2r, mc5r, trh or trhr, which should be further explored. Finally, evaluation of cortisol content in scales was successfully used as a biomarker of chronic thermal stress, with 10x more cortisol in fish kept at 21 °C vs 16 °C after 4 months, supporting the gene expression results observed. The use of such a method as a proxy of long-term stress, unprecedented in the literature, holds a vast array of applications in further research, in particular, in the investigation of the impact of global warming on wild fish populations.
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Griot, R., et al. "Genome-wide association studies for resistance to viral nervous necrosis in three populations of European sea bass (Dicentrarchus labrax) using a novel 57k SNP array DlabChip." Aquaculture. 530 (2021): 735930.
Résumé: Viral Nervous Necrosis (VNN) is a major threat for the European sea bass (Dicentrarchus labrax) aquaculture industry. The improvement of disease resistance through selective breeding is a promising option to reduce outbreaks. With the development of high-throughput genotyping technologies, identification of genomic regions involved in the resistance could improve the efficiency of selective breeding. The aim of this study was to identify quantitative trait loci (QTL) involved in VNN resistance and to quantify their effect. Four experimental backcross families comprising 378, 454, 291 and 211 individuals and two commercial populations A and B comprising 1027 and 1042 individuals obtained from partial factorial crosses (59♂ x 20♀ for pop A; 39♂ x 14♀ for pop B) were submitted to a redspotted grouper nervous necrosis virus (RGNNV) challenge by bath. A high-density single nucleotide polymorphism (SNP) chip panel was designed to develop the ThermoFisher Axiom™ 57k SNP DlabChip, which was used for genotyping all individuals and building a high quality linkage map. In the backcross families, composite interval mapping was performed on 30,917, 23,592, 30,656 and 31,490 markers, respectively. In the commercial populations, 40,263 markers in pop A and 41,166 markers in pop B were used to perform genome-wide association studies (GWAS) using a GBLUP and a BayesCπ approach. One QTL was identified on chromosome LG12 in three of the four experimental backcross families, and one additional QTL on LG8 was detected in only one family. In commercial populations, QTL mapping revealed a total of seven QTLs, among which the previously mentioned QTL on LG12 was detected in both. This QTL, which was mapped to an interval of 3.45 cM, explained 9.21% of the total genetic variance in pop A, while other identified QTLs individually explained less than 1% of the total genetic variance. The identification of QTL regions involved in VNN resistance in European sea bass, with one having a strong effect, should have a great impact on the aquaculture industry. Future work could focus on the fine mapping of the causal mutation present on LG12 using whole genome sequencing.
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Guillotreau, P., et al. "The vulnerability of shellfish farmers to HAB events: An optimal matching analysis of closure decrees." Harmful Algae. 101 (2021): 101968.
Résumé: Harmful Algal Blooms (HAB) events may have serious economic consequences for shellfish farmers. When toxic algae blooms threaten human health, public authorities may decide to shut down the farming business for a while, i.e. ranging from a few days to several weeks or months, according to the severity of risks. The impact of closures being temporally and spatially distributed, shellfish farmers can avoid the risky zones or develop adaptive strategies to mitigate the economic consequences and therefore reduce significantly their business sensitivity to HABs. A sequential approach by optimal matching analysis is applied to an original data set of shellfish area closure decrees between April 2004 and December 2018 in Southern Brittany and Pays de la Loire (France) to build a typology of 79 aquaculture zones affected by various HAB and microbiological hazards (ASP, DSP, Norovirus, E. Coli, oil spills). The hypothesis is that the degree of exposure to the HAB hazard assessed by zonal closures may not be correlated to the level of sensitivity revealed by the economic results of the shellfish farming industry which can develop avoidance strategies.
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Maureaud, A., et al. "Are we ready to track climate-driven shifts in marine species across international boundaries? – A global survey of scientific bottom trawl data." Global Change Biology. 27.2 (2021): 220–236.
Résumé: Marine biota are redistributing at a rapid pace in response to climate change and shifting seascapes. While changes in fish populations and community structure threaten the sustainability of fisheries, our capacity to adapt by tracking and projecting marine species remains a challenge due to data discontinuities in biological observations, lack of data availability, and mismatch between data and real species distributions. To assess the extent of this challenge, we review the global status and accessibility of ongoing scientific bottom trawl surveys. In total, we gathered metadata for 283,925 samples from 95 surveys conducted regularly from 2001 to 2019. We identified that 59% of the metadata collected are not publicly available, highlighting that the availability of data is the most important challenge to assess species redistributions under global climate change. Given that the primary purpose of surveys is to provide independent data to inform stock assessment of commercially important populations, we further highlight that single surveys do not cover the full range of the main commercial demersal fish species. An average of 18 surveys is needed to cover at least 50% of species ranges, demonstrating the importance of combining multiple surveys to evaluate species range shifts. We assess the potential for combining surveys to track transboundary species redistributions and show that differences in sampling schemes and inconsistency in sampling can be overcome with spatio-temporal modeling to follow species density redistributions. In light of our global assessment, we establish a framework for improving the management and conservation of transboundary and migrating marine demersal species. We provide directions to improve data availability and encourage countries to share survey data, to assess species vulnerabilities, and to support management adaptation in a time of climate-driven ocean changes.
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2020 |
Alfonso, S., M. Gesto, and B. Sadoul. "Temperature increase and its effects on fish stress physiology in the context of global warming." J. Fish Biol. (2020).
Résumé: The capacity of fishes to cope with environmental variation is considered to be a main determinant of their fitness and is partly determined by their stress physiology. By 2100, global ocean temperature is expected to rise by 1-4 degrees C, with potential consequences for stress physiology. Global warming is affecting animal populations worldwide through chronic temperature increases and an increase in the frequency of extreme heatwave events. As ectotherms, fishes are expected to be particularly vulnerable to global warming. Although little information is available about the effects of global warming on stress physiology in nature, multiple studies describe the consequences of temperature increases on stress physiology in controlled laboratory conditions, providing insight into what can be expected in the wild. Chronic temperature increase constitutes a physiological load that can alter the ability of fishes to cope with additional stressors, which might compromise their fitness. In addition, rapid temperature increases are known to induce acute stress responses in fishes and might be of ecological relevance in particular situations. This review summarizes knowledge about effects of temperature increases on the stress physiology of fishes and discusses these in the context of global warming.
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Alfonso, S., et al. "Zebrafish Danio rerio shows behavioural cross-context consistency at larval and juvenile stages but no consistency between stages." J. Fish Biol. (2020).
Résumé: Coping style is defined as a set of individual physiological and behavioural characteristics that are consistent across time and context. In the zebrafish Danio rerio, as well as in many other animals, several covariations have been established among behavioural, physiological and molecular responses. Nonetheless, not many studies have addressed the consistency in behavioural responses over time starting at the larval stage. Therefore, this study aimed to improve the understanding of behavioural consistency across contexts and over time in zebrafish from the larval to juvenile stages. Two distinct experiments were conducted: a larval stage experiment (from 8 to 21 days post fertilization, dpf) and a juvenile stage experiment (from 21 to 60 dpf). On one hand, the larval experiment allows to focus on the transition between 8 and 21 dpf, marked by significant morphological changes related to the end of larval stage and initiation of metamorphosis. On the other hand, the juvenile experiment allows to properly cover the period extending from the end of larval stage to the juvenile stage (60 dpf), including metamorphosis which is itself completed around 45 dpf. Within each experiment, boldness was determined using a group risk-taking test to identify bold and shy individuals. A novel environment test was then performed at the same age to evaluate consistency across contexts. Groups of fish (either bold or shy) were bathed in an alizarin red S solution for later identification of their initially determined coping style to evaluate behavioural consistency over time. Fish were then reared under common garden conditions and challenged again with the same behavioural tests at a later age (21 and 60 dpf in the larval and juvenile experiments, respectively). Behavioural consistency was observed across contexts, with bold fish being more active and expressing higher thigmotaxis regardless of age. There was, however, little behavioural consistency over age, suggesting behavioural plasticity during development. Moreover, the use of alizarin red S to conduct this experiment provides new perspectives for the further study of the longitudinal evolution of various traits, including behaviour, over life stages in fish.
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Alfonso, S., et al. "Spatial distribution and activity patterns as welfare indicators in response to water quality changes in European sea bass, Dicentrarchus labrax." Appl. Anim. Behav. Sci.. 226 (2020): Unsp-104974.
Résumé: In aquaculture, fish are exposed to unavoidable stressors that can be detrimental for their health and welfare. However, welfare in farmed fish can be difficult to assess, and, so far, no standardized test has been universally accepted as a welfare indicator. This work contributes to the establishment of behavioural welfare indicators in a marine teleost in response to different water quality acute stressors. Groups of ten fish were exposed to high Total Ammonia Nitrogen concentration (High TAN, 18 mg.L-1), Hyperoxia (200 % O-2 saturation), Hypoxia (20 % O-2 saturation), or control water quality (100% O-2 saturation and TAN < 2.5 mg.L-1) over 1 hour. Fish were then transferred in a novel environment for a group behaviour test under the same water quality conditions over 2 hours. Videos were recorded to assess thigmotaxis, activity and group cohesion. After this challenge, plasma cortisol concentration was measured in a subsample, while individual behavioural response was measured in the other fish using novel tank diving test. Prior to this study, the novel tank diving test was validated as a behavioural challenge indicative of anxiety state, by using nicotine as anxiolytic drug. Overall, all stress conditions induced a decrease in activity and thigmotaxis and changes in group cohesion while only fish exposed to Hypoxia and High TAN conditions displayed elevated plasma cortisol concentrations. In post-stress condition, activity was still affected but normal behaviour was recovered within the 25 minutes of the test duration. Our work suggests that the activity, thigmotaxis and group cohesion are good behavioural indicators of exposure to degraded water quality, and could be used as standardized measures to assess fish welfare.
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Amemou, H., et al. "Assessment of a Lagrangian model using trajectories of oceanographic drifters and fishing devices in the Tropical Atlantic Ocean." Prog. Oceanogr.. 188 (2020): 102426.
Résumé: In the Tropical Atlantic Ocean, we assessed the accuracy of a Lagrangian model (Ichthyop) forced with velocity fields from a hydrodynamical model (CROCO) and two different remote sensing products (GlobCurrent and OSCAR) using trajectories of oceanographic drifters. Additionally, we evaluated the possibility to expand the drifters data using trajectories of GPS-buoy equipped drifting Fish Aggregating Devices (FADs). The observed and simulated trajectories were compared in terms of spatial distribution, velocity distribution and a nondimensional skill score. For the drifters and FADs, the GlobCurrent and OSCAR products lead to similar performances as the CROCO model-ouputs in the broad studied domain. In the Gulf of Guinea, however, the CROCO model performed significantly better than the other two because the parent solution of CROCO benefited from its communication with a child grid of finer resolution in this region. On average, the simulations lead to an underestimation of the drifter and FAD velocities, likely because the spatial resolutions of the forcing products were insufficient and the time frequency at which they were produced were too low to resolve the relevant oceanic processes properly. We found a low skill for all models to simulate FAD trajectories, possibly because of the devices vertical structure that prevent FADs from drifting like water parcels. Our results therefore suggest that in the Tropical Atlantic the FAD dataset may not be appropriate to use for corroborating Lagrangian simulations.
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Annasawmy, P., et al. "Stable isotope patterns of mesopelagic communities over two shallow seamounts of the south-western Indian Ocean." Deep-Sea Res. Part II-Top. Stud. Oceanogr.. 176 (2020): 104804.
Résumé: The stable carbon (delta C-13) and nitrogen (delta N-15) isotope values of soft tissues of micronekton (crustaceans, squid, mesopelagic fish) and zooplankton were measured from organisms collected on the RV Antea at two seamounts located in the south-western Indian Ocean: La Perouse (summit depth similar to 60 m) and “MAD-Ridge” (thus named in this study; summit depth similar to 240 m). Surface particulate organic matter (POM-Surf) showed higher delta C-13 at the more productive MAD-Ridge than at the oligotrophic La Perouse seamount. Particulate organic matter and zooplankton were depleted in N-15 at La Pemuse pinnacle compared with MAD-Ridge. Gelatinous organisms and crustaceans occupied the lowest and intermediate tmphic levels (TL similar to 2 and 3 respectively) at both seamounts. Mesopelagic fish and smaller-sized squid sampled at both seamounts occupied TL similar to 3 to 4, whereas the large nektonic squid, Ommastrephes bartramii, collected at MAD-Ridge only, exhibited a TL of similar to 5. The delta N-15 values of common open-water mesopelagic taxa were strongly influenced by specimen size and feeding habits at both seamounts, with an increase in delta N-15 values with increasing size. Carnivorous fish species sampled exclusively over the seamounts' flanks and summits exhibited TL values of similar to 4, irrespective of their wide size ranges. The work could not demonstrate any differences in delta C-13 values of mesopelagic fish between the seamounts and the surrounding oceanic areas. The study segregated clusters of mesopelagic organisms according to their delta C-13 and delta N-15 values, with variations in stable isotope values reflecting a complex range of processes possibly linked to productivity as well as biological and ecological traits of the species (size and feeding mode).
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Annasawmy, P., et al. "Micronekton distribution as influenced by mesoscale eddies, Madagascar shelf and shallow seamounts in the south-western Indian Ocean: an acoustic approach." Deep-Sea Res. Part II-Top. Stud. Oceanogr.. 176 (2020): 104812.
Résumé: An investigation of the vertical and horizontal distributions of micronekton, as influenced by mesoscale eddies, the Madagascar shelf and shallow seamounts, was undertaken using acoustic data collected during two research cruises at an unnamed pinnacle (summit depth similar to 240 m) thereafter named “MAD-Ridge”, and at La Perouse seamount (similar to 60 m) in the south-western Indian Ocean. MAD-Ridge is located to the south of Madagascar, in an “eddy corridor”, known both for its high mesoscale activity and high primary productivity. In contrast, La Perouse is located on the outskirts of the Indian South Subtropical Gyre (ISSG) province, characterised by low mesoscale activity and low primary productivity. During the MAD-Ridge cruise, a dipole was located in the vicinity of the seamount, with the anticyclone being almost stationary on the pinnacle. Total micronekton acoustic densities were greater at MAD-Ridge than at La Perouse. Micronekton acoustic densities of the total water column were lower within the anticyclone than within the cyclone during MAD-Ridge. Micronekton followed the usual diel vertical migration (DVM) pattern, except within the cyclone during MAD-Ridge where greater acoustic densities were recorded in the daytime surface layer. The backscatter intensities were stronger at the 38 kHz than at the 70 and 120 kHz frequencies in the daytime surface layer at MAD-Ridge cyclonic stations. These backscatter intensities likely correspond to gas-filled swimbladders of epi- and mesopelagic fish actively swimming and feeding within the cyclone or gelatinous organisms with gas inclusions. Our findings evidenced that the distributions of micronekton and DVM patterns are complex and are influenced significantly by physical processes within mesoscale eddies. The mesoscale eddies' effects were dominant over any potential seamount effects at the highly dynamic environment prevailing at MAD-Ridge during the cruise. No significant increase in total micronekton acoustic densities was observed over either seamount, but dense aggregations of biological scatterers were observed on their summits during both day and night.
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Arnich, N., et al. "Health risk assessment related to pinnatoxins in French shellfish." Toxicon (2020).
Résumé: Pinnatoxins (PnTXs) are a group of emerging marine biotoxins produced by the benthic dinoflagellate Vulcanodinium rugosum, currently not regulated in Europe or in any other country in the world. In France, PnTXs were detected for the first time in 2011, in mussels from the Ingril lagoon (South of France, Mediterranean coast). Since then, analyses carried out in mussels from this lagoon have shown high concentrations of PnTXs for several months each year. PnTXs have also been detected, to a lesser extent, in mussels from other Mediterranean lagoons and on the Atlantic and Corsican coasts. In the French data, the main analog is PnTX G (low levels of PnTX A are also present in some samples). No cases of PnTXs poisoning in humans have been reported so far in France or anywhere else in the world. In mice, PnTXs induce acute neurotoxic effects, within a few minutes after oral administration. Clinical signs of toxicity include decreased mobility, paralysis of the hind legs, tremors, jumps and breathing difficulties leading to death by respiratory arrest at high doses. The French agency for food safety (ANSES) recently conducted a review of the state of knowledge related to PnTXs and V. rugosum. Based on (i) the clinical signs of toxicity in mice, (ii) the mode of action of PnTXs as nicotinic acetylcholine receptor competitive antagonists and (iii) knowledge on drugs and natural toxins with PnTX-related pharmacology, potential human symptoms have been extrapolated and proposed. In this work, a provisional acute benchmark value for PnTX G of 0.13 μg/kg bw per day has been derived from an oral acute toxicity study in mice. Based on this value and a large shellfish meat portion size of 400g, a concentration lower than 23 μg PnTX G/kg shellfish meat is not expected to result in adverse effects in humans. ANSES recommends taking into account PnTXs in the French official monitoring program for shellfish production and identified data gaps to refine health risk assessment.
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Assali, C., N. Bez, and Y. Tremblay. "Raking the ocean surface: new patterns of coordinated motion in seabirds." J. Avian Biol.. 51.6 (2020).
Résumé: Coordinated movements of seabirds exploiting a prey patch are known to increase prey encounter and capture rates of individuals. These behaviours, based on effective cooperation between seabirds, have only been reported at small scale, i.e. the scale of the prey patch. However, the efficient prey exploitation by seabirds in vast oceans require larger scale processes such as information transfers between individuals. Indeed, information transfers between foraging seabirds (e.g. changes in behaviour) reduce their search cost while increasing their prey encounter rate. Whether or not these information transfer processes imply active cooperation is unknown. Using images from fishing boat radars in the eastern tropical Atlantic, we show the existence of frequent medium-scale patterns of coordinated flights of seabird groups, consisting in seabird fronts ('rake' patterns) of 0.3-4.4 km width, displacing cohesively over 1.2-10.6 km and lasting between 2 and 19 min. For these rakes to be maintained, seabird groups have to adjust their flight speeds and directions, while they are on average distant of 500 m from each other, what cannot occur by chance. These findings suggest the existence of collective and coordinated movements in seabirds during prey searching at several kilometres' scale. This potential cooperation between foraging seabird groups brings new insight in the evolutionary trajectories of seabirds life-style.
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Bachiller, E., et al. "A trophic latitudinal gradient revealed in anchovy and sardine from the Western Mediterranean Sea using a multi-proxy approach." Sci Rep. 10.1 (2020): 17598.
Résumé: This work combines state-of-the-art methods (DNA metabarcoding) with classic approaches (visual stomach content characterization and stable isotope analyses of nitrogen (delta N-15) and carbon (delta C-13)) to investigate the trophic ecology of anchovy (Engraulis encrasicolus) and sardine (Sardina pilchardus) at high taxonomic and spatial resolution in the Western Mediterranean Sea. Gut contents observed are in accordance with the dietary plasticity generally described for anchovy and sardine, suggesting a diet related to the opportunistic ingestion of available prey in a certain area and/or time. Genetic tools also showed modest inter-specific differences regarding ingested species. However, inter-specific and intra-specific differences in ingested prey frequencies and prey biomass reflected a latitudinal signal that could indicate a more effective predation on large prey like krill by anchovy versus sardine, as well as a generalized higher large prey ingestion by both species southwards. In fact, both species presented lower delta N-15 in the northernmost area. This latitudinal gradient indicates changes in the trophic ecology of anchovy and sardine that coincide with previously described better biological conditions for fish in the southern part of the study area as well as higher landings of both species in recent years.
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Baidai, Y., et al. "Machine learning for characterizing tropical tuna aggregations under Drifting Fish Aggregating Devices (DFADs) from commercial echosounder buoys data." Fish Res.. 229 (2020): 105613.
Résumé: The use of echosounder buoys deployed in conjunction with Drifting Fish Aggregating Devices (DFADs) has progressively increased in the tropical tuna purse seine fishery since 2010 as a means of improving fishing efficiency. Given the broad distribution of DFADs, the acoustic data provided by echosounder buoys can provide an alternative to the conventional CPUE index for deriving trends on tropical tuna stocks. This study aims to derive reliable indices of presence of tunas (and abundance) using echosounder buoy data. A novel methodology is presented which utilizes random forest classification to translate the acoustic backscatter from the buoys into metrics of tuna presence and abundance. Training datasets were constructed by cross-referencing acoustic data with logbook and observer data which reported activities on DFADs (tuna catches, new deployments and visits of DFADs) in the Atlantic and Indian Oceans from 2013 to 2018. The analysis showed accuracies of 75 and 85 % for the recognition of the presence/absence of tuna aggregations under DFADs in the Atlantic and Indian Oceans, respectively. The acoustic data recorded at ocean-specific depths (6-45m in the Atlantic and 30-150m in the Indian Ocean) and periods (4 a.m.-4 p.m.) were identified by the algorithm as the most important explanatory variables for detecting the presence of tuna. The classification of size categories of tuna aggregations showed a global accuracy of nearly 50 % for both oceans. This study constitutes a milestone towards the use of echosounder buoys data for scientific purposes, including the development of promising fisheries-independent indices of abundance for tropical tunas.
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Beckensteiner, J., et al. "Drivers and trends in catch of benthic resources in Chilean TURFs and surrounding open access areas." Ocean Coastal Manage.. 183 (2020): 104961.
Résumé: Beginning in the 1990's, Chile implemented an extensive Territorial User Rights for Fisheries (TURFs) network that now comprises nearly 1,000 TURFs. This network provides a rare opportunity to examine spatial and temporal trends in TURF use and impacts on surrounding open access areas (OAAs). In this analysis, landings of keyhole limpet (Fissurella spp.), kelp (Lessonia spp.) and red sea urchin (Loxechinus albus) were used to estimate catch-per-unit effort (CPUEs) and catch-per-unit area (CPUAs) indices inside and outside TURFs by fishing cove. For these species, CPUEs and CPUAs in 2015 were significantly higher inside TURFs. However, temporal trends analyzed with a linear mixed effects model indicate that CPUAs inside TURFs have been significantly decreasing since 2000 for keyhole limpet, red sea urchin and for loco (Concholepas concholepas), while in OAAs this measure only decreased for limpet. An elastic net regression was used to better explain catches in OAAs during 2015, including a variety of variables related to the characteristics and activity of proximal TURFs. Results indicate that exogenous factors unrelated to TURF management were the primary drivers of catches in OAAs during 2015 but that factors related to proximal TURFs appear to have a slight negative impact that grows over time. Collectively, these results indicate that while TURFs are associated with higher catch rates than surrounding OAAs, catch rates appear to be decreasing over time and, though limited, the impact of TURFs on surrounding OAAs may be negative. These findings suggest a need for a more nuanced and dynamic approach to spatial management on benthic resources in Chile.
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Blasco, F. R., et al. "Using aerobic exercise to evaluate sub-lethal tolerance of acute warming in fishes." J. Exp. Biol.. 223.9 (2020): jeb218602.
Résumé: We investigated whether fatigue from sustained aerobic swimming provides a sub-lethal endpoint to define tolerance of acute warming in fishes, as an alternative to loss of equilibrium (LOE) during a critical thermal maximum (CTmax) protocol. Two species were studied, Nile tilapia (Oreochromis niloticus) and pacu (Piaractus mesopotamicus). Each fish underwent an incremental swim test to determine gait transition speed (U-GT), where it first engaged the unsteady anaerobic swimming mode that preceded fatigue. After suitable recovery, each fish was exercised at 85% of their own U-GT and warmed 1 degrees C every 30 min, to identify the temperature at which they fatigued, denoted as CTswim. Fish were also submitted to a standard CTmax, warming at the same rate as CTswim, under static conditions until LOE. All individuals fatigued in CTswim, at a mean temperature approximately 2 degrees C lower than their CTmax. Therefore, if exposed to acute warming in the wild, the ability to perform aerobic metabolic work would be constrained at temperatures significantly below those that directly threatened survival. The collapse in performance at CTswim was preceded by a gait transition qualitatively indistinguishable from that during the incremental swim test. This suggests that fatigue in CTswim was linked to an inability to meet the tissue oxygen demands of exercise plus warming. This is consistent with the oxygen and capacity limited thermal tolerance (OCLTT) hypothesis, regarding the mechanism underlying tolerance of warming in fishes. Overall, fatigue at CTswim provides an ecologically relevant sub-lethal threshold that is more sensitive to extreme events than LOE at CTmax.
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Bonnin, L., et al. "Can drifting objects drive the movements of a vulnerable pelagic shark?" Aquat. Conserv.-Mar. Freshw. Ecosyst. (2020).
Résumé: Juvenile silky sharks (Carcharhinus falciformis)regularly associate with floating objects yet the reasons driving this behaviour remain uncertain. Understanding the proportion of time that silky sharks spend associated with floating objects is essential for assessing the impacts of the extensive use of fish aggregating devices (FADs) in the tropical tuna purse-seine fisheries, including increased probability of incidental capture and the potential of an ecological trap. Previous studies provided insight into the amount of time that silky sharks spent at an individual FAD but were unable to assess neither the time spent between two associations nor the proportion of time spent associated/unassociated. The percentage of time that juvenile silky sharks spend unassociated with floating objects was estimated through the analysis of horizontal movements of 26 silky sharks monitored with pop-up archival tags. Under the assumption that a high association rate with drifting FADs would align the trajectories of tracked sharks with ocean surface currents, a novel methodology is proposed, based on the comparison of shark trajectories with simulated trajectories of passively drifting particles derived using a Lagrangian model. Results revealed that silky shark trajectories were divergent from surface currents, and thus unassociated with FADs, for at least 30% of their time. The potential of the methodology and the results are discussed in the context of increasing FAD densities in the Indian Ocean.
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Boulanger, E., et al. "Spatial graphs highlight how multi-generational dispersal shapes landscape genetic patterns." Ecography (2020).
Résumé: Current approaches that compare spatial genetic structure of a given species and the dispersal of its mobile phase can detect a mismatch between both patterns mainly due to processes acting at different temporal scales. Genetic structure result from gene flow and other evolutionary and demographic processes over many generations, while dispersal predicted from the mobile phase often represents solely one generation on a single time-step. In this study, we present a spatial graph approach to landscape genetics that extends connectivity networks with a stepping-stone model to represent dispersal between suitable habitat patches over multiple generations. We illustrate the approach with the case of the striped red mullet Mullus surmuletus in the Mediterranean Sea. The genetic connectivity of M. surmuletus was not correlate with the estimated dispersal probability over one generation, but with the stepping-stone estimate of larval dispersal, revealing the temporal scale of connectivity across the Mediterranean Sea. Our results highlight the importance of considering multiple generations and different time scales when relating demographic and genetic connectivity. The spatial graph of genetic distances further untangles intra-population genetic structure revealing the Siculo-Tunisian Strait as an important corridor rather than a barrier for gene flow between the Western- and Eastern Mediterranean basins, and identifying Mediterranean islands as important stepping-stones for gene flow between continental populations. Our approach can be easily extended to other systems and environments.
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Campbell, S. J., et al. "Fishing restrictions and remoteness deliver conservation outcomes for Indonesia's coral reef fisheries." Conserv. Lett. (2020): e12698.
Résumé: Coral reef fisheries depend on reef fish biomass to support ecosystem functioning and sustainable fisheries. Here, we evaluated coral reefs across 4,000 km of the Indonesian archipelago to reveal a large gradient of biomass, from 17,000 kg/ha. Trophic pyramids characterized by planktivore dominance emerged at high biomass, suggesting the importance of pelagic pathways for reef productivity. Total biomass and the biomass of most trophic groups were higher within gear restricted and no-take management, but the greatest biomass was found on unmanaged remote reefs. Within marine protected areas (MPAs), 41.6% and 43.6% of gear restricted and no-take zones, respectively, met a global biomass target of 500 kg/ha, compared with 71.8% of remote sites. To improve conservation outcomes for Indonesia's biodiverse and economically important coral reef fisheries, our results suggest to: (1) strengthen management within Indonesia's existing MPAs and (2) precautionarily manage remote reefs with high biomass.
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Cardiec, F., et al. "“Too Big To Ignore”: A feasibility analysis of detecting fishing events in Gabonese small-scale fisheries." Plos One. 15.6 (2020): e0234091.
Résumé: In many developing countries, small-scale fisheries provide employment and important food security for local populations. To support resource management, the description of the spatiotemporal extent of fisheries is necessary, but often poorly understood due to the diffuse nature of effort, operated from numerous small wooden vessels. Here, in Gabon, Central Africa, we applied Hidden Markov Models to detect fishing patterns in seven different fisheries (with different gears) from GPS data. Models were compared to information collected by on-board observers (7 trips) and, at a larger scale, to a visual interpretation method (99 trips). Models utilizing different sampling resolutions of GPS acquisition were also tested. Model prediction accuracy was high with GPS data sampling rates up to three minutes apart. The minor loss of accuracy linked to model classification is largely compensated by the savings in time required for analysis, especially in a context of nations or organizations with limited resources. This method could be applied to larger datasets at a national or international scale to identify and more adequately manage fishing effort.
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Cardoso de Melo, C., et al. "Haemulidae distribution patterns along the Northeastern Brazilian continental shelf and size at first maturity of the most abundant species." Reg. Stud. Mar. Sci.. 35 (2020): 101226.
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Caruana, A. M. N., et al. "Alexandrium pacificum and Alexandrium minutum: Harmful or environmentally friendly?" Mar. Environ. Res.. 160 (2020): 105014.
Résumé: Alexandrium minutum and Alexandrium pacificum are representatives of the dinoflagellate genus that regularly proliferate on the French coasts and other global coastlines. These harmful species may threaten shellfish harvest and human health due to their ability to synthesize neurotoxic alkaloids of the saxitoxin group. However, some dinoflagellates such as A. minutum, and as reported here A. pacificum as well, may also have a beneficial impact on the environment by producing dimethylsulfoniopropionate-DMSP, the precursor of dimethylsulfur-DMS and sulfate aerosols involved in climate balance. However, environmental conditions might influence Alexandrium physiology towards the production of harmful or environmentally friendly compounds. After assessing the influence of two salinity regimes (33 and 38) relative to each species origin (Atlantic French coast and Mediterranean Lagoon respectively), it appears that DMSP and toxin content was variable between the three experimented strains and that higher salinity disadvantages toxin production and tends to favor the production of the osmolytes DMSP and glycine betaine. Hence, this key metabolite production is strain and species-dependent and is influenced by environmental conditions of salinity which in turn, can diversely affect the environment. Widespread coastal blooms of A. minutum and A. pacificum, although being a risk for seafood contamination with toxins, are also a DMSP and DMS source that potentially contribute to the ecosystem structuration and climate. Regarding recent advances in DMSP biosynthesis pathway, 3 dsyB homologs were found in A. minutum but no homolog of the diatom sequence TpMMT.
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Cherel, Y., et al. "Micronektonic fish species over three seamounts in the southwestern Indian Ocean." Deep-Sea Res. Part II-Top. Stud. Oceanogr.. 176 (2020): 104777.
Résumé: Taxonomic composition, abundance and biological features of micronektonic fish were investigated using pelagic trawls conducted near and over the summits of three seamounts located in the western Indian Ocean (La Perouse, MAD-Ridge and Walters Shoal). Mesopelagic fish from three families accounted for 80% by number of the total catch (5714 specimens, 121 taxa), namely myctophids (59%), gonostomatids (12%) and sternoptychids (9%). Whereas the gonostomatid Sigmops elongatus was the most abundant species around La Perouse seamount, myctophids were the most diverse and dominant group by number in all three studied areas. Most myctophids were high-oceanic species, which included the numerically dominant Benthosema suborbitale, Ceratoscopelus warmingii, Diaphus perspicillatus, Hygophum hygomii, and Lobianchia dofleini. The few remaining myctophids (Diaphus suborbitalis being the most abundant) were pseudoceanic fish, highlighting the association with landmasses. The study adds one myctophid species new to the Indian Ocean (Diaphus bertelseni), and a second record in the literature of the recently described sternoptychid Argyripnus hulleyi.
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Chiarello, M., et al. "Exceptional but vulnerable microbial diversity in coral reef animal surface microbiomes." Proc. R. Soc. B-Biol. Sci.. 287.1927 (2020): 20200642.
Résumé: Coral reefs host hundreds of thousands of animal species that are increasingly threatened by anthropogenic disturbances. These animals host microbial communities at their surface, playing crucial roles for their fitness. However, the diversity of such microbiomes is mostly described in a few coral species and still poorly defined in other invertebrates and vertebrates. Given the diversity of animal microbiomes, and the diversity of host species inhabiting coral reefs, the contribution of such microbiomes to the total microbial diversity of coral reefs could be important, yet potentially vulnerable to the loss of animal species. Analysis of the surface microbiome from 74 taxa, including teleost fishes, hard and soft corals, crustaceans, echinoderms, bivalves and sponges, revealed that more than 90% of their prokaryotic phylogenetic richness was specific and not recovered in surrounding plankton. Estimate of the total richness associated with coral reef animal surface microbiomes reached up to 2.5% of current estimates of Earth prokaryotic diversity. Therefore, coral reef animal surfaces should be recognized as a hotspot of marine microbial diversity. Loss of the most vulnerable reef animals expected under present-day scenarios of reef degradation would induce an erosion of 28% of the prokaryotic richness, with unknown consequences on coral reef ecosystem functioning.
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Coelho, R., et al. "Local indicators for global species: Pelagic sharks in the tropical northeast Atlantic, Cabo Verde islands region." Ecological Indicators. 110 (2020): 105942.
Résumé: Pelagic sharks are an important bycatch in pelagic fisheries, especially for drifting longlines targeting swordfish. In the Cabo Verde Archipelago (tropical NE Atlantic), pelagic shark catches can reach a significant proportion of the total catches. Due to the increased concern on the status of pelagic shark species, this study was developed to enhance the current knowledge of those sharks in the Cabo Verde region in comparison to the adjacent areas, especially associated with European Union (EU) pelagic longline fishing activity. Stock status indicators for the two main species, blue shark (Prionace glauca) and shortfin mako (Isurus oxyrinchus), were developed, based on fisheries data from logbooks and onboard scientific observers, including analysis of size frequency distributions and standardized catch-per-unit-of-effort (CPUE) indexes over time. The standardized CPUEs have been stable or increasing for both species in the past 10 years, indicating no signs of local depletion. In terms of sizes, the blue shark catch is composed mainly of adults, which can be a sign of a stable population. On the contrary, the catch of shortfin mako is composed mainly of juveniles, which in conjunction of a decrease of mean size might be a cause of concern, highlighting possible overfishing on the species in the region. Thirty satellite tags, 25 archival miniPATs and 5 SPOT GPS, were deployed in the Cabo Verde Exclusive Economic Zone (EEZ), showing that those species are highly mobile. The biomass and size distributions were modeled with spatial and seasonal models (GAMs) identifying locations where juveniles are predominantly concentrated and that should be prioritized for conservation. This work presents new information on the status of pelagic sharks in the Cabo Verde region in the context of those highly migratory species, and can now be used to promote more sustainable fisheries in the region.
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Cousin, X., et al. "Microplastics and sorbed contaminants – Trophic exposure in fish sensitive early life stages." Mar. Environ. Res.. 161 (2020): 105126.
Résumé: The present study evaluated very small microplastic particle (MPs) transfer to zebrafish and marine medaka larvae via prey experimentally exposed to MPs from the onset of feeding. Larvae were fed Paramecium or Anemia nauplii loaded with fluorescent 1-5 or 10-20 mu m MP. Pollutant accumulation was analyzed by optically tracking of benzo[a]pyrene (BaP) and recording cyp1a transcription. Paramecium transferred 1-5 mu m particles only, whereas Artemia efficiently transferred both MPs. Although zebrafish and medaka larvae fed from the onset of active food intake (2-3 dph, respectively) on Paramecium and from days 6-7 post-hatch on Artemia nauplii, neither MP accumulation nor translocation to tissues was detected. MP egestion started within few hours after ingestion. Cyp1a induction and fluorescent analyses proved BaP bioavailability after transfer via Paramecium and Artemia. Unicellular or plankton organisms ingest contaminants via MPS and transfer effectively these to sensitive early life-stages of vertebrates, giving rise to whole-life exposure.
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Cresson, P., et al. "Primary production and depth drive different trophic structure and functioning of fish assemblages in French marine ecosystems." Progress in Oceanography (2020): 102343.
Résumé: Investigating the drivers of fish assemblage trophic structure is a critical question, in order to better understand ecosystem functioning, predict the effects of perturbations and implement integrated management of exploited marine ecosystems. Ecosystemic surveys enabled the determination of the trophic structure of the fish assemblages in three French marine ecosystems, namely the Eastern English Channel, the Bay of Biscay and the Gulf of Lions, through the simultaneous collection of qualitative (stable isotopes and energy content) and quantitative (biomass) data. In the Bay of Biscay and in the Gulf of Lions, pelagic primary production supported at least 80% of the fish biomass production, and explained the dominance of pelagic species, but with differences resulting from the different productivity. The lower productivity in the oligotrophic Gulf of Lions led to a lower total biomass, energy density as well as the predominance of zooplankton feeders. In contrast, fluxes in the Bay of Biscay were sufficient to support a higher biomass of pelagic piscivores, and of species with higher energy content. In the shallow Eastern English Channel, the respective contributions of pelagic and benthic sources were similar. Bentho-demersal species of higher trophic level dominated this assemblage, because of their ability to exploit both pathways. Results of the present study confirmed that fisheries-focused surveys can be used as efficient platforms to address questions about ecosystem functioning. Here it confirmed the expected differences between ecosystems and the importance of primary production and environment as drivers of fish assemblage structure and functioning. Future studies should nevertheless develop new methods to better assess the paramount role of low trophic level consumers.
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Crochelet, E., et al. "Connectivity between seamounts and coastal ecosystems in the Southwestern Indian Ocean." Deep-Sea Res. Part II-Top. Stud. Oceanogr.. 176 (2020): 104774.
Résumé: Understanding larval connectivity patterns is critical for marine spatial planning, particularly for designing marine protected areas and managing fisheries. Patterns of larval dispersal and connectivity can be inferred from numerical transport models at large spatial and temporal scales. We assess model-based connectivity patterns between seamounts of the Southwestern Indian Ocean (SWIO) and the coastal ecosystems of Mauritius, La Reunion, Madagascar, Mozambique and South Africa, with emphasis on three shallow seamounts (La Pemuse [LP], MAD-Ridge [MR] and Walters Shoal [WS]). Using drifter trajectory and a Lagrangian model of ichthyo-plankton dispersal, we show that larvae can undertake very long dispersion, with larval distances increasing with pelagic larval duration (PLD). There are three groups of greater connectivity: the region between the eastern coast of Madagascar, Mauritius and La Reunion islands; the seamounts of the South West Indian Ridge; and the pair formed by WS and a nearby un-named seamount. Connectivity between these three groups is evident only for the longest PLD examined (360 d). Connectivity from seamounts to coastal ecosystems is weak, with a maximum of 2% of larvae originating from seamounts reaching coastal ecosystems. Local retention at the three focal seamounts (LP, MR and WS) peaks at about 11% for the shortest PLD considered (15 d) at the most retentive seamount (WS) and decreases sharply with increasing PLD. Information on PLD and age of larvae collected at MR and LP are used to assess their putative origin. These larvae are likely self-recruits but it is also plausible that they immigrate from nearby coastal sites, i.e. the southern coast of Madagascar for MR and the islands of La Reunion and Mauritius for LP.
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Derolez, V., et al. "Fifty years of ecological changes: Regime shifts and drivers in a coastal Mediterranean lagoon during oligotrophication." Science of The Total Environment (2020): 139292.
Résumé: Thau lagoon is a large Mediterranean coastal lagoons and it supports traditional shellfish farming activities. It has been subject to eutrophication leading to major anoxic events associated with massive mortalities of shellfish stocks. Since the 1970s, improvements have been made to wastewater treatment systems, which have gradually led to oligotrophication of the lagoon. The aim of our study was to determine how the decrease in nutrient inputs resulted in major ecological changes in Thau lagoon, by analysing five decades of time-series (1970–2018) of observations on pelagic and benthic autotrophic communities. We were able to identify two periods during the oligotrophication process. Period 1 (1970–1992) was considered a eutrophic period, characterised by the shift from seagrass dominance to dominance of red macroalgae. Period 2 (1993–2018), characterised by improved eutrophication status, was further divided into three: a transition phase (1993–2003) during which the water column continued to recover but the benthic community lagged behind in recovery and in partial resilience; a regime shift (2003–2006), after which the water column became oligotrophic and seagrass began to recover (2007–2018). Considering anoxia crises as indicators of ecosystem resilience and resistance, we used a generalised linear model to analyse meteorological and environmental data with the aim of identifying the triggers of summer anoxia over the study period. Among the meteorological variables studied, air temperature had the strongest positive effect, followed by the period and wind intensity (both negative effects) and by rainfall in July (positive effect). The risk of triggering anoxia was lower in period 2, evidence for the increasing resistance of the ecosystem to climatic stress throughout the oligotrophication process. At the ecosystem scale and in the long term perspective, the ecological gains related to oligotrophication are especially important in the context of climate change, with more frequent and severe heat waves predicted.
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Dortel, E., L. Pecquerie, and E. Chassot. "A Dynamic Energy Budget simulation approach to investigate the eco-physiological factors behind the two-stanza growth of yellowfin tuna (Thunnus albacares)." Ecol. Model.. 437 (2020): 109297.
Résumé: The growth of yellowfin tuna has been the subject of considerable research efforts since the early 1960s. Most studies support a complex two-stanza growth pattern with a sharp acceleration departing from the von Bertalanffy growth curve used for most fish populations. This growth pattern has been assumed to result from a combination of physiological, ecological and behavioral factors but the role and contribution of each of them have not been addressed yet. We developed a bioenergetic model for yellowfin tuna in the context of Dynamic Energy Budget theory to mechanistically represent the processes governing yellowfin tuna growth. Most parameters of the model were inferred from Pacific bluefin tuna using body-size scaling relationships while some essential parameters were estimated from biological data sets collected in the Indian Ocean. The model proved particularly suitable for reproducing the data collected during the Pacific yellowfin tuna farming experience conducted by the Inter-American Tropical Tuna Commission at the Achotines Laboratory in Panama. In addition, model predictions appeared in agreement with knowledge of the biology and ecology of wild yellowfin tuna. We used our model to explore through simulations two major assumptions that might explain the existence of growth stanzas observed in wild yellowfin tuna: (i) a lower food supply during juvenile stage in relation with high infra- and inter-species competition and (ii) ontogenetic changes in food diet. Our results show that both assumptions are plausible although none of them is self-sufficient to explain the intensity of growth acceleration observed in wild Indian Ocean yellowfin tuna, suggesting that the two factors may act in concert. Our study shows that the yellowfin growth pattern is likely due to behavioral changes triggered by the acquisition of physiological abilities and anatomical traits through ontogeny that result in a major change in intensity of schooling and in a shift in the biotic habitat and trophic ecology of this commercially important tuna species.
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Duranton, M., et al. "The contribution of ancient admixture to reproductive isolation between European sea bass lineages." Evolution Letters (2020).
Résumé: Understanding how new species arise through the progressive establishment of reproductive isolation (RI) barriers between diverging populations is a major goal in Evolutionary Biology. An important result of speciation genomics studies is that genomic regions involved in RI frequently harbor anciently diverged haplotypes that predate the reconstructed history of species divergence. The possible origins of these old alleles remain much debated, as they relate to contrasting mechanisms of speciation that are not yet fully understood. In the European sea bass (Dicentrarchus labrax), the genomic regions involved in RI between Atlantic and Mediterranean lineages are enriched for anciently diverged alleles of unknown origin. Here, we used haplotype-resolved whole-genome sequences to test whether divergent haplotypes could have originated from a closely related species, the spotted sea bass (Dicentrarchus punctatus). We found that an ancient admixture event between D. labrax and D. punctatus is responsible for the presence of shared derived alleles that segregate at low frequencies in both lineages of D. labrax. An exception to this was found within regions involved in RI between the two D. labrax lineages. In those regions, archaic tracts originating from D. punctatus locally reached high frequencies or even fixation in Atlantic genomes but were almost absent in the Mediterranean. We showed that the ancient admixture event most likely occurred between D. punctatus and the D. labrax Atlantic lineage, while Atlantic and Mediterranean D. labrax lineages were experiencing allopatric isolation. Our results suggest that local adaptive introgression and/or the resolution of genomic conflicts provoked by ancient admixture have probably contributed to the establishment of RI between the two D. labrax lineages.
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Eduardo Nole, L., et al. "Biodiversity, ecology, fisheries, and use and trade of Tetraodontiformes fishes reveal their socio-ecological significance along the tropical Brazilian continental shelf." Aquat. Conserv.-Mar. Freshw. Ecosyst. (2020).
Résumé: Tetraodontiformes fishes play a critical role in benthic and demersal communities and are facing threats due to anthropogenic impacts and climate change. However, they are poorly studied worldwide. To improve knowledge on the socio-ecological significance and conservation of Tetraodontiformes a review of literature addressing the diversity, ecology, use and trade, conservation, and main threats of Tetraodontiformes combined with a comprehensive in situ dataset from two broad-range multidisciplinary oceanographic surveys performed along the Tropical Brazilian Continental Shelf was undertaken. Twenty-nine species were identified, being primarily found on coral reefs and algal ecosystems. At these habitats, tetraodontids present highly diversified trophic categories and might play an important role by balancing the marine food web Coral reef ecosystems, especially those near to the shelf break, seem to be the most important areas of Tetraodontiformes fishes, concentrating the highest values of species richness, relative abundance and the uncommon and Near Threatened species. Ninety per cent of species are commonly caught as bycatch, being also used in the ornamental trade (69%) and as food (52%), serving as an important source of income for artisanal local fisheries. Tetraodontiformes are threatened by unregulated fisheries, overexploitation, bycatch, and habitat loss due to coral reef degradation and the potential effects of climate change. These factors are more broadly impacting global biodiversity, food security, and other related ecosystem functions upon which humans and many other organisms rely. We recommend the following steps that could improve the conservation of Tetraodontiformes along the tropical Brazilian Continental shelf and elsewhere: (i) data collection of the commercial, incidental, ornamental and recreational catches; (ii) improvement of the current legislation directed at the marine ornamental harvesting; (iii) increase efforts focused on the education and conservation awareness in coastal tourism and communities; and, most important, (iv) creation of marine reserves networks in priority areas of conservation, protecting either the species and key habitats for its survival.
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Eduardo Nole, L., et al. "Hatchetfishes (Stomiiformes: Sternoptychidae) biodiversity, trophic ecology, vertical niche partitioning and functional roles in the western Tropical Atlantic." Prog. Oceanogr.. 187 (2020): 102389.
Résumé: Species of the family Sternoptychidae (hatchetfishes) occur worldwide and play critical roles by sequestering carbon, recycling nutrients, and acting as a key trophic link between epipelagic primary consumers and higher trophic levels in marine ecosystems. Nevertheless, basic knowledge on their ecology is still lacking and their functional ecology remains understudied with respect to composition, organization, functions and environment interactions. Here we integrated comprehensive information collected in the western Tropical Atlantic on the diversity, abundance, distribution and trophic ecology of hatchetfishes, including physicochemical features of their habitats and extensive carbon and nitrogen stable isotope data on its main prey groups. On this basis we defined five functional groups of hatchetfishes with different diet preference, isotopic composition, and vertical abundance peaks and reveal a possible high resource partitioning. Additionally, these species might have a different feeding tie chronology. Hence, hatchetfishes segregate in different ecological groups responding differently to environmental constraints including oxygen concentration and presenting diverse functional roles. As deep-sea species that migrate to epipelagic waters, hatchetfishes may play a key role in the transfer of subsurface photoassimilated carbon to deeper waters, a pathway through which the effects of climate change at the surface are transferred to the deep ocean. Moreover, as consumers of gelatinous organisms, these species convert “gelatinous energy” into “fish energy” readily usable by higher trophic levels, including endangered and commercially important species. This is a crucial trophic relationship that has been historically underestimated due to methodology limitations (e.g., quickly digested gelatinous organisms were probably underestimated in previous studies, based solely on stomach contents). Considering in ecosystem models this trophic relationship, as well as the functional organization of hatchetfishes, is important to properly answer key ecological questions including resource use, carbon transportation, and influence of mesopelagic community in climate change process.
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Eduardo Nole, L., et al. "Trophic ecology, habitat, and migratory behaviour of the viperfish Chauliodus sloani reveal a key mesopelagic player." Sci Rep. 10.1 (2020): 20996.
Résumé: Mesopelagic fishes are numerically the most important vertebrate group of all world's oceans. While these species are increasingly threatened by anthropogenic activities, basic biological knowledge is still lacking. For instance, major uncertainties remain on the behaviour, ecology, and thus functional roles of mesopelagic micronektivores, particularly regarding their interactions with physicochemical features. Here, we examine the trophic ecology, habitat, and migratory behaviour of the viperfish (Chauliodus sloani)-a poorly known and abundant deep-sea species-to further understand the ecology and thus functional role of mesopelagic micronektivores. Moreover, we explore how physical drivers may affect these features and how these relationships are likely to change over large oceanic areas. The viperfish heavily preys on epipelagic migrant species, especially myctophids, and presents spatial and trophic ontogenetic shifts. Temperature restricts its vertical distribution. Therefore, its trophodynamics, migratory behaviour, and functional roles are expected to be modulated by the latitudinal change in temperature. For instance, in most tropical regions the viperfish stay full-time feeding, excreting, and serving as prey (e.g. for bathypelagic predators) at deep layers. On the contrary, in temperate regions, the viperfish ascend to superficial waters where they trophically interact with epipelagic predators and may release carbon where its remineralization is the greatest.
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Eduardo Nole, L., et al. "Length-weight relationship of twelve mesopelagic fishes from the western Tropical Atlantic." J. Appl. Ichthyol. (2020).
Résumé: Length-weight relationship parameters were calculated for twelve mesopelagic fish species from the western Tropical Atlantic:Diretmus argenteus, Melamphaes polylepis, Bolinichthys distofax, Diaphus lucidus, Diaphus splendidus, Electrona risso, Hygophum taaningi, Taaningichthys bathyphilus, Melanolagus bericoides, Winteria telescopa, Diplophos taenia, Astronesthes similus.Data was collected off northeastern Brazil from April 9th to May 6th, 2017. Hauls were conducted during day and night at 47 stations by using a micronekton trawl (body mesh: 40 mm, cod-end mesh: 10 mm) from 10 to 1,113 m depth. The material was fixed in a 4% formalin solution for 1 month and then preserved in a 70% alcohol solution for proximally 6 months before processing for length (nearest 0.1 cm of standard length) and weight (nearest 0.01 g of total weight). A new maximum standard length forWinteria telescopais also provided.
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Ferrari, S., et al. "Physiological responses during acute stress recovery depend on stress coping style in European sea bass, Dicentrarchus labrax." Physiol. Behav.. 216 (2020): 112801.
Résumé: Individual stress coping style (reactive, intermediate and proactive) was determined in 3 groups of 120 pit tagged European seabass using the hypoxia avoidance test. The same three groups (no change in social composition) were then reared according to the standards recommended for this species. Then, 127 days later, individuals initially characterized as reactive, intermediate or proactive were submitted to an acute confinement stress for 30 min. Blood samples were taken to measure plasma cortisol levels 30 min (Stress30) or 150 min (Stress150) after the end of the confinement stress. Individuals were then sacrificed to sample the telencephalon in order to measure the main monoamines and their catabolites (at Stress30 only). Individuals from Stress150 were sampled for whole brain for a transcriptomic analysis. The main results showed that reactive individuals had a lower body mass than intermediate individuals which did not differ from proactive individuals. The physiological cortisol response did not differ between coping style at Stress30 but at Stress150 when intermediate and proactive individuals had recovered pre stress levels, reactive individuals showed a significant higher level illustrating a modulation of stress recovery by coping style. Serotonin turnover ratio was higher in proactive and reactive individuals compared to intermediate individuals and a significant positive correlation was observed with cortisol levels whatever the coping style. Further, the confinement stress led to a general increase in the serotonin turnover comparable between coping styles. Stress150 had a significant effect on target mRNA copy number (Gapdh mRNA copy number decreased while ifrd1 mRNA copy number increased) and such changes tended to depend upon coping style.
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Feuilloley, G., et al. "Concomitant changes in the environment and small pelagic fish community of the Gulf of Lions." Prog. Oceanogr.. 186 (2020): 102375.
Résumé: An important decrease in small pelagic fish condition and size has been observed in the most productive ecosystem of the Mediterranean Sea, the Gulf of Lions, since 2008, leading to an important fishery crisis. Previous studies suggested bottom-up control to be the most probable cause for these changes. Here, we investigate whether an environmental change might have caused such a situation. In the absence of zooplankton time series, this study aims at describing temporal changes in key abiotic factors for the planktonic and fish production of the Gulf of Lions, such as SST, meso-scale fronts, wind-induced coastal upwelling, river discharge, water stratification and deep convection and then at understanding potential link on Chl-a concentration as well as small pelagic fish populations. Our results indicate that the environmental conditions have broadly changed in the Gulf of Lion, with a major change in the mid-2000s, affecting the Chla concentration (which showed a regime shift in 2007), but also the SST, the upwelling and frontal activities, the Rhone river discharge (and particularly the N and P nutrients inputs) as well as the deep winter convection. Those changes could have affected the plankton production and consequently the small pelagic fish community that displayed similar patterns of variations as the environmental conditions.
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Forget, F., et al. "Beta diversity of pelagic assemblages at fish aggregating devices in the open ocean." African Journal of Marine Science. 42.2 (2020): 247–254.
Résumé: Owing to difficulties in accessing the vast open ocean, the beta (β) diversity of pelagic fish assemblages remains poorly studied. We investigated the relationship between assemblage similarity and geographical distance between anchored fish aggregating devices (FADs), sampled by standardised underwater visual censuses in three anchored FAD arrays in the Indian Ocean—at the Maldives, the Seychelles and Mauritius. The use of two complementary indices of β-diversity, based on presence/absence data (Jaccard similarity coefficient) and abundance data (Bray–Curtis index), revealed that geographical distance between sampling sites (from 4 to 257 km) appeared to have no effect on the similarity of fish assemblages associated with FADs within each array. The results of this preliminary study question the generalisation of the paradigm of an increase in β-diversity with geographic distance to the open-ocean fish community. Large-scale studies using a variety of datasets should be conducted to further investigate patterns of β-diversity in the open ocean.
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Fu, C., et al. "The cumulative effects of fishing, plankton productivity, and marine mammal consumption in a marine ecosystem." Front. Mar. Sci.. 7 (2020).
Résumé: The marine ecosystem off British Columbia (BC), Canada, has experienced various changes in the last two decades. Understanding how stressors interactively and cumulatively affect commercially important fish species is key to moving towards ecosystem-based fisheries management. Because it is challenging to assess the cumulative effects of multiple stressors by using empirical data alone, a dynamic, individual-based spatially-explicit ecosystem modeling platform such as OSMOSE represents a valuable tool to simulate ecological processes and comprehensively evaluate how stressors cumulatively impact modelled species. In this study, we employed OSMOSE to investigate the cumulative effects of fishing, plankton biomass change, and marine mammal consumption on the dynamics of some fish species and the BC marine ecosystem as a whole. We specifically simulated ecosystem dynamics during the last 20 years under two sets of scenarios: (1) unfavorable conditions from the perspective of commercial fish species (i.e., doubling fishing rates, halving plankton biomass, and doubling marine mammal biomass, acting individually or collectively); and (2) favorable conditions with the three factors having opposite changes (i.e., halving fishing rates, doubling plankton biomass, and halving marine mammal biomass, acting individually or collectively). Our results indicate that, under unfavorable conditions, the degree to which species biomass was reduced varied among species, and that negative synergistic and negative dampened effects were dominant under historical and doubled fishing mortality rates, respectively. Under favorable conditions, species biomasses did not increase as much as expected due to the existence of complex predator-prey interactions among fish species, and positive synergistic and positive dampened effects were prevailing under historical and halved fishing mortality rates, respectively. The ecosystem total biomass and the biomass to fisheries yield ratio were found to be good ecological indicators to represent ecosystem changes and track the impacts from the multiple drivers of change. Our research provides insights on how fisheries management should adapt to prepare for potential future impacts of climate change.
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Galasso, H. L., et al. "Using the Dynamic Energy Budget theory to evaluate the bioremediation potential of the polychaete Hediste diversicolor in an integrated multi-trophic aquaculture system." Ecol. Model.. 437 (2020): 109296.
Résumé: Integrated Multi-Trophic Aquaculture (IMTA) systems have been designed to optimize nutrient and energy use, to decrease waste, and to diversify fish-farm production. Recently, the development of detritivorous aquaculture has been encouraged, as detrivores can consume organic particulate matter, reducing benthic eutrophication and the environmental footprint of aquaculture. To this end, the polychaete Hediste diversicolor is a promising species due to its broad feeding behaviour and its resistance in a wide range of environments. In this study, an existing Dynamic Energy Budget (DEB) model of H. diversicolor was used to predict the ragworm's metabolic processes in various environmental conditions and to estimate its bioremediation capacity in an aquaculture context. First, the scaled functional response (f) was calibrated in a 98-day growth experiment with two types of food (Fish faeces and Fish feed). Then, we further validated the model using data on the ammonia excretion and oxygen consumption of individuals fed with fish faeces at four different temperatures using the previously calibrated f. Overall, we found that the DEB model was able to correctly predict the experimental data (0.51 < MRE <0.80). Lastly, different environmental scenarios of seawater temperatures and assimilation rates were compared. The bioremediation potential of H. diversicolor was estimated based on cumulated assimilation rates, which could represent 75-289 kg of fish waste year(-1) for a 100 m(2) ragworm farm (3700 ind. m(-2)). These findings suggest that the DEB model is a promising tool for further IMTA development and management.
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Gilman, E., et al. "Effect of pelagic longline bait type on species selectivity: a global synthesis of evidence." Rev. Fish. Biol. Fish.. 30.3 (2020): 535–551.
Résumé: Fisheries can profoundly affect bycatch species with 'slow' life history traits. Managing bait type offers one tool to control species selectivity. Different species and sizes of marine predators have different prey, and hence bait, preferences. This preference is a function of a bait's chemical, visual, acoustic and textural characteristics and size, and for seabirds the effect on hook sink rate is also important. We conducted a global meta-analysis of existing estimates of the relative risk of capture on different pelagic longline baits. We applied a Bayesian random effects meta-analytic regression modelling approach to estimate overall expected bait-specific catch rates. For blue shark and marine turtles, there were 34% (95% HDI: 4-59%) and 60% (95% HDI: 44-76%) significantly lower relative risks of capture on forage fish bait than squid bait, respectively. Overall estimates of bait-specific relative risk were not significantly different for seven other assessed taxa. The lack of a significant overall estimate of relative capture risk for pelagic shark species combined but significant effect for blue sharks suggests there is species-specific variability in bait-specific catch risk within this group. A qualitative literature review suggests that tunas and istiophorid billfishes may have higher catch rates on squid than fish bait, which conflicts with reducing marine turtle and blue shark catch rates. The findings from this synthesis of quantitative and qualitative evidence support identifying economically viable bycatch management measures with acceptable tradeoffs when multispecies conflicts are unavoidable, and highlight research priorities for global pelagic longline fisheries.
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Gueroun, S. K. M., et al. "Population dynamics and predatory impact of the alien jellyfish Aurelia solida (Cnidaria, Scyphozoa) in the Bizerte Lagoon (southwestern Mediterranean Sea)." Mediterr. Mar. Sci.. 21.1 (2020): 22–35.
Résumé: Understanding the life cycle strategies and predatory impact of alien jellyfish species is critical to mitigate the impact that these organisms may have on local populations, biodiversity, and ultimately on the functioning of food webs. In the Mediterranean Sea, little is known about the dynamics of alien jellyfish, despite this biodiversity hotspot being one of the most threatened areas by increasing numbers of alien jellyfish. Here, we investigated the population dynamics and predatory impact of a non-indigenous scyphomedusa, Aurelia solida Browne 1905, in the Bizerte Lagoon, Tunisia. The study was based on bimonthly surveys performed over two consecutive years, from November 2012 to August 2014. Field observations showed that the planktonic phase of A. solida occurs from winter to early summer. Prey composition was investigated by means of gut content and field zooplankton analyses. Calanoid copepods, mollusc larvae, and larvaceans represented the main food items of A. solida. To determine the jellyfish feeding rate and their predatory impact on zooplankton populations, the digestion time for zooplankton prey was assessed at three different temperatures: 13, 18, and 23 degrees C in laboratory conditions, corresponding to the average range of temperatures encountered by A. solida in the Bizerte Lagoon. We found that A. solida consumed 0.5-22.5% and 0.02-37.3% of the daily zooplankton standing stock in 2013 and 2014, respectively. These results indicate a non-negligible but restricted seasonal grazing impact on some mesozooplankton groups, explained by the relatively short lifespan of the medusa stage (5-6 months).
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Handal, W., et al. "New insights on the population genetic structure of the great scallop (Pecten maximus) in the English Channel, coupling microsatellite data and demogenetic simulations." Aquat. Conserv.-Mar. Freshw. Ecosyst.. 30.10 (2020): 1841–1853.
Résumé: The great scallop (Pecten maximus) is a commercially important bivalve in Europe, particularly in the English Channel, where fisheries are managed at regional and local scales through the regulation of fishing effort. In the long term, knowledge about larval dispersal and gene flow between populations is essential to ensure proper stock management. Yet, previous population genetic studies have reported contradictory results. In this study, scallop samples collected across the main fishing grounds along the French and English coasts of the English Channel (20 samples with temporal replicates for three sites,n= 1059 individuals), and the population genetic structure was analysed using 13 microsatellite loci. Coupling empirical genetic data with demogenetic modelling based on a biophysical model simulating larval exchanges among scallop beds revealed a subtle genetic differentiation between south-west English populations and the rest of the English Channel, which was consistent with larval dispersal simulations. The present study provides a step forward in the understanding of great scallop population biology in the English Channel, underlining the fact that even in a context of potentially high gene flow and recent divergence times since the end of the last glacial maximum, weak but significant spatial genetic structure can be identified at a regional scale.
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Harris, S. A., et al. "Ichthyoplankton assemblages at three shallow seamounts in the South West Indian Ocean." Deep-Sea Res. Part II-Top. Stud. Oceanogr.. 176 (2020): 104809.
Résumé: The composition and spatial variability of ichthyoplankton assemblages were investigated at three shallow seamounts between latitudes 19 degrees S and 33 degrees S in the South West Indian Ocean (SWIO) – La Perouse (60 m), an unnamed pinnacle south of Madagascar, referred to hereafter as MAD-Ridge (240 m), and the Walters Shoal seamount (18 m). In all, 299 larvae (23 families, 54 species) were present at La Perouse, 964 larvae (58 families and 127 species) at MAD-Ridge, and 129 larvae (9 families, 24 species) at the Walters Shoal. Larvae of mesopelagic fish in the families Myctophidae and Gonostomatidae were the most dominant at all three seamounts. All developmental stages were present at each seamount, suggesting the larval pelagic phase of certain species occurs at the seamounts. A 'seamount effect' was detected only at MAD-Ridge where larval fish densities were significantly higher at summit stations. Overall, MAD-Ridge had much higher densities of fish larvae (157.0 larvae 100 m(-3)) than La Perouse (31.1 larvae 100 m(-3)) and the Walters Shoal (9.6 larvae 100 m(-3)). Our study demonstrates that ichthyoplankton communities at shallow seamounts in the SWIO are more influenced by their location relative to a landmass, and to oceanographic features such as currents, mesoscale eddies and water masses than the seamount latitude and topography itself.
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Hauser, M., et al. "Unmasking continental natal homing in goliath catfish from the upper Amazon." Freshw. Biol.. 65.2 (2020): 325–336.
Résumé: Amazonian goliath catfishes are widespread in the Amazon Basin. Recently, otolith Sr-87:Sr-86 analyses using laser ablation-multi-collector-inductively coupled plasma mass spectrometry (LA-MC-ICPMS) revealed a >8,000 km trans-Amazonian natal homing in Brachyplatystoma rousseauxii among fish caught and hatched in the largest Amazon River tributary, the upper Madeira basin. Although also suspected for fish in the upper Amazon, homing could not be demonstrated owing to less distinct environmental Sr-87:Sr-86 gradients along the Amazon mainstem. Using scanning X-ray fluorescence microscopy (SXFM), a separate study provided evidence that Se:Ca and Sr:Ca are useful markers for identifying migration into Andean headwaters and the estuarine environment. We analysed otoliths of known Sr-87:Sr-86 profiles using SXFM mapping to test if Sr:Ca and Se:Ca patterns could demonstrate natal homing for three fish caught in the upper Amazon, using as reference two individuals that were natal homers and two forced residents (hatched after the construction of hydroelectric dams on the Madeira River) from the upper Madeira River. As hypothesised, although the Sr isotope profiles of the upper Amazon individuals were uninformative, two of them presented similar alternating mirror patterns of Sr:Ca and Se:Ca to those of the upper Madeira natal homers, indicating migrations out of the Andean region and into the estuary area. Both were therefore natal homers from the upper Amazon. The third individual from the upper Amazon presented similar Sr:Ca and Se:Ca patterns to those of the upper Madeira residents, suggesting it was a natural resident from the upper Amazon. By combining the results of Sr-87:Sr-86 analyses (LA-MC-ICPMS) and Sr:Ca and Se:Ca mappings (SXFM) that are completely independent of one another, we demonstrated that B. rousseauxii also performs natal homing in the upper Amazon. Our results indicate that the life cycle of B. rousseauxii is more complex than previous literature hypothesised, with the existence of partial migration, even in absence of physical barriers. Quantifying the relative importance of these different life-history strategies will have important implications for fisheries management. Our results also lay the groundwork for conservation efforts in the context of hydropower development in the Amazon Basin and set testable hypotheses of the potential impacts of the Madeira River dams.
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Husson, B., et al. "Suitable habitats of fish species in the Barents Sea." Fish Oceanogr.. 29.6 (2020): 526–540.
Résumé: Many marine species exhibit poleward migrations following climate change. The Barents Sea, a doorstep to the fast-warming Arctic, is experiencing large scale changes in its environment and its communities. Tracking and anticipating changes for management and conservation purposes at the scale of the ecosystem necessitate quantitative knowledge on individual species distribution drivers. This paper aims at identifying the factors controlling demersal habitats in the Barents Sea, investigating for which species we can predict current and future habitats and inferring those most likely to respond to climate change. We used non-linear quantile regressions (QGAM) to model the upper quantile of the biomass response of 33 fish species to 10 environmental gradients and revealed three environmental niche typologies. Four main predictors seem to be limiting species habitat: bottom and surface temperature, salinity, and depth. We highlighted three cases of present and future habitat predictability: (a) Habitats of widespread species are not likely to be limited by the existing conditions within the Barents Sea. (b) Habitats limited by a single factor are predictable and could shift if impacted by climate change. If the factor is depth, the habitat may stagnate or shrink if the environment becomes unsuitable. (c) Habitats limited by several factors are also predictable but need to be predicted from QGAM applied on projected environmental maps. These modeled suitable habitats can serve as input to species distribution forecasts and end-to-end models, and inform fisheries and conservation management.
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Januchowski-Hartley, F. A., et al. "Low fuel cost and rising fish price threaten coral reef wilderness." Conserv. Lett. (2020): e12706.
Résumé: Wilderness areas offer unparalleled ecosystem conditions. However, growing human populations and consumption are among factors that drive encroachment on these areas. Here, we explore the threat of small-scale fisheries to wilderness reefs by developing a framework and modeling fluctuations in fishery range with fuel costs and fish prices. We modeled biomass of four fishery groups across the New Caledonian archipelago, and used fish and fuel prices from 2005 to 2020 to estimate the extent of exploited reefs across three fishing scenarios. From 2012 to 2018, maximum profitable range increased from 15 to over 30 hr from the capital city, expanding to reefs previously uneconomic to fish, including a UNESCO heritage site. By 2020, over half of New Caledonian (similar to 17% global) wilderness reefs will become profitable to fish. Our results demonstrate that remoteness from humans should not be considered protection for wilderness coral reefs in the context of rising fish prices.
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Jaonalison, H., et al. "Predicting species richness and abundance of tropical post-larval fish using machine learning." Marine Ecology Progress Series. 645 (2020): 125–139.
Résumé: Post-larval prediction is important, as post-larval supply allows us to understand juvenile fish populations. No previous studies have predicted post-larval fish species richness and abundance combining molecular tools, machine learning, and past-days remotely sensed oceanic conditions (RSOCs) obtained in the days just prior to sampling at different scales. Previous studies aimed at modeling species richness and abundance of marine fishes have mainly used environmental variables recorded locally during sampling and have merely focused on juvenile and adult fishes due to the difficulty of obtaining accurate species richness estimates for post-larvae. The present work predicted post-larval species richness (identified using DNA barcoding) and abundance at 2 coastal sites in SW Madagascar using random forest (RF) models. RFs were fitted using combinations of local variables and RSOCs at a small-scale (8 d prior to fish sampling in a 50 × 120 km2 area), meso-scale (16 d prior; 100 × 200 km2), and large-scale (24 d prior; 200 × 300 km2). RF models combining local and small-scale RSOC variables predicted species richness and abundance best, with accuracy around 70 and 60%, respectively. We observed a small variation of RF model performance in predicting species richness and abundance among all sites, highlighting the consistency of the predictive RF model. Moreover, partial dependence plots showed that high species richness and abundance were predicted for sea surface temperatures <27.0°C and chlorophyll a concentrations <0.22 mg m-3. With respect to temporal changes, these thresholds were solely observed from November to December. Our results suggest that, in SW Madagascar, species richness and abundance of post-larval fish may only be predicted prior to the ecological impacts of tropical storms on larval settlement success.
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L'Honore, T., et al. "Inter-individual variability in freshwater tolerance is related to transcript level differences in gill and posterior kidney of European sea bass." Gene. 741 (2020): 144547.
Résumé: Acclimation to low salinities is a vital physiological challenge for euryhaline fish as the European sea bass Dicentrarchus labrax. This species undertakes seasonal migrations towards lagoons and estuaries where a wide range of salinity variations occur along the year. We have previously reported intraspecific differences in freshwater tolerance, with an average 30% mortality rate. In this study, we bring new evidence of mechanisms underlying freshwater tolerance in sea bass at gill and kidney levels. In fresh water (FW), intraspecific differences in mRNA expression levels of several ion transporters and prolactin receptors were measured. We showed that the branchial Cl-/HCO3- anion transporter (slc26a6c) was over-expressed in freshwater intolerant fish, probably as a compensatory response to low blood chloride levels and potential metabolic alkalosis. Moreover, prolactin receptor a (prlra) and Na+/Cl- cotransporter (ncc1) but not ncc-2a expression seemed to be slightly increased and highly variable between individuals in freshwater intolerant fish. In the posterior kidney, freshwater intolerant fish exhibited differential expression levels of slc26 anion transporters and Na+/K+/2Cl(-) co-transporter 1b (nkcc1b). Lower expression levels of prolactin receptors (prlra, prlrb) were measured in posterior kidney which probably contributes to the failure in ion reuptake at the kidney level. Freshwater intolerance seems to be a consequence of renal failure of ion reabsorption, which is not sufficiently compensated at the branchial level.
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Lacoste, E., C. W. McKindsey, and P. Archambault. "Biodiversity–Ecosystem Functioning (BEF) approach to further understanding aquaculture–environment interactions with application to bivalve culture and benthic ecosystems." Reviews in Aquaculture (2020).
Résumé: Coastal benthic ecosystems may be impacted by numerous human activities, including aquaculture, which continues to expand rapidly. Indeed, today aquaculture worldwide provides more biomass for human consumption than do wild fisheries. This rapid development raises questions about the interactions the practice has with the surrounding environment. In order to design strategies of sustainable ecosystem exploitation and marine spatial planning, a better understanding of coastal ecosystem functioning is needed so that tools to quantify impacts of human activities, including aquaculture, may be developed. To achieve this goal, some possible directions proposed are integrated studies leading to new concepts, model development based on these concepts and comparisons of various ecosystems on a global scale. This review draws on existing literature to (i) briefly summarize the major ecological interactions between off-bottom shellfish aquaculture and the environment, (ii) introduce research on the influence of benthic diversity on ecosystem functioning (BEF relationships) and (iii) propose a holistic approach to conduct aquaculture–environment studies using a BEF approach, highlighting the need for integrated studies that could offer insights and perspectives to guide future research efforts and improve the environmental management of aquaculture.
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Lapegue, S., et al. "Genetic Characterization of Cupped Oyster Resources in Europe Using Informative Single Nucleotide Polymorphism (SNP) Panels." Genes. 11.4 (2020): 451.
Résumé: The Pacific oyster, Crassostrea gigas, was voluntarily introduced from Japan and British Columbia into Europe in the early 1970s, mainly to replace the Portuguese oyster, Crassostrea angulata, in the French shellfish industry, following a severe disease outbreak. Since then, the two species have been in contact in southern Europe and, therefore, have the potential to exchange genes. Recent evolutionary genomic works have provided empirical evidence that C. gigas and C. angulata exhibit partial reproductive isolation. Although hybridization occurs in nature, the rate of interspecific gene flow varies across the genome, resulting in highly heterogeneous genome divergence. Taking this biological property into account is important to characterize genetic ancestry and population structure in oysters. Here, we identified a subset of ancestry-informative makers from the most differentiated regions of the genome using existing genomic resources. We developed two different panels in order to (i) easily differentiate C. gigas and C. angulata, and (ii) describe the genetic diversity and structure of the cupped oyster with a particular focus on French Atlantic populations. Our results confirm high genetic homogeneity among Pacific cupped oyster populations in France and reveal several cases of introgressions between Portuguese and Japanese oysters in France and Portugal.
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Le Bihanic, F., et al. "Organic contaminants sorbed to microplastics affect marine medaka fish early life stages development." Mar. Pollut. Bull.. 154 (2020): 111059.
Résumé: The role of polyethylene microplastics 4-6 mu m size (MPs) in the toxicity of environmental compounds to fish early life stages (ELS) was investigated. Marine medaka Oryzias melastigma embryos and larvae were exposed to suspended MPs spiked with three model contaminants: benzo(a)pyrene (MP-BaP), perfluorooctanesulfonic acid (MP-PFOS) and benzophenone-3 (MP-BP3) for 12 days. There was no evidence of MPs ingestion but MPs agglomerated on the surface of the chorion. Fish ELS exposed to virgin MPs did not show toxic effects. Exposure to MP-PFOS decreased embryonic survival and prevented hatching. Larvae exposed to MP-BaP or MP-BP3 exhibited reduced growth, increased developmental anomalies and abnormal behavior. Compared to equivalent water-borne concentrations, BaP and PFOS appeared to be more embryotoxic when spiked on MPs than when alone in seawater. These results suggest a relevant pollutant transfer by direct contact of MPs to fish ELS that should be included in the ecotoxicological risk assessment of MPs.
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Leblad, B. R., et al. "Seasonal variations of phytoplankton assemblages in relation to environmental factors in Mediterranean coastal waters of Morocco, a focus on HABs species." Harmful Algae. 96 (2020): 101819.
Résumé: Studies on phytoplankton and in particular Harmful Algal Blooms (HABs) species in southern Mediterranean waters are scarce. We performed from April 2008 to June 2009 weekly investigations on microphytoplankton community structure and abundance in two contrasted marine ecosystems located in the western Moroccan Mediterranean coast, M'diq Bay and Oued Laou Estuary. Simultaneously, we measured the main physico-chemical parameters. Globally, the two studied areas showed comparable values of the assessed abiotic environmental factors. Temperature and salinity followed seasonal variation with values ranging from 13.5 degrees C to 21.4 degrees C and 31 to 36.8, respectively. Average nutrient values in surface water ranged from 0.7 to 45.76 mu M for dissolved inorganic nitrogen, 0.02-2.10 mu M for PO4 and 0.23-17.46 mu M for SiO4 in the study areas. A total of 92 taxa belonging to 8 taxonomic classes were found. The highest number of microphytoplankton abundance reached 1.2 x 10(6) cells L-1 with diatoms being the most abundant taxa. Factorial Discriminant Analysis (FDA) and Spearman correlation test showed a significant seasonal discrimination of dominant microphytoplankton species. These micro-organisms were associated with different environmental variables, in particular temperature and salinity. Numerous HABs species were encountered regularly along the year. Although Dinophysis species and Prorocentrum lima were present in both sites, no Lipophilic Shellfish Poisoning was detected for the analyzed bivalve mollusks. Domoic acid (DA), produced by toxic species of Pseudo-nitzschia was found with concentrations up to 18 mu g DA g(-1) in the smooth clam Callista chione. Data showed that the observed persistent and dramatic Paralytic Shellfish Poisoning (PSP) intoxication of mollusks resulted probably of Gymnodinium catenatum proliferations in both studied areas. Contrary to C. chione, the cockle Achanthocardia tuberculatum showed a permanent and extremely high toxicity level during the 15 months survey with up to 7545 mu g Equivalent Saxitoxin kg(-1) flesh (ten times higher than the sanitary threshold of 800 tg eqSTX Kg(-1) flesh). The present work highlights for the first time the dynamic of microphytoplankton including HABs species and their associated toxin accumulation in the commercially exploited shellfish in the southern western Mediterranean waters of Morocco. Furthermore, the acquired data will help us to improve the monitoring of HABs species and related toxins in these coastal marine systems.
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Lett, C., N. Barrier, and M. Bahlali. "Converging approaches for modeling the dispersal of propagules in air and sea." Ecol. Model.. 415 (2020): 108858.
Résumé: Terrestrial plants seeds, spores and pollen are often dispersed by wind. Likewise, most eggs and larvae of marine organisms are dispersed by oceanic currents. It was historically believed that the spatial scale at which dispersal occurs was orders of magnitude smaller for plants than for fish. However, recent empirical estimates of seed and larval dispersal suggest that these dispersal scales are more alike than previously thought. The modeling approaches used to simulate aerial and aquatic dispersal are also converging. Similar biophysical models are developed, in which outputs of Eulerian models simulating the main physical forcing mechanism (wind or currents) are used as inputs to Lagrangian models that include biological components (such as seed terminal velocity or larval vertical migration). These biophysical models are then used to simulate trajectories of the biological entities (seeds, larvae) in three dimensions. We reflect on these converging trends by first putting them into an historical perspective, and then by comparing the physical and biological processes represented in marine larva vs. terrestrial seed dispersal models, the data used for the models output corroboration, and the tools available to perform simulations. We conclude that this convergence offers the opportunity to bridge the gap between two scientific communities which are currently largely disconnected. More broadly, we also see our comparison across systems as a useful way to strengthen the links between aquatic and terrestrial ecology by sharing knowledge, methods, tools, and concepts.
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Lloret, J., et al. "The poor health of deep-water species in the context of fishing activity and a warming climate: will populations of Molva species rebuild or collapse?" J. Fish Biol. (2020).
Résumé: Many deep-water fish populations, being K-selected species, have little resilience to overexploitation and may be at serious risk of depletion as a consequence. Sea warming represents an additional threat. In this study, the condition, or health, of several populations of common ling (Molva molva), blue ling (Molva dypterygia) and Mediterranean or Spanish ling (Molva macrophthalma) inhabiting different areas in the North Atlantic and the Mediterranean was evaluated, to shed light on the challenges these deep-water species are facing in the context of fishing activity and a warming climate. The data on the condition of Molva populations which are analysed here have been complemented with data on abundance and, for the southernmost species (Mediterranean ling), with two other health indicators (parasitism and hepato-somatic index). Despite some exceptions (e.g., common ling in Icelandic waters), this study shows that the condition of many populations of Molva species in the northeastern Atlantic and the Mediterranean Sea has worsened, a trend which, in recent decades, has usually been found to be accompanied by a decline in their abundance. In addition, the poor health status of most populations of common ling, blue ling and Mediterranean ling considered in this analysis points to a lower sustainability of these populations in the future. Overall, the health status and abundance of Molva populations in the northeastern Atlantic and the Mediterranean suggest that only some populations located in the North Atlantic may be able to rebuild, whereas the populations in southern North Atlantic and the Mediterranean, which are probably most at risk from sea warming, are facing serious difficulties in doing so. In the context of fisheries and global warming, this study's results strongly indicate that management bodies need to consider the health status of many of the populations of Molva species, particularly in southern European waters, before implementing their decisions.
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Maire, E., et al. "Disentangling the complex roles of markets on coral reefs in northwest Madagascar." Ecol. Soc.. 25.3 (2020): 23.
Résumé: Rapid degradation of the world's coral reefs jeopardizes their ecological functioning and ultimately imperils the wellbeing of the millions of people with reef-dependent livelihoods. Ecosystem accessibility is the main driver of their conditions, with the most accessible ecosystems being most at risk of resource depletion. People's socioeconomic conditions can change as they get further from urban centers and can profoundly influence people's relationship with the environment. However, the mechanisms through which increasing accessibility from human societies affects natural resources are still unclear. A plausible mechanism through which markets influence the environment is through the socioeconomic changes that tend to accompany accessibility. We used social and ecological data from 10 coastal communities and 31 reefs in northwest Madagascar to (i) unravel the respective influences of the local fish market and coastal communities on reef fish biomass and (ii) investigate how communities' socioeconomic and resource use characteristics change with increasing proximity to markets. We used generalized additive models to reveal that reef fish biomass is strongly related to the accessibility of both markets and local communities. We also highlight that the ways coastal communities use marine resources changes predictably with market proximity. More precisely, market proximity affects fishing gear (technique effect), wealth, and selling strategies (scale effect) of coastal communities. Our findings emphasize the need to better quantify links between markets and fishing communities through household-level surveys to implement market-based actions that could help to regulate the effect of markets on both fish stocks and fishing communities.
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Marsac, F., et al. "Seamount effect on circulation and distribution of ocean taxa in the vicinity of La Perouse, a shallow seamount in the southwestern Indian Ocean." Deep-Sea Res. Part II-Top. Stud. Oceanogr.. 176 (2020): 104806.
Résumé: The La Perouse seamount (60 m depth) has so far been poorly studied despite it being a short distance (160 km) from Reunion Island. As part of the MADRidge project, a multidisciplinary cruise was conducted to evaluate the effect of this shallow seamount on the local hydrology and ecology. Current measurements, temperature and chlorophyll-a profiles, and mesozooplankton and micronekton samples were collected between the summit and 35 km away. Micronekton data were supplemented with stomach content of pelagic top predators as well as fisheries statistics from the domestic longline fleet operating from Reunion. Vertical current profiles revealed distinct patterns between the offshore and seamount-flanked stations, giving evidence of topographical induced flow instabilities, notably on its leeward side (west) relative to the east flank. Distinct patterns in temperature and chlorophyll-a vertical profiles suggest the formation of convergent and divergent circulation cells as a result of the irregular and crescent-like summit topography. Spatial differences in zooplankton abundance were detected with higher biovolumes on the leeward flank. The overall acoustic backscatter for micronekton over the summit was weaker than offshore, but highly concentrated in the upper layer. Albacore tuna and swordfish dominate the longline catch west of Reunion, seemingly in association with a deep (900 m) topographic feature. Yet the largest catch is not directly associated with La Perouse which would be too shallow for top predators to aggregate around in the long term. Enhanced levels of phytoplankton or zooplankton enrichment at La Perouse were not demonstrated in this study, nor was there notable diversity of micronekton species. This might explain the relatively limited importance of this seamount to the tuna fisheries in this region.
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Marsac, F., et al. "Seamounts, plateaus and governance issues in the southwestern Indian Ocean, with emphasis on fisheries management and marine conservation, using the Walters Shoal as a case study for implementing a protection framework." Deep Sea Research Part II: Topical Studies in Oceanography. 176 (2020): 104715.
Résumé: There is a growing interest in the management of seamounts of the Southwestern Indian Ocean (SWIO) both in waters under national jurisdictions and in the Areas Beyond National Jurisdiction (ABNJ). New scientific knowledge has been gathered through various oceanographic cruises during the past decade, and new agreements are under consideration globally to promote conservation and sustainable use of the biodiversity in the ABNJ, where the deep sea ecosystems associated with seamounts are a growing matter of concern. SWIO seamounts have attracted the interests of fishers since the 1960s, and contracts for mining exploration have been granted recently. Seamounts are known to shelter rich, fragile and poorly resilient ecosystems whose important ecological functions are threatened by various anthropogenic pressures. Whereas many seamounts and shoals are located in national waters, many others fall in the ABNJ, with no current legal status per se. To ensure conservation of their habitats and biodiversity, it is essential that protection measures are instigated under an internationally recognized legal and institutional framework. In this paper, we review the current state of such a framework relevant to seamounts, with emphasis on fisheries and conservation in the SWIO. An emblematic seamount, the Walters Shoal, is selected as a case study to discuss how it could become a fully-protected space in the ABNJ. As a large part of the SWIO is under the mandate of the Nairobi Convention (as a Regional Sea under the auspices of UNEP), guidelines are proposed to encourage dedicated seamount governance within the framework of this Convention.
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Mendoza‐Portillo, V., et al. "Genetic diversity and structure of circumtropical almaco jack, Seriola rivoliana: tool for conservation and management." Journal of Fish Biology. 97.3 (2020): 882–894.
Résumé: The almaco jack, Seriola rivoliana, is a circumtropical pelagic fish of importance both in commercial fisheries and in aquaculture. To understand levels of genetic diversity within and among populations in the wild, population genetic structure and the relative magnitude of migration were assessed using mtDNA sequence data and single nucleotide polymorphisms (SNPs) from individuals sampled from locations in the Pacific and Atlantic Oceans. A total of 25 variable sites of cytochrome c oxidase subunit 1 and 3678 neutral SNPs were recovered. Three genetic groups were identified, with both marker types distributed in different oceanic regions: Pacific-1 in central Pacific, Pacific-2 in eastern Pacific and Atlantic in western Atlantic. Nonetheless, the analysis of SNP identified a fourth population in the Pacific coast of Baja California Sur, Mexico (Pacific-3), whereas that of mtDNA did not. This mito-nuclear discordance is likely explained by a recently diverged Pacific-3 population. In addition, two mtDNA haplogroups were found within the western Atlantic, likely indicating that the species came into the Atlantic from the Indian Ocean with historical gene flow from the eastern Pacific. Relative gene flow among ocean basins was low with rm < 0.2, whereas in the eastern Pacific it was asymmetric and higher from south to north (rm > 0.79). The results reflect the importance of assessing genetic structure and gene flow of natural populations for the purposes of sustainable management.
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Monteiro, D. A., et al. "Interactive effects of mercury exposure and hypoxia on ECG patterns in two Neotropical freshwater fish species: Matrinxa, Brycon amazonicus and traira, Hoplias malabaricus." Ecotoxicology. 29.4 (2020): 375–388.
Résumé: Hypoxia and mercury contamination often co-occur in tropical freshwater ecosystems, but the interactive effects of these two stressors on fish populations are poorly known. The effects of mercury (Hg) on recorded changes in the detailed form of the electrocardiogram (ECG) during exposure to progressive hypoxia were investigated in two Neotropical freshwater fish species, matrinxa, Brycon amazonicus and traira, Hoplias malabaricus. Matrinxa were exposed to a sublethal concentration of 0.1 mg L-1 of HgCl2 in water for 96 h. Traira were exposed to dietary doses of Hg by being fed over a period of 30 days with juvenile matrinxas previously exposed to HgCl2, resulting in a dose of 0.45 mg of total Hg per fish, each 96 h. Both species showed a bradycardia in progressive hypoxia. Hg exposure impaired cardiac electrical excitability, leading to first-degree atrioventricular block, plus profound extension of the ventricular action potential (AP) plateau. Moreover, there was the development of cardiac arrhythmias and anomalies such as occasional absence of QRS complexes, extra systoles, negative Q-, R- and S-waves (QRS complex), and T wave inversion, especially in hypoxia below O-2 partial pressures (PO2) of 5.3 kPa. Sub-chronic dietary Hg exposure induced intense bradycardia in normoxia in traira, plus lengthening of ventricular AP duration coupled with prolonged QRS intervals. This indicates slower ventricular AP conduction during ventricular depolarization. Overall, the data indicate that both acute waterborne and sub-chronic dietary exposure (trophic level transfer), at sublethal concentrations of mercury, cause damage in electrical stability and rhythm of the heartbeat, leading to myocardial dysfunction, which is further intensified during hypoxia. These changes could lead to impaired cardiac output, with consequences for swimming ability, foraging capacity, and hence growth and/or reproductive performance.
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Morato, T., et al. "Climate-induced changes in the suitable habitat of cold-water corals and commercially important deep-sea fishes in the North Atlantic." Glob. Change Biol. (2020).
Résumé: The deep sea plays a critical role in global climate regulation through uptake and storage of heat and carbon dioxide. However, this regulating service causes warming, acidification and deoxygenation of deep waters, leading to decreased food availability at the seafloor. These changes and their projections are likely to affect productivity, biodiversity and distributions of deep-sea fauna, thereby compromising key ecosystem services. Understanding how climate change can lead to shifts in deep-sea species distributions is critically important in developing management measures. We used environmental niche modelling along with the best available species occurrence data and environmental parameters to model habitat suitability for key cold-water coral and commercially important deep-sea fish species under present-day (1951-2000) environmental conditions and to project changes under severe, high emissions future (2081-2100) climate projections (RCP8.5 scenario) for the North Atlantic Ocean. Our models projected a decrease of 28%-100% in suitable habitat for cold-water corals and a shift in suitable habitat for deep-sea fishes of 2.0 degrees-9.9 degrees towards higher latitudes. The largest reductions in suitable habitat were projected for the scleractinian coral Lophelia pertusa and the octocoral Paragorgia arborea, with declines of at least 79% and 99% respectively. We projected the expansion of suitable habitat by 2100 only for the fishes Helicolenus dactylopterus and Sebastes mentella (20%-30%), mostly through northern latitudinal range expansion. Our results projected limited climate refugia locations in the North Atlantic by 2100 for scleractinian corals (30%-42% of present-day suitable habitat), even smaller refugia locations for the octocorals Acanella arbuscula and Acanthogorgia armata (6%-14%), and almost no refugia for P. arborea. Our results emphasize the need to understand how anticipated climate change will affect the distribution of deep-sea species including commercially important fishes and foundation species, and highlight the importance of identifying and preserving climate refugia for a range of area-based planning and management tools.
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Pennino, M. G., et al. "Ingestion of microplastics and occurrence of parasite association in Mediterranean anchovy and sardine." Mar. Pollut. Bull.. 158 (2020): 111399.
Résumé: We quantified the incidence of microplastics in the gut contents of the European sardine (Sardina pilchardus) and anchovy (Engraulis encrasicolus) in the Northwestern Mediterranean Sea and tested which variables influence this abundance, including the prevalence of parasites (i.e., trematoda larvae and nematodes). We detected a 58% occurrence of microplastics ingestion in sardines and a 60% in anchovies. With respect to sardines, the individuals with lower body conditions were found to have the highest microplastics ingestion probabilities, whereas in anchovies such probabilities were observed in individuals with higher gonadosomatic indices and smaller size. The areas with the highest microplastics ingestion probabilities were the Gulf of Alicante for sardines and the Gulf of Lion – Ebro Delta for anchovies. Both species showed a positive relationship between parasites and microplastics ingestion. These results highlight that both parasitism and ingestion of microplastics are concerns for the health of marine stocks and human consumers.
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Pérez-Pascual, D., et al. "Growth Performance and Adaptability of European Sea Bass (Dicentrarchus labrax) Gut Microbiota to Alternative Diets Free of Fish Products." Microorganisms. 8.9 (2020): 1346.
Résumé: Innovative fish diets made of terrestrial plants supplemented with sustainable protein sources free of fish-derived proteins could contribute to reducing the environmental impact of the farmed fish industry. However, such alternative diets may influence fish gut microbial community, health, and, ultimately, growth performance. Here, we developed five fish feed formulas composed of terrestrial plant-based nutrients, in which fish-derived proteins were substituted with sustainable protein sources, including insect larvae, cyanobacteria, yeast, or recycled processed poultry protein. We then analyzed the growth performance of European sea bass (Dicentrarchus labrax L.) and the evolution of gut microbiota of fish fed the five formulations. We showed that replacement of 15% protein of a vegetal formulation by insect or yeast proteins led to a significantly higher fish growth performance and feed intake when compared with the full vegetal formulation, with feed conversion ratio similar to a commercial diet. 16S rRNA gene sequencing monitoring of the sea bass gut microbial community showed a predominance of Proteobacteria, Firmicutes, Actinobacteria, and Bacteroidetes phyla. The partial replacement of protein source in fish diets was not associated with significant differences on gut microbial richness. Overall, our study highlights the adaptability of European sea bass gut microbiota composition to changes in fish diet and identifies promising alternative protein sources for sustainable aquafeeds with terrestrial vegetal complements.
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Pete, R., et al. "A box-model of carrying capacity of the Thau lagoon in the context of ecological status regulations and sustainable shellfish cultures." Ecological Modelling. 426 (2020): 109049.
Résumé: The decrease of microbial and nutrient inputs from the watershed has long dominated lagoon ecosystem management objectives. Phytoplankton biomass and abundance have drastically decreased for more than a decade and Zostera meadow have gradually recovered, expressing lagoon ecosystem restoration such as Thau lagoon. Do the progressive achievement of the good ecological status of the Thau lagoon possibly threatens the shellfish industry in terms of production and oyster quality, by reducing the carrying capacity? To provide answers about the right balance to be achieved between conservation and exploitation, a new numerical tool was developed to help in decision-making. We hereby propose to incorporate a Dynamic Energy Budget type shellfish production model to an existing lagoon ecosystem box-model. The influence of different scenarios of nutrient inputs (related to projections of population growth or improvement of treatment plants) and shellfish stocks were tested on oyster performances (production, oyster condition index), carrying capacity of the lagoon and ecological status indices used within the EU Water Framework Directive. Model outputs demonstrated that shellfish production was mainly controlled by nutrient inputs, which depend on hydro-meteorological variability, and specifically by phosphorus and N:P ratios of nutrient inputs. Scenarios tested, however, demonstrated smaller differences of oyster production in comparison to inter-annual variability. The overall ecological status of the lagoon remained in a “good” status with acceptable lagoon-scale phytoplankton depletion, regardless of scenarios, setting the carrying capacity of this ecosystem to be sustainable.
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Planque, B., and C. Mullon. "Modelling chance and necessity in natural systems." ICES J. Mar. Sci.. 77.4 (2020): 1573–1588.
Résumé: Nearly 30 years ago, emerged the concept of deterministic chaos. With it came sensitivity to initial conditions, nonlinearities, and strange attractors. This constituted a paradigm shift that profoundly altered how numerical modellers approached dynamic systems. It also provided an opportunity to resolve a situation of mutual misunderstanding between scientists and non-scientists about uncertainties and predictability in natural systems. Our proposition is that this issue can be addressed in an original way which involves modelling based on the principles of chance and necessity (CaN). We outline the conceptual and mathematical principles of CaN models and present an application of the model to the Barents Sea food-web. Because CaN models rely on concepts easily grasped by all actors, because they are explicit about knowns and unknowns and because the interpretation of their results is simple without being prescriptive, they can be used in a context of participatory management. We propose that, three decades after the emergence of chaos theories, CaN can be a practical step to reconcile scientists and non-scientists around the modelling of structurally and dynamically complex natural systems, and significantly contribute to ecosystem-based fisheries management.
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Przybyla, C., et al. "European sea bass (Dicentrarchus labrax) and meagre (Argyrosomus regius) fertilized egg resistance to a spacecraft launcher vibration qualifying test." Aquac. Int.. 28.6 (2020): 2465–2479.
Résumé: Food autonomy represents an essential challenge for the future Moon Village planned by the European Space Agency. Rearing fish on the moon to provide essential amino acids, omega-3 polyunsaturated fatty acids and vitamin B(12)could become a reality using integrated multi-trophic aquaculture (IMTA). The Lunar Hatch programme's goal is to fertilize farmed fish eggs on Earth that would hatch upon arrival at the lunar base. However, the vibrations from a spacecraft's launch are an unusual situation for fish eggs and may have a negative impact on them. European sea bass (Dicentrarchus labrax) and meagre (Argyrosomus regius) eggs were exposed to mechanical stresses using standard protocol performed to approve a satellite for space launch. The hatching rate was evaluated after vibration expositions at different hours post fertilization (hpf). An initial series of tests subjecting the eggs to orbital rotation demonstrated their integrity. In subsequent tests, mechanical stressors acting on the Soyuz spacecraft was simulated to test impact on fish eggs. The results showed egg robustness for European sea bass at 35 hpf (one-third of the embryo development) and 83 hpf (two thirds) and of meagre at 14 hpf (one third), with no significant difference in hatching rate compared with an unshaken control batch. European sea bass embryos and potentially other fish species with similar incubation periods (4-6 days) seem to be good candidates to surviving a spacecraft launch. This paper discusses the findings and suggests possible future research avenues.
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Ramirez-Romero, E., et al. "Phytoplankton size changes and diversity loss in the southwestern Mediterranean Sea in relation to long-term hydrographic variability." Estuar. Coast. Shelf Sci.. 235 (2020): 106574.
Résumé: Structural changes in plankton primary producers have large implications for food web dynamics, energy fluxes and the vertical export of biogenic particulate carbon. Here we examine phytoplankton data spanning the period 1993-2008 from the Bay of Tunis, southwestern Mediterranean Sea, in relation to long term hydroclimate variability. We show a conspicuous shift in the structure of the phytoplankton community characterized by an increase of small-sized species and diversity loss, revealing a dominance of smaller blooming diatoms and cyanobacteria. Such changes were concurrent with marked modifications in hydroclimatic patterns experienced in the Bay of Tunis consisting of a shift towards enhanced winter precipitation together with rising temperatures. This novel study shows an overall rise in the proportion of small phytoplankton cells and a decreasing trend in phytoplankton diversity in the southern Mediterranean area. These findings warn of a potential decline of trophic efficiency and lesser food web stability resulting from mean size reduction and the diversity loss.
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Roberts, M. J., et al. "The MADRidge project: Bio-physical coupling around three shallow seamounts in the South West Indian Ocean." Deep-Sea Res. Part II-Top. Stud. Oceanogr.. 176 (2020): 104813.
Résumé: Compared with other ocean basins, little is known scientifically about the seamounts in the Indian Ocean. Nonetheless, fishers have plundered these fragile ecosystems for decades, and now mining is becoming a reality. We introduce a multidisciplinary project referred to as MAD-Ridge that recently focused on three shallow seamounts in the South West Indian Ocean between 19 degrees S and 34 degrees S. The larger Walters Shoal (summit at 18 m) discovered in 1963 occupies the southern part of the Madagascar Ridge and has long received attention from the fishing industry, and only recently by scientists. In contrast, nothing is known of the northern region of the ridge, which is characterised by a prominent, steep-sided seamount that has a flat circular summit at 240 m and width of similar to 20 km. This seamount is some 200 km south of Madagascar and unnamed; it is referred to here as the MAD-Ridge seamount. MAD-Ridge is the shallowest of a constellation of five deeper (>1200 m) seamounts on that part of the ridge, all within the EEZ of Madagascar. It lies in a highly dynamic region at the end of the East Madagascar Current, where mesoscale eddies are produced continuously, typically as dipoles. The Madagascar Ridge appears to be an area of great productivity, as suggested by the foraging behaviour of some tropical seabirds during chick-rearing and a longline fishery that operates there. The third seamount, La Perouse, is located between Reunion Island and Madagascar. With a summit 60 m below the sea surface, La Perouse is distinct from MAD-Ridge and Walters Shoal; it is a solitary pinnacle surrounded by deep abyssal plains and positioned in an oligotrophic region with low mesoscale activities. The overall aim of the MAD-Ridge project was to examine the flow structures induced by the abrupt topographies, and to evaluate whether biological responses could be detected that better explain the observed increased in fish and top predator biomasses. The MAD-Ridge project comprised a multidisciplinary team of senior and early career scientists, along with postgraduate students from France, South Africa, Mauritius and Madagascar. The investigation was based around three cruises using the French vessels RV Antea (35 m) and RV Marion Dufresne (120 m) in September 2016 (La Perouse), November-December 2016 (MAD-Ridge) and May 2017 (Walters Shoal). This manuscript presents the rationale for the MAD-Ridge project, the background, a description of the research approach including the cruises, and a synopsis of the results gathered in the papers published in this Special Issue.
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Rufino, M. M., N. Bez, and A. Brind'Amour. "Ability of spatial indicators to detect geographic changes (shift, shrink and split) across biomass levels and sample sizes." Ecol. Indic.. 115 (2020): 106393.
Résumé: Spatial indicators are widely used to monitor species and are essential to management and conservation. In the present study, we tested the ability of 11 spatial indicators to quantify changes in species' geographic patterns: (1) spatial displacement of a patch of biomass ('shift'), (2) a spatial decrease in a patch, accompanied either by a loss of biomass ('shrink0') or (3) a relocation of the same biomass ('shrink1'), and (4) splitting of a patch into smaller patches ('split'). The geographic changes were simulated by manipulating the spatial distributions of the demersal species (observed during bottom trawl surveys). Hence, the spatial distributions of the latter being used as input data on which the manipulations were done. Additionally, other aspects of the indicators affecting the responses to the geographic changes were also tested, (1) homogeneous increase in biomass throughout the patch and (2) different sample sizes. The center of gravity (defined by latitude and longitude) was the only indicator that accurately detected the 'shift' in biomass. The index of aggregation identified a decrease in the area and biomass of the main biomass patch ('shrink0'), while the Gini index, equality area and spreading area were accurately identified a decrease in the area of the main biomass patch when total biomass did not decreased ('Shrink1'). Inertia and isotropy responded to all geographic changes, except for those in biomass or distribution area. None of the indicators successfully identified 'split' process. Likewise, one of the indicators were sensitive to a homogeneous increase in biomass or the type of spatial distribution. Overall, all indicators behaved similarly well when sample sizes exceeded 40 stations randomly located in the area. The framework developed provides an accessible and simple approach that can be used to evaluate the ability of spatial indicators to identify geographic processes using empirical data and can be extended to other indicators or geographic processes. We discuss perspectives of the development of spatial indicators especially within the application of EU's Marine Strategy Framework Directive.
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Sadoul, B., et al. "Multiple working hypotheses for hyperallometric reproduction in fishes under metabolic theory." Ecological Modelling. 433 (2020): 109228.
Résumé: Hyperallometric reproduction, whereby large females contribute relatively more to the renewal of the population than small females, is purported to be widespread in wild populations, especially in fish species. Bioenergetic models derived from a sufficiently general metabolic theory should be able to capture such a relationship but it was recently stated that no existing models adequately capture hyperallometric reproduction. If this were true it would seriously challenge our capacity to develop robust predictions of the life history and population dynamics in changing environments for many species. Here, using the European sea bass (Dicentrarchus labrax) as a test case, we demonstrate multiple ways that hyperallometric reproduction in a population may emerge from the Dynamic Energy Budget (DEB) theory, some inherently related to the metabolism and life history and others related to plastic or genetically based intraspecific variation. In addition, we demonstrate an empirical and modelled hypoallometric scaling of reproduction in this species when environment is controlled. This work shows how complex metabolic responses may underlie apparently simple relationships between weight and reproduction in the wild and provides new and testable hypotheses regarding the factors driving reproductive scaling relationships found in the wild.
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Salvetat, J., et al. "In situ target strength measurement of the black triggerfish Melichthys niger and the ocean triggerfish Canthidermis sufflamen." Mar. Freshw. Res.. 71.9 (2020): 1118–1127.
Résumé: Triggerfish are widely distributed in tropical waters where they play an important ecological role. The black triggerfish Melichthys niger may be the dominant species around oceanic tropical islands, whereas pelagic triggerfish, such as the ocean triggerfish Canthidermis sufflamen, can assemble around fish aggregating devices (FADs) where they are a common bycatch of tuna fisheries. In this study we combined acoustic and optical recordings to provide the first in situ target strength (TS) measurement of black and ocean triggerfish. Data were collected in the Archipelago of Fernando de Noronha off north-east Brazil. The mean TS of a 27.8-cm-long black triggerfish at 70 and 200 kHz was -39.3 dB re 1 m(2) (CV = 14.0%) and -38.9 dB re 1 m(2) (CV = 14.4%) respectively. The mean TS values of ocean triggerfish (with a size range of 39-44 cm) at 70 and 200 kHz were -36.0 dB re 1 m(2) (CV = 15.7%) and -33.3 dB re 1 m(2) (CV = 14.0%) respectively. This work opens up the field for acoustic biomass estimates. In addition, we have shown that TS values for ocean triggerfish are within the same range as those of small tunas. Therefore, acoustic data transmitted from FADs equipped with echosounders can introduce a bias in tuna acoustic biomass estimation and lead to increased rates of bycatch.
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Schickele, A., et al. "Modelling European small pelagic fish distribution: Methodological insights." Ecological Modelling. 416 (2020): 108902.
Résumé: The distribution of marine organisms is strongly influenced by climatic gradients worldwide. The ecological niche (sensu Hutchinson) of a species, i.e. the combination of environmental tolerances and resources required by an organism, interacts with the environment to determine its geographical range. This duality between niche and distribution allows climate change biologists to model potential species’ distributions from past to future conditions. While species distribution models (SDMs) have been intensively used over the last years, no consensual framework to parametrise, calibrate and evaluate models has emerged. Here, to model the contemporary (1990–2017) spatial distribution of seven highly harvested European small pelagic fish species, we implemented a comprehensive and replicable numerical procedure based on 8 SDMs (7 from the Biomod2 framework plus the NPPEN model). This procedure considers critical issues in species distribution modelling such as sampling bias, pseudo-absence selection, model evaluation and uncertainty quantification respectively through (i) an environmental filtration of observation data, (ii) a convex hull based pseudo-absence selection, (iii) a multi-criteria evaluation of model outputs and (iv) an ensemble modelling approach. By mitigating environmental sampling bias in observation data and by identifying the most ecologically relevant predictors, our framework helps to improve the modelling of fish species’ environmental suitability. Not only average temperature, but also temperature variability appears as major factors driving small pelagic fish distribution, and areas of highest environmental suitability were found along the north-western Mediterranean coasts, the Bay of Biscay and the North Sea. We demonstrate in this study that the use of appropriate data pre-processing techniques, an often-overlooked step in modelling, increase model predictive performance, strengthening our confidence in the reliability of predictions.
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Schiettekatte, N. M. D., et al. "Nutrient limitation, bioenergetics and stoichiometry: A new model to predict elemental fluxes mediated by fishes." Funct. Ecol.. 34.9 (2020): 1857–1869.
Résumé: Energy flow and nutrient cycling dictate the functional role of organisms in ecosystems. Fishes are key vectors of carbon (C), nitrogen (N) and phosphorus (P) in aquatic systems, and the quantification of elemental fluxes is often achieved by coupling bioenergetics and stoichiometry. While nutrient limitation has been accounted for in several stoichiometric models, there is no current implementation that permits its incorporation into a bioenergetics approach to predict ingestion rates. This may lead to biased estimates of elemental fluxes. Here, we introduce a theoretical framework that combines stoichiometry and bioenergetics with explicit consideration of elemental limitations. We examine varying elemental limitations across different trophic groups and life stages through a case study of three trophically distinct reef fishes. Further, we empirically validate our model using an independent database of measured excretion rates. Our model adequately predicts elemental fluxes in the examined species and reveals species- and size-specific limitations of C, N and P. In line with theoretical predictions, we demonstrate that the herbivoreZebrasoma scopasis limited by N and P, and all three fish species are limited by P in early life stages. Further, we show that failing to account for nutrient limitation can result in a greater than twofold underestimation of ingestion rates, which leads to severely biased excretion rates. Our model improved predictions of ingestion, excretion and egestion rates across all life stages, especially for fishes with diets low in N and/or P. Due to its broad applicability, its reliance on many parameters that are well-defined and widely accessible, and its straightforward implementation via the accompanyingr-packagefishflux, our model provides a user-friendly path towards a better understanding of ecosystem-wide nutrient cycling in the aquatic biome. A freePlain Language Summarycan be found within the Supporting Information of this article.
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Soares, A., et al. "Feeding habits and population aspects of the spotted goatfish, Pseudupeneus maculatus (Perciformes: Mullidae), on the continental shelf of northeast Brazil." Sci. Mar.. 84.2 (2020): 119–131.
Résumé: This study provides information about the feeding habits, population aspects and spatial distribution of the spotted goatfish, Pseudupeneus maculatus, along the coast of the tropical Brazilian continental shelf. Distribution patterns are described using length frequencies and catch rates. Stable isotope ratios of carbon (delta C-13) and nitrogen (delta N-15), along with stomach contents, were analysed to determine the diet of the spotted goatfish. Multivariate analysis and numerical indicators of the diet, such as numerical frequency. frequency of occurrence and weight percentage, were computed to evaluate the diet composition. The mean trophic position was defined using both stable isotope ratios and stomach content analysis. The length at first maturity for the species was determined as 13.7 cm. A slight pattern in size distribution was observed, with mean size increasing with depth along the shelf. The diet was mainly composed of crustaceans, teleosts and Polychaeta. No clear dietary difference was found between habitat types, water depth or latitude. Both trophic positions estimated by stable isotopes and stomach contents analysis ranged between levels 3 and 4. P. maculatus was found to be feeding on many rare and infrequent prey items, classifying it as a generalist zoobenthivorous predator, probably due to its efficient search strategy.
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Su, G., S. Villeger, and S. Brosse. "Morphological sorting of introduced freshwater fish species within and between donor realms." Glob. Ecol. Biogeogr. (2020).
Résumé: Aim: To determine which morphological characteristics make a fish species a good candidate for introduction and establishment, we tested whether (a) introduced species differ in morphology from non-introduced species (species only existing in native areas and not introduced to new areas) in each donor assemblage (biogeographic realm fauna); (b) within the introduced species, the morphology of established species (self-sustaining introduced species) differs from that of the non-established species; (c) within the established species, those exported out of their native realm have more extreme morphological traits than those translocated within their native realm. Major taxa studied: Freshwater fish. Location: Global. Time period: 1960s-2010s. Methods: We used a global database of freshwater fishes from the six realms. Ten morphological traits were measured on 9,150 species. Principal component analysis was conducted to combine the 10 traits into a multidimensional morphospace. We used permutational multivariate analysis of variance (PERMANOVA) and permutational analysis for the multivariate homogeneity of dispersions (PERMDISP2) to compare the distribution of species groups in the morphospace and Kolmogorov-Smirnov tests to compare their distributions on principal component (PC) axes. Results: The morphology of introduced species differed from that of non-introduced species in all the six biogeographic realms. Among introduced species, established species had more extreme morphological traits than non-established species in most realms. Among established species, exported species had more extreme morphological traits than translocated species. Main conclusions: Morphological differences between introduced and nonintroduced species rely on an anthropogenic trait selection for fisheries and angling, leading to the preference for the introduction of predators with large and laterally compressed bodies. Established introduced species represent a small subset of introduced species morphologies, with these species having more extreme morphological traits, probably making them more efficient in particular habitats than their non-established counterparts. This was particularly marked for fish morphologies adapted to lentic waters. Such a trend was apparent for exported species, which have more extreme traits than translocated species.
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Travassos Tolotti, M., et al. "Association dynamics of tuna and purse seine bycatch species with drifting fish aggregating devices (FADs) in the tropical eastern Atlantic Ocean." Fish Res.. 226 (2020): 105521.
Résumé: Several pelagic fish species are known to regularly associate with floating objects in the open ocean, including commercially valuable species. The tuna purse seine industry takes advantage of this associative behavior and has been increasingly deploying free-drifting man-made floating objects, also known as fish aggregating devices (FADs). Using passive acoustic telemetry, this study describes the associative dynamics of the main targeted tropical tuna species (Thunnus albacores, T. obelus and Katsuwonus pelamis), as well as three major bycatch species, silky shark (Carcharhinus falciformis), rainbow runner (Elagatis bipinmdata) and oceanic triggerfish (Canthidermis maculata). Short-term excursions away from the FADs were frequently performed by all tuna species as well by silky sharks. These excursions were characterized by a marked diel pattern, mainly occurring during nighttime. Rainbow runners and oceanic triggerfish were much more present at the FADs and rarely performed excursions. Average continuous residence times (CRTs) ranged from 6 days, for silky shark, up to 25 days for bigeye tuna. Similar to silky shark, average CRTs for skipjack tuna and oceanic triggerfish were less than 10 days. For yellowfin tuna and rainbow runner, CRTs averaged 19 and 16 days, respectively. Bigeye and yellowfin tuna remained associated to a single drifting FAD for a record of 55 days and 607 km traveled.
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Vandeputte, M., et al. "Low temperature has opposite effects on sex determination in a marine fish at the larval/postlarval and juvenile stages." Ecology and Evolution (2020).
Résumé: Temperature-dependent sex determination (TSD) can be observed in multiple reptile and fish species. It is adaptive when varying environmental conditions advantage either males or females. A good knowledge of the thermosensitive period is key to understand how environmental changes may lead to changes in population sex ratio. Here, by manipulating temperature during development, we confirm that cold temperature (16°C) increases the proportion of fish that develop as females in European sea bass (Dicentrarchus labrax) until 56 days posthatching, but show that it has an opposite effect at later stages, with the proportion of males reaching 90% after 230 days at 16°C. This is the first observation of opposite effects of temperature at different time periods on the sex ratio of a vertebrate. Our results highlight the potential complexity of environmental effects on sex determination.
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2019 |
Alfonso, S., et al. "Examining multi- and transgenerational behavioral and molecular alterations resulting from parental exposure to an environmental PCB and PBDE mixture." Aquat. Toxicol.. 208 (2019): 29–38.
Résumé: Polychlorinated biphenyls (PCBs) and polybrominated diphenyl ethers (PBDEs) are persistent organic pollutants extensively used during the 20th century and still present in aquatic environments despite their ban. Effects of exposure to these compounds over generations are poorly documented. Therefore, our aims were to characterize behavioral responses and underlying molecular mechanisms in zebrafish exposed to an environmentally relevant mixture of PCBs and PBDEs as well as in four unexposed offspring generations. Zebrafish (F0) were chronically exposed from the first meal onward to a diet spiked with a mixture containing 22 PCB and 7 PBDE congeners in proportions and concentrations reflecting environmental situations (Sigma PCBs = 1991 and Sigma PBDEs = 411 ng/g). Four offspring generations (F1 to F4) were obtained from this F0 and were not further exposed. Behavior was assessed at both larval and adult stages. Mechanisms related to behavioral defects (habenula maturation and c-fos transcription) and methylation (dnmts transcription) were monitored in larvae. Exposed adult F0 as well as F1 and F3 adults displayed no behavioral change while F2 expressed anxiety-like behavior. Larval behavior was also disrupted, Le. hyperactive after light to dark transition in F1 or hypoactive in F2, F3 and F4. Behavioral disruptions may be related to defect in habenula maturation (observed in F1) and change in c-fos transcription (observed in F1 and F2). Transcription of the gene encoding DNA methyltransferase (dnmt3ba) was also modified in all generations. Our results lead us to hypothesize that chronic dietary exposure to an environmentally relevant mixture of PCB and PBDE triggers multigenerational and transgenerational molecular and behavioral disruptions in a vertebrate model.
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Annasawmy, P., et al. "Micronekton distributions and assemblages at two shallow seamounts of the south-western Indian Ocean: Insights from acoustics and mesopelagic trawl data." Prog. Oceanogr.. 178 (2019): 102161.
Résumé: Micronekton distributions and assemblages were investigated at two shallow seamounts of the south-western Indian Ocean using a combination of trawl data and a multi-frequency acoustic visualisation technique. La Pa rouse seamount (summit depth similar to 60 m) is located on the outskirts of the oligotrophic Indian South Subtropical Gyre (ISSG) province with weak mesoscale activities and low primary productivity all year round. The “MAD-Ridge” seamount (thus termed in this study; similar to 240 m) is located in the productive East African Coastal (EAFR) province with high mesoscale activities to the south of Madagascar. Higher micronekton species richness was recorded at MAD-Ridge compared to La Perouse. Resulting productivity at MAD-Ridge seamount was likely due to the action of mesoscale eddies advecting productivity and larvae from the Madagascar shelf rather than local dynamic processes such as Taylor column formation. Mean micronekton abundance/biomass, as estimated from mesopelagic trawl catches, were lower over the summit compared to the vicinity of the seamounts, due to net selectivity and catchability and depth gradient on micronekton assemblages. Mean acoustic densities in the night shallow scattering layer (SSL: 10-200 m) over the summit were not significantly different compared to the vicinity (within 14 nautical miles) of MAD-Ridge. At La Perouse and MAD-Ridge, the night and day SSL were dominated by common diel vertically migrant and non-migrant micronekton species respectively. While seamount-associated mesopelagic fishes such as Diaphus suborbitalis (La Perouse and MAD-Ridge) and Benthosema fibula= performed diel vertical migrations (DVM) along the seamounts' flanks, seamount-resident benthopelagic fishes, including Cookeolus japonicus (MAD-Ridge), were aggregated over MAD-Ridge summit. Before sunrise, mid-water migrants initiated their vertical migration from the intermediate to the deep scattering layer (DSL, La Perouse: 500-650 m; MAD-Ridge: 400-700 m) or deeper. During sunrise, the other taxa contributing to the night SSL exhibited a series of vertical migration events from the surface to the DSL or deeper until all migrants have reached the DSL before daytime. Possible mechanisms leading to the observed patterns in micronekton vertical and horizontal distributions are discussed. This study contributes to a better understanding of how seamounts influence the DVM, horizontal distribution and community composition of micronekton and seamount-associated/resident species at two poorly studied shallow topographic features in the south-western Indian Ocean.
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Ba, A., et al. "The potential impact of marine protected areas on the Senegalese sardinella fishery." Ocean Coastal Manage.. 169 (2019): 239–246.
Résumé: In the early 2000s, Senegal set up several Marine Protected Areas (MPAs) along its coastal zone with the purpose of biodiversity conservation and to support sustainable management of fisheries. However, the impact of MPAs may vary according to the type of fisheries. In Senegal, the sardinella fishery accounts for 70% of total catches. This fishery is of crucial importance for national food security and employment. Given this importance, it is necessary to evaluate the impact of MPAs, often being considered as a tool for fisheries management. An analytical, dynamic and spatial bio-economic model of sardinella fishery, considering fish and fisher migration, has been developed and scenarios over forty years have been analyzed. The results show that the fishery is economically overexploited and that Senegal could lose about 11.6 billion CFA over forty years of exploitation, i.e. 290 million CFA per year. To achieve an optimal level of exploitation, it would be necessary to halve the current fishing capacity. Implementing MPAs for 10, 20 and 30% of the Senegalese exclusive economic zone lead to slight increases in biomass (1%) and rent (5-11%). In addition, spatio-temporal closures can lead to increased exploitation in unclosed areas, due to the absence of enforcement. Achieving target 11 of the Aichi Convention, i.e., 10% of coastal and marine areas protected per country, will have a reserve effect on the resource but also only lead to weak improvements in economic indicators for the Senegalese fishery. Finally, because the sardinella resource is shared among many countries of the Sub-Regional Fisheries Commission (SRFC), a sub-regional cooperation is necessary for a sustainable management.
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Bănaru, D., et al. "Implementation of an end-to-end model of the Gulf of Lions ecosystem (NW Mediterranean Sea). I. Parameterization, calibration and evaluation." Ecological Modelling. 401 (2019): 1–19.
Résumé: An end-to-end model named OSMOSE-GoL has been built for the Gulf of Lions, the main French Mediterranean fishing area. This spatialized dynamic model links the coupled hydrodynamic and biogeochemical model Eco3M-S/SYMPHONIE (LTL – low trophic level model) to OSMOSE (HTL – high trophic level model). It includes 15 compartments of living organisms, five from the LTL model (i.e. nanophytoplankton, microphytoplankton, nanozooplankton, microzooplankton and mesozooplankton) and ten from the HTL model (northern krill, southern shortfin squid, European pilchard, European anchovy, European sprat, Atlantic horse mackerel, Atlantic mackerel, blue whiting, European hake and Atlantic bluefin tuna). With the exception of northern krill and European sprat, all HTL species are commercially exploited and undergo fisheries mortality pressure. The modeled species represent more than 70% of annual catches in this area. This paper presents the parameterization, calibration and evaluation of this model with satellite data for phytoplankton and with biomass, landings, diet and trophic level data for HTL groups. For most species, the diets in output of OSMOSE-GoL are similar to field and literature data in terms of dominant prey groups and species. However, some differences were observed. Various reasons may explain the mismatch between the modeled diet and field data. Benthic prey sometimes observed in the stomach content of the HTL predators were not modeled in OSMOSE-GoL. Field studies were carried out at specific periods and locations, while our data concern the period 2001–2004 and the entire modeled domain. Inter- and intra-annual variations in spatial distribution and density of prey may also explain these differences. The model estimates trophic level values similar to those cited in the literature for all the HTL compartments. These values are also close to the trophic levels estimated by a previous Ecopath model for the same area and period. Even though some improvements are still possible, this model may already be of use to explore fishery or Marine Protected Areas scenarios for socio-ecosystem management issues.
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Benedetti, F., et al. "Climate change may have minor impact on zooplankton functional diversity in the Mediterranean Sea." Divers. Distrib.. 25.4 (2019): 568–581.
Résumé: Aim To assess the impact of climate change on the functional diversity of marine zooplankton communities. Location The Mediterranean Sea. Methods We used the functional traits and geographic distributions of 106 copepod species to estimate the zooplankton functional diversity of Mediterranean surface assemblages for the 1965-1994 and 2069-2098 periods. Multiple environmental niche models were trained at the global scale to project the species habitat suitability in the Mediterranean Sea and assess their sensitivity to climate change predicted by several scenarios. Simultaneously, the species traits were used to compute a functional dendrogram from which we identified seven functional groups and estimated functional diversity through Faith's index. We compared the measured functional diversity to the one originated from null models to test if changes in functional diversity were solely driven by changes in species richness. Results All but three of the 106 species presented range contractions of varying intensity. A relatively low decrease of species richness (-7.42 on average) is predicted for 97% of the basin, with higher losses in the eastern regions. Relative sensitivity to climate change is not clustered in functional space and does not significantly vary across the seven copepod functional groups defined. Changes in functional diversity follow the same pattern and are not different from those that can be expected from changes in richness alone. Main conclusions Climate change is not expected to alter copepod functional traits distribution in the Mediterranean Sea, as the most and the least sensitive species are functionally redundant. Such redundancy should buffer the loss of ecosystem functions in Mediterranean zooplankton assemblages induced by climate change. Because the most negatively impacted species are affiliated to temperate regimes and share Atlantic biogeographic origins, our results are in line with the hypothesis of increasingly more tropical Mediterranean communities.
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Bitetto, I., et al. "Modelling spatio-temporal patterns of fish community size structure across the northern Mediterranean Sea: an analysis combining MEDITS survey data with environmental and anthropogenic drivers." Sci. Mar.. 83 (2019): 141–151.
Résumé: The state of marine systems subject to natural or anthropogenic impacts can be generally summarized by suites of ecological indicators carefully selected to avoid redundancy. Length-based indicators capture the status of fish community structure, fulfilling the Marine Strategy Framework Directive (MSFD) requirement for Descriptor 3 (status of commercial fish species). Although the MSFD recommends the development of regional indicators, a comparison among alternative length-based indicators is so far missing for the Mediterranean Sea. Using principal component analysis and dynamic factor analysis, we identified the most effective subset of length-based indicators, whether or not based on maximum length. Indicator trends and lime series of fishing effort and environmental variables are also compared in order to highlight the individual and combined capability of indicators to track system changes across geographical sub-areas. Two indicators, typical length and mean maximum length, constitute the smallest set of non-redundant indicators, capturing together 87.45% of variability. Only in combination can these indicators disentangle changes in the fish community composition from modifications of size structure. Our study supports the inclusion of typical length among the regional MSFD Descriptor 3 indicators for the Mediterranean Sea. Finally, we show dissimilarity between the western and eastern-central Mediterranean, suggesting that there are sub-regional differences in stressors and community responses.
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Blanchard, F., C. Chaboud, and O. Thebaud. "Back to the future: A retrospective assessment of model-based scenarios for the management of the shrimp fishery in French Guiana facing global change." Nat. Resour. Model. (2019): e12232.
Résumé: While the number of models dedicated to predicting the consequences of alternative resource management strategies has increased, instances in which authors look back at past predictions to learn from discrepancies between these and observed developments are scarce. In the past decades, the French Guiana shrimp fishery has experienced shrimp market globalization and decreasing levels of shrimp recruitment due to environmental changes. In 2006, a bio-economic model of this fishery was developed to simulate its possible responses to economic and environmental scenarios up to 2016. Here, we compare here these predictions to the observed trajectories. While the number of active vessels corresponds to that which was predicted, the estimated shrimp stock does not. Important driving factors had not been anticipated, including a general strike, natural disasters, and the end of the global financial crisis. These results show the importance of participative approaches involving stakeholders in the co-construction and shared representation of scenarios. Recommendations for resource managers Effective fisheries resources management and a fortiori, the capacity of the fisheries to adapt to global change, requires understanding of both ecological and economics dynamics. The temporal trajectory of the trawling shrimp fisheries has been well monitored, and the decline of both stock and fleet is understood regarding ecological and economic changes: Changes in the environmental conditions of shrimp recruitment, and oil price increase and selling price decrease. However, our bio-economic modeling work showed that, even with a good understanding of the dynamics explaining past trajectories, unpredictable events (strike, natural disasters horizontal ellipsis ) have acted as other key driving factors altering the capacity of the model to represent possible futures. These results led us to recommend a better integration of the expertise of social and political scientists in developing models of bio-economic systems to increase the quality of scenario predictions, and to argue for more participative approaches involving the stakeholders.
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Brehmer, P., et al. "Vessel Avoidance Response: A Complex Tradeoff Between Fish Multisensory Integration and Environmental Variables." Rev. Fish. Sci. Aquac... 27.3 (2019): 380–391.
Résumé: The avoidance reaction by fish in front of an approaching vessel is a major source of bias in direct biomass assessment and ecological studies based on fisheries acoustics data. An experiment was carried out to compare echosounder data obtained using a small speedboat and a research fisheries vessel generating significant higher noise above conventional reduced-noise standard. The results show that there was no significant difference between the individual fish target strength distributions, and the numbers of schools recorded by both boats, these schools having similar areas and perimeters. However, the schools detected by the noisier vessel were significantly deeper, and unexpectedly had a significantly higher energy level. These findings suggest that noise-reduced vessels trigger a different vessel avoidance reaction. The noise-reduction standard is not sufficient to reduce avoidance behavior. It is also to take into consideration the ambient noise, which could impair perception of the platform by the fish, and the probability that the acoustic stimuli could be less important than visual perception under some local conditions. The paper introduces the concept of partial avoidance and presents a conceptual diagram of the strength of the avoidance reaction. Last, it is not recommended, because of noise reasons, that vessels routinely used for pelagic stock assessment surveys be changed. Indeed standardized time series, which could be disrupted when switching to a new vessel, are more important than the hypothetical gain from change to quieter vessels. Obviously, all long-term surveys must change vessels; best practice will be to estimate the vessel effect before any change to avoid disrupting the time series and/or perform vessel intercalibration surveys.
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Carbonara, P., et al. "Explorative analysis on red mullet (Mullus barbatus) ageing data variability in the Mediterranean." Sci. Mar.. 83 (2019): 271–279.
Résumé: The uncertainty in age estimation by otolith reading may be at the root of the large variability in red mullet (Mullus barbatus) growth models in the Mediterranean. In the MEDITS survey, red mullet age data are produced following the same sampling protocol and otolith reading methodology. However, ageing is assigned using different interpretation schemes, including variations in theoretical birthdate and number of false rings considered, in addition to differences in the experience level of readers. The present work analysed the influence of these variations and the geographical location of sampling on red mullet ageing using a multivariate approach (principal component analysis). Reader experience was the most important parameter correlated with the variability. The number of rings considered false showed a significant effect on the variability in the first age groups but had less influence on the older ones. The effect of the theoretical birthdate was low in all age groups. Geographical location had a significant influence, with longitude showing greater effects than latitude. In light of these results. workshops, exchanges and the adoption of a common ageing protocol based on age validation studies are considered fundamental tools for improving precision in red mullet ageing.
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Carvalho, P. G., et al. "Optimized fishing through periodically harvested closures." J. Appl. Ecol.. 56.8 (2019): 1927–1936.
Résumé: Periodically harvested closures are a widespread, centuries-old form of fisheries management that protects fish between pulse harvests and can generate high harvest efficiency by reducing fish wariness of fishing gear. However, the ability for periodic closures to also support high fisheries yields and healthy marine ecosystems is uncertain, despite increased promotion of periodic closures for managing fisheries and conserving ecosystems in the Indo-Pacific. We developed a bioeconomic fisheries model that considers changes in fish wariness, based on empirical field research, and quantified the extent to which periodic closures can simultaneously maximize harvest efficiency, fisheries yield and conservation of fish stocks. We found that periodic closures with a harvest schedule represented by closure for one to a few years between a single pulse harvest event can generate equivalent fisheries yield and stock abundance levels and greater harvest efficiency than achievable under conventional fisheries management with or without a permanent closure. Optimality of periodic closures at maximizing the triple objective of high harvest efficiency, high fisheries yield, and high stock abundance was robust to fish life history traits and to all but extreme levels of overfishing. With moderate overfishing, there emerged a trade-off between periodic closures that maximized harvest efficiency and no-take permanent closures that maximized yield; however, the gain in harvest efficiency outweighed the loss in yield for periodic closures when compared with permanent closures. Only with extreme overfishing, where fishing under nonspatial management would reduce the stock to <= 18% of its unfished level, was the harvest efficiency benefit too small for periodic closures to best meet the triple objective compared with permanent closures. Synthesis and applications. We show that periodically harvested closures can, in most cases, simultaneously maximize harvest efficiency, fisheries yield, and fish stock conservation beyond that achievable by no-take permanent closures or nonspatial management. Our results also provide design guidance, indicating that short closure periods between pulse harvest events are most appropriate for well-managed fisheries or areas with large periodic closures, whereas longer closure periods are more appropriate for small periodic closure areas and overfished systems.
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Cormier, B., et al. "Multi-Laboratory Hazard Assessment of Contaminated Microplastic Particles by Means of Enhanced Fish Embryo Test With the Zebrafish (Danio rerio)." Front. Environ. Sci.. 7 (2019): 135.
Résumé: As wide-spread pollutants in the marine environment, microplastics (MPs) have raised public concern about potential toxic effects in aquatic organisms, and, among others, MPs were suspected to act as a vector for organic pollutants to biota. The purpose of the present study was to investigate effects by three model pollutants, oxybenzone (BP3), benzo[a] pyrene (BaP), and perfluorooctane sulfonate (PFOS) adsorbed to polyethylene MPs on the basis of a standard assay, the acute fish embryo toxicity test (FET; OECD TG 236) with zebrafish (Danio rerio) supplemented by additional endpoints such as induction of ethoxyresorufin-O-deethylase (EROD) activity, modification of cyp1a gene transcription and changes in larval swimming behavior. FET assays were performed in three laboratories using slightly different husbandry and exposure conditions, which, however, were all fully compatible with the limits defined by OECD TG 236. This allowed for testing of potential changes in the FET assay due to protocol variations. The standard endpoints of the FET (acute embryotoxicity) did not reveal any acute toxicity for both virgin MPs and MPs spiked with BP3, BaP, and PFOS. With respect to sublethal endpoints, EROD activity was increased after exposure to MPs spiked with BP3 (3 h pulse) and MPs spiked with BaP (96 h continuous exposure). Cyp1a transcription was increased upon exposure to MPs spiked with BP3 or BaP. For the selected combination of MPs particles and contaminants, the basic FET proved not sensitive enough to reveal effects of (virgin and spiked) MPs. However, given that the FET can easily be supplemented by a broad variety of more subtle and sensitive endpoints, an enhanced FET protocol may provide a relevant approach with developmental stages of a vertebrate animal model, which is not protected by current EU animal welfare legislation (Directive EU 2010/63).
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Damsgaard, C., et al. "Evolutionary and cardio-respiratory physiology of air-breathing and amphibious fishes." Acta Physiol. (2019): Unsp-e13406.
Résumé: Air-breathing and amphibious fishes are essential study organisms to shed insight into the required physiological shifts that supported the full transition from aquatic water-breathing fishes to terrestrial air-breathing tetrapods. While the origin of air-breathing in the evolutionary history of the tetrapods has received considerable focus, much less is known about the evolutionary physiology of air-breathing among fishes. This review summarizes recent advances within the field with specific emphasis on the cardiorespiratory regulation associated with air-breathing and terrestrial excursions, and how respiratory physiology of these living transitional forms are affected by development and personality. Finally, we provide a detailed and re-evaluated model of the evolution of air-breathing among fishes that serves as a framework for addressing new questions on the cardiorespiratory changes associated with it. This review highlights the importance of combining detailed studies on piscine air-breathing model species with comparative multi-species studies, to add an additional dimension to our understanding of the evolutionary physiology of air-breathing in vertebrates.
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Diaz, F., et al. "Implementation of an end-to-end model of the Gulf of Lions ecosystem (NW Mediterranean Sea). II. Investigating the effects of high trophic levels on nutrients and plankton dynamics and associated feedbacks." Ecological Modelling. 405 (2019): 51–68.
Résumé: The end-to-end OSMOSE-GoL model parameterized, calibrated and evaluated for the Gulf of Lions ecosystem (Northwestern Mediterranean Sea) has been used to investigate the effects of introducing two-ways coupling between the dynamics of Low and High Trophic Level groups. The use of a fully dynamic two-ways coupling between the models of Low and High Trophic Levels organisms provided some insights in the functioning of the food web in the Gulf of Lions. On the whole microphytoplankton and mesozooplankton were found to be preyed upon by High Trophic Levels planktivorous groups at rates lower than 20% and 30% of their respective natural mortality rates, but these relatively low rates involved some important alterations in the infra-seasonal and annual cycles of both High and Low Trophic Levels groups. They induced significant changes in biomass, fisheries landings and food web interactions by cascading effects. Spatial differential impacts of High Trophic Levels predation on plankton are less clear except in areas in which primary productivity is high. Higher predation rates on plankton groups were encountered within the area of the Rhone river’s influence and in areas associated to the presence of mesoscale eddies in the Northwestern part of the Gulf of Lions, especially. Generally, the pressure of the High Trophic Levels predation was the highest in areas of highest biomass whatever the plankton group considered. The two-ways coupling between Low and High Trophic Levels models revealed both bottom-up and top-down controls in the ecosystem with effects on planktivorous species similar to those observed in the field. The use of the end-to-end model enabled to propose a set of potential mechanisms that may explain the observed decrease in small pelagic catches by the French Mediterranean artisanal fisheries over the last decade.
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Donati, G. F. A., et al. "A process-based model supports an association between dispersal and the prevalence of species traits in tropical reef fish assemblages." Ecography (2019).
Résumé: Habitat dynamics interacting with species dispersal abilities could generate gradients in species diversity and prevalence of species traits when the latter are associated with species dispersal potential. Using a process-based model of diversification constrained by a dispersal parameter, we simulated the interplay between reef habitat dynamics during the past 140 million years and dispersal, shaping lineage diversification history and assemblage composition globally. The emerging patterns from the simulations were compared to current prevalence of species traits related to dispersal for 6315 tropical reef fish species. We found a significant spatial congruence between the prevalence of simulated low dispersal values and areas with a large proportion of species characterized by small adult body size, narrow home range mobility behaviour, pelagic larval duration shorter than 21 days and diurnal activity. Species characterized by such traits were found predominantly in the Indo-Australian Archipelago and the Caribbean Sea. Furthermore, the frequency distribution of the dispersal parameter was found to match empirical distributions for body size, PLD and home range mobility behaviour. Also, the dispersal parameter in the simulations was associated to diversification rates and resulted in trait frequency matching empirical distributions. Overall, our findings suggest that past habitat dynamics, in conjunction with dispersal processes, influenced diversification in tropical reef fishes, which may explain the present-day geography of species traits.
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Escalle, L., et al. "Catch and bycatch captured by tropical tuna purse-seine fishery in whale and whale shark associated sets: comparison with free school and FAD sets." Biodivers. Conserv.. 28.2 (2019): 467–499.
Résumé: In an ecosystem approach to fisheries management (EAFM) framework of the tuna purse-seine fishery, the assessment of target species, but also that of bycatch species, is essential. In the Atlantic and Indian oceans, purse-seine nets are sometimes set around tuna schools associated with whale sharks and baleen whales, although less frequently than around free-swimming tuna schools or those associated with fish aggregating devices (FAD). However, knowledge on the targeted catch and bycatch in these megafauna associated fishing sets is still relatively limited. Therefore, the aims of this study were to assess species and size composition of the target tuna species, as well as the diversity of bycatch species in whale and whale shark associated sets. Whale associated sets were found to be very similar to free school sets in terms of tuna catch (large yellowfin tuna), bycatch occurrence (presence in half the sets) and species assemblage (alpha and beta diversity). Whale shark associated sets were intermediate between FAD and free school sets, with tuna catch (skipjack and juvenile yellowfin) closer to FAD than to free school sets. However, the presence of large yellowfin, the bycatch composition (with almost no finfish, abundantly captured in FAD sets) and the species assemblage showed similarity with free school sets. This study highlights the need for an EAFM in the tuna purse-seine fishery by providing knowledge on pelagic multi-specific catches and bycatches.
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Fernandez-Arcaya, U., et al. "Large-scale distribution of a deep-sea megafauna community along Mediterranean trawlable grounds." Sci. Mar.. 83 (2019): 175–187.
Résumé: The large-scale distribution pattern of megafauna communities along the Mediterranean middle slope was explored. The study was conducted between 500 and 800 m depth where deep-water fishery occurs. Although community studies carried out deeper than 500 m are partly available for some geographic areas, few large-scale comparative studies have been carried out. Within the framework of the MEDITS survey programme, we compared the megafauna community structure in ten geographical sub-areas (GSAs) along the Mediterranean coasts. Additionally, the spatial distribution of fishing was analysed using vessel monitoring by satellite information. Overall, the community showed a significant difference between sub-areas, with a decreasing eastward pattern in abundance and biomass. Longitude was the main factor explaining variation among sub-areas (by generalized additive models). However, we found a region which did not follow the general pattern. GSA 6 (northern Spain) showed significantly lower abundance and a different composition structure to the adjacent areas. The decrease in community descriptors (i.e. abundance and biomass) in this area is probably a symptom of population changes induced by intense fishery exploitation. Overall, a combination of environmental variables and human-induced impacts appears to influence the bentho-pelagic communities along the slope areas of the Mediterranean.
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Follesa, M. C., et al. "Spatial variability of Chondrichthyes in the northern Mediterranean." Sci. Mar.. 83 (2019): 81–100.
Résumé: Thanks to the availability of the MEDITS survey data, a standardized picture of the occurrence and abundance of demersal Chondrichthyes in the northern Mediterranean has been obtained. During the spring-summer period between 2012 and 2015, 41 Chondrichthyes, including 18 sharks (5 orders and 11 families). 22 batoids (3 orders and 4 families) and 1 chimaera, were detected from several geographical sub-areas (GSAs) established by the General Fisheries Commission for the Mediterranean. Batoids had a preferential distribution on the continental shelf (10-200 m depth). while shark species were more frequent on the slope (200-800 m depth). Only three species, the Carcharhiniformes Galeus melastomus and Scyliorhinus canicida and the Torpediniformes Torpedo matmorata were caught in all GSAs studied. On the continental shelf, the Rajidae family was the most abundant, being represented in primis by Raja clavaia and then by R. miraleius, R. polystigma and R. asterias. The slope was characterized by the prevalence of G. melastomus in all GSAs, followed by S. canictda, E. spinax and Squalus blainville. Areas under higher fishing pressure, such as the Adriatic Sea and the Spanish coast (with the exception of the Balearic Islands), show a low abundance of chondrichthyans, but other areas with a high level of fishing pressure, such as southwestern Sicily, show a high abundance, suggesting that other environmental drivers work together with fishing pressure to shape their distribution. Results of generalized additive models highlighted that depth is one of the most important environmental drivers influencing the distribution of both batoid and shark species, although temperature also showed a significant influence on their distribution. The approach explored in this work shows the possibility of producing maps modelling the distribution of demersal chondrichthyans in the Mediterranean that are useful for the management and conservation of these species at a regional scale. However, because of the vulnerability of these species to fishing exploitation, fishing pressure should be further incorporated in these models in addition to these environmental drivers.
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Fu, C., et al. "Making ecological indicators management ready: Assessing the specificity, sensitivity, and threshold response of ecological indicators." Ecological Indicators. 105 (2019): 16–28.
Résumé: Moving toward ecosystem-based fisheries management (EBFM) necessitates a suite of ecological indicators that are responsive to fishing pressure, capable of tracking changes in the state of marine ecosystems, and related to management objectives. In this study, we employed the gradient forest method to assess the performance of 14 key ecological indicators in terms of specificity, sensitivity and the detection of thresholds for EBFM across ten marine ecosystems using four modelling frameworks (Ecopath with Ecosim, OSMOSE, Atlantis, and a multi-species size-spectrum model). Across seven of the ten ecosystems, high specificity to fishing pressure was found for most of the 14 indicators. The indicators biomass to fisheries catch ratio (B/C), mean lifespan and trophic level of fish community were found to have wide utility for evaluating fishing impacts. The biomass indicators, which have been identified as Essential Ocean Variables by the Global Ocean Observing System (GOOS), had lower performance for evaluating fishing impacts, yet they were most sensitive to changes in primary productivity. The indicator B/C was most sensitive to low levels of fishing pressure with a generally consistent threshold response around 0.4*FMSY (fishing mortality rate at maximum sustainable yield) across nine of the ten ecosystems. Over 50% of the 14 indicators had threshold responses at, or below ∼0.6* FMSY for most ecosystems, indicating that these ecosystems would have already crossed a threshold for most indicators when fished at FMSY. This research provides useful insights on the performance of indicators, which contribute to facilitating the worldwide move toward EBFM.
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Gaboriau, T., et al. "Ecological constraints coupled with deep-time habitat dynamics predict the latitudinal diversity gradient in reef fishes." Proc. R. Soc. B-Biol. Sci.. 286.1911 (2019): 20191506.
Résumé: We develop a spatially explicit model of diversification based on palaeohabitat to explore the predictions of four major hypotheses potentially explaining the latitudinal diversity gradient (LDG), namely, the 'time-area', 'tropical niche conservatism', 'ecological limits' and 'evolutionary speed' livpotheses. We compare simulation outputs to observed diversity gradients in the global reef fish fauna. Our simulations show that these hypotheses are nonmutually exclusive and that their relative influence depends on the time scale considered. Simulations suggest that reef habitat dynamics produced the LDG during deep geological time, while ecological constraints shaped the modern LDG, with a strong influence of the reduction in the latitudinal extent of tropical reefs during the Neogene. Overall, this study illustrates how mechanistic models in ecology and evolution can provide a temporal and spatial understanding of the role of speciation, extinction and dispersal in generating biodiversity patterns.
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Garcon, V., et al. "Multidisciplinary Observing in the World Ocean's Oxygen Minimum Zone Regions: From Climate to Fish – The VOICE Initiative." Front. Mar. Sci.. 6 (2019): 722.
Résumé: Multidisciplinary ocean observing activities provide critical ocean information to satisfy ever-changing socioeconomic needs and require coordinated implementation. The upper oxycline (transition between high and low oxygen waters) is fundamentally important for the ecosystem structure and can be a useful proxy for multiple observing objectives connected to eastern boundary systems (EBSs) that neighbor oxygen minimum zones (OMZs). The variability of the oxycline and its impact on the ecosystem (VOICE) initiative demonstrates how societal benefits drive the need for integration and optimization of biological, biogeochemical, and physical components of regional ocean observing related to EBS. In liaison with the Global Ocean Oxygen Network, VOICE creates a roadmap toward observation-model syntheses for a comprehensive understanding of selected oxycline-dependent objectives. Local to global effects, such as habitat compression or deoxygenation trends, prompt for comprehensive observing of the oxycline on various space and time scales, and for an increased awareness of its impact on ecosystem services. Building on the Framework for Ocean Observing (FOO), we present a first readiness level assessment for ocean observing of the oxycline in EBS. This was to determine current ocean observing design and future needs in EBS regions (e.g., the California Current System, the Equatorial Eastern Pacific off Ecuador, the Peru-Chile Current system, the Northern Benguela off Namibia, etc.) building on the FOO strategy. We choose regional champions to assess the ocean observing design elements proposed in the FOO, namely, requirement processes, coordination of observational elements, and data management and information products and the related best practices. The readiness level for the FOO elements was derived for each EBS through a similar and very general ad hoc questionnaire. Despite some weaknesses in the questionnaire design and its completion, an assessment was achievable. We found that fisheries and ecosystem management are a societal requirement for all regions, but maturity levels of observational elements and data management and information products differ substantially. Identification of relevant stakeholders, developing strategies for readiness level improvements, and building and sustaining infrastructure capacity to implement these strategies are fundamental milestones for the VOICE initiative over the next 2-5 years and beyond.
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Gilman, E., et al. "Robbing Peter to pay Paul: replacing unintended cross-taxa conflicts with intentional tradeoffs by moving from piecemeal to integrated fisheries bycatch management." Rev Fish Biol Fisheries (2019).
Résumé: Bycatch in fisheries can have profound effects on the abundance of species with relatively low resilience to increased mortality, can alter the evolutionary characteristics and concomitant fitness of affected populations through heritable trait-based selective removals, and can alter ecosystem functions, structure and services through food web trophic links. We challenge current piecemeal bycatch management paradigms, which reduce the mortality of one taxon of conservation concern at the unintended expense of others. Bycatch mitigation measures may also reduce intraspecific genetic diversity. We drew examples of broadly prescribed ‘best practice’ methods to mitigate bycatch that result in unintended cross-taxa conflicts from pelagic longline, tuna purse seine, gillnet and trawl fisheries. We identified priority improvements in data quality and in understanding ecological effects of bycatch fishing mortality to support holistic ecological risk assessments of the effects of bycatch removals conducted through semi-quantitative and model-based approaches. A transition to integrated bycatch assessment and management that comprehensively consider biodiversity across its hierarchical manifestations is needed, where relative risks and conflicts from alternative bycatch management measures are evaluated and accounted for in fisheries decision-making processes. This would enable managers to select measures with intentional and acceptable tradeoffs to best meet objectives, when conflicts are unavoidable.
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Grüss, A., et al. "Building bridges between global information systems on marine organisms and ecosystem models." Ecological Modelling. 398 (2019): 1–19.
Résumé: To facilitate the wider implementation of ecosystem modeling platforms and, thereby, to help advance ecosystem-based fisheries management (EBFM) worldwide, tools delivering a large quantity of inputs to ecosystem models are needed. We developed a web application providing OSMOSE ecosystem models with values for trophic, growth and reproduction parameters derived from data from two global information systems (FishBase and SeaLifeBase). Our web application guides the user through simple queries to extract information from FishBase and SeaLifeBase data archives, and it delivers all the configuration files necessary for running an OSMOSE model. Here, we present our web application and demonstrate it for the West Florida Shelf ecosystem. Our software architecture can serve as a basis for designing other advanced web applications using FishBase and SeaLifeBase data in support of EBFM.
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Hidalgo, M., et al. "Size-dependent survival of European hake juveniles in the Mediterranean Sea." Sci. Mar.. 83 (2019): 207–221.
Résumé: Most studies on European hake focus on the recruitment process and nursery areas, whereas the information is comparatively limited on the ecology of the juvenile stage (ca. second year of life)-the one most exploited by the Mediterranean trawl fisheries. Using information of the MEDITS programme, we provide a spatial and temporal assessment of the influence of body size and growth on hake survival from recruits (age 0) to juveniles (age 1), along with the impact of surface temperature and chlorophyll variability. At a biogeographic scale, size-dependent survival is supported, with areas with higher mean length of recruits and juveniles yielding higher survival. A similar pattern was observed at interannual level in some western Mediterranean areas, also mediated by a density-dependent effect on growth. However, the most recurrent inter-annual pattern was a negative effect of size on survival, which could be attributed to potential ontogenetic changes in catchability and underrepresentation of intra-annual recruitment pulses that are seasonally inaccessible to the MEDITS survey. Results also evidence that survival in the Alboran and Adriatic seas is dependent on the primary production variability, and that Corsica and Sardinia could be potential feeding grounds receiving juveniles from neighbouring areas. The present study reveals the importance of size- and growth-dependent survival in the juvenile stage of European hake in the Mediterranean Sea.
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Juhel, J. - B., et al. "Isolation and no-entry marine reserves mitigate anthropogenic impacts on grey reef shark behavior." Sci Rep. 9 (2019): 2897.
Résumé: Reef sharks are vulnerable predators experiencing severe population declines mainly due to overexploitation. However, beyond direct exploitation, human activities can produce indirect or sublethal effects such as behavioral alterations. Such alterations are well known for terrestrial fauna but poorly documented for marine species. Using an extensive sampling of 367 stereo baited underwater videos systems, we show modifications in grey reef shark (Carcharhinus amblyrhynchos) occurrence and feeding behavior along a marked gradient of isolation from humans across the New Caledonian archipelago (South-Western Pacific). The probability of occurrence decreased by 68.9% between wilderness areas (more than 25 hours travel time from the capital city) and impacted areas while the few individuals occurring in impacted areas exhibited cautious behavior. We also show that only large no-entry reserves (above 150 km(2)) can protect the behavior of grey reef sharks found in the wilderness. Influencing the fitness, human linked behavioral alterations should be taken into account for management strategies to ensure the persistence of populations.
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L'Honore, T., et al. "Are European sea bass as euryhaline as expected? Intraspecific variation in freshwater tolerance." Mar. Biol.. 166.8 (2019): 102.
Résumé: In teleosts, the regulation of hydromineral balance has a direct impact on several physiological functions, biochemical processes, and can influence behaviour, distribution and survival. As European sea bass Dicentrarchus labrax undertake seasonal migrations from seawater (SW) to brackish, estuarine and fresh water (FW) in their habitat, this study investigates their capacity to tolerate fresh water and explores intraspecific variations in physiological responses. Juvenile D. labrax were transferred from SW to FW at various ages. Freshwater-tolerant and non-tolerant phenotypes were discriminated according to behavioural and morphological characteristics. About 30% of the fish exposed to FW were identified as freshwater intolerant following FW challenges performed at different ages. Interestingly, intolerant fish exhibited the same phenotypic traits: erratic swimming, lower speed, isolation from the shoal and darker colour. Freshwater-intolerant fish were also characterised by a significant lower blood osmolality compared to tolerant fish, and significantly lower Na+/K+-ATPase alpha 1a expression in the posterior kidney. An imbalance in ion regulatory mechanisms was further confirmed by a blood Na+/Cl- ratio imbalance observed in some freshwater-intolerant fish. The analysis of glucocorticoid and mineralocorticoid receptor expression levels in gills and kidney revealed significant differences between freshwater-intolerant and -tolerant fish in both organs, suggesting differential stress-related responses. This study clearly shows an intraspecific difference in the responses following FW transfer with a decreased renal ion uptake capacity as a major cause for freshwater intolerance.
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Leroy, B., et al. "Global biogeographical regions of freshwater fish species." J. Biogeogr. (2019).
Résumé: Aim To define the major biogeographical regions and transition zones for freshwater fish species. Taxon Strictly freshwater species of actinopterygian fish (i.e. excluding marine and amphidromous fish families). Methods We based our bioregionalization on a global database of freshwater fish species occurrences in drainage basins, which, after filtering, includes 11,295 species in 2,581 basins. On the basis of this dataset, we generated a bipartite (basin-species) network upon which we applied a hierarchical clustering algorithm (the Map Equation) to detect regions. We tested the robustness of regions with a sensitivity analysis. We identified transition zones between major regions with the participation coefficient, indicating the degree to which a basin has species from multiple regions. Results Our bioregionalization scheme showed two major supercontinental regions (Old World and New World, 50% species of the world and 99.96% endemics each). Nested within these two supercontinental regions lie six major regions (Nearctic, Neotropical, Palearctic, Ethiopian, Sino-Oriental and Australian) with extremely high degrees of endemism (above 96% except for the Palearctic). Transition zones between regions were of limited extent compared to other groups of organisms. We identified numerous subregions with high diversity and endemism in tropical areas (e.g. Neotropical), and a few large subregions with low diversity and endemism at high latitudes (e.g. Palearctic). Main conclusions Our results suggest that regions of freshwater fish species were shaped by events of vicariance and geodispersal which were similar to other groups, but with freshwater-specific processes of isolation that led to extremely high degrees of endemism (far exceeding endemism rates of other continental vertebrates), specific boundary locations and limited extents of transition zones. The identified bioregions and transition zones of freshwater fish species reflect the strong isolation of freshwater fish faunas for the past 10-20 million years. The extremely high endemism and diversity of freshwater fish fauna raises many questions about the biogeographical consequences of current introductions and extinctions.
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Lett, C., et al. "Modeling larval dispersal for the gilthead seabream in the northwestern Mediterranean Sea." Marine Environmental Research (2019): 104781.
Résumé: To investigate dispersal and connectivity between spawning and lagoon nursery habitats of the gilthead seabream, Sparus aurata, in the Gulf of Lions (northwestern Mediterranean Sea), we modeled the potential transport of the species’ larvae between its supposed main spawning site in the region (the Planier Island) and two of its main local nursery areas (the coastal lagoons of Thau and Salses-Leucate). Passive larval drift simulations using a dispersal biophysical model showed a large variability in the possible trajectories from spawning to nursery areas and in the predicted ages for larvae arrival on the two nursery sites. The most common ages at arrival obtained in the simulations (20–60 days) are broadly consistent with previous modeling studies but contrast with the actual ages of the S. aurata post-larvae collected in 2016 and 2017 at time of the lagoon entrances (60–90 days, from otolith readings). The period between 25 and 70 days being critical for gilthead seabream larvae to acquire sufficient swimming, osmoregulatory, and olfactory abilities to enter coastal lagoons, we argue that ontogenic development plays a crucial role in the transport and local retention of S. aurata larvae in the studied region, explaining the discrepancy between simulation results and observed data.
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Loiseau, N., et al. "Functional convergence in macroalgal assemblages of isolated coral reefs in the Mozambique Channel." Mar. Biol.. 166.3 (2019): 27.
Résumé: The understanding of macroalgae functions and processes requires a good understanding of the spatial distribution of the functional diversity of macroalgae. In coral reef environments, this information remains fragmentary. Here, based on 314 species sorted according to a set of 10 functional traits, the functional niches of macroalgae at three remote coral reefs of the iles Eparses in the Indian Ocean (Europa, Glorioso, and Juan de Nova) are described. For the comparison of intra- and inter-reef functional structures, we characterized both taxonomic and functional beta diversities, and their turnover and nestedness-resultant components. Within the three reefs, we observed strong taxonomic and functional dissimilarities across sampling sites, mainly determined by turnover. Null models highlighted several processes, which structured macroalgal assemblages across sites: a combined effect of environmental variables (geomorphology and wave exposure), limiting similarity and stochastic effects. At the inter-reef scale, the three reefs only shared a small number of species, but the functional beta diversity between Glorioso and Juan de Nova was weak. This suggested that although assemblages were different, fairly similar environmental conditions may have homogenized macroalgae functions through both ecological and evolutionary scale processes. Our results support the idea that macroalgal assemblages can provide similar functional trait portfolios, despite distinct species composition. We stress the need to focus on macroalgae life-history traits for a better understanding of the processes structuring their communities.
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