2019

Bernard, C., et al. "Very Low Phytoplankton Diversity in a Tropical Saline-Alkaline Lake, with Co-dominance of Arthrospira fusiformis (Cyanobacteria) and Picocystis salinarum (Chlorophyta)." Microb Ecol (2019).
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Galès, A., et al. "Importance of ecological interactions during wastewater treatment using High Rate Algal Ponds under different temperate climates." Algal Research. 40 (2019): 101508.
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2018

Bettarel, Y., et al. "Hordes of Phages in the Gut of the Tilapia Sarotherodon melanotheron." Sci Rep. 8 (2018): 11311.
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Bettarel, Y., et al. "Corallivory and the microbial debacle in two branching scleractinians." Isme J.. 12.4 (2018): 1109–1126.
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Chiarello, M., et al. "Skin microbiome of coral reef fish is highly variable and driven by host phylogeny and diet." Microbiome. 6 (2018): 147.
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de Lorgeril, J., et al. "Inefficient immune response is associated with microbial permissiveness in juvenile oysters affected by mass mortalities on field." Fish & Shellfish Immunology. 77 (2018): 156–163.
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Duval, C., et al. "Phylogeny and salt-tolerance of freshwater Nostocales strains: Contribution to their systematics and evolution." Harmful Algae. 73 (2018): 58–71.
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Gérard, E., et al. "Key Role of Alphaproteobacteria and Cyanobacteria in the Formation of Stromatolites of Lake Dziani Dzaha (Mayotte, Western Indian Ocean)." Front. Microbiol.. 9 (2018).
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Goni-Urriza, M., et al. "Consequences of contamination on the interactions between phytoplankton and bacterioplankton." Chemosphere. 195 (2018): 212–222.
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Hugoni, M., et al. "Spatiotemporal variations in microbial diversity across the three domains of life in a tropical thalassohaline lake (Dziani Dzaha, Mayotte Island)." Molecular Ecology. 27.23 (2018): 4775–4786.
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Jacquemot, L., et al. "Therapeutic potential of a new jumbo phage that infects Vibrio coralliilyticus, a widespread coral pathogen." Front. Microbiol.. 9 (2018): 2501.
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Ram, P. A. S., et al. "Bacterial-viral interactions in the sea surface microlayer of a black carbon-dominated tropical coastal ecosystem (Halong Bay, Vietnam)." Elementa-Sci. Anthrop.. 6 (2018): 13.
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Restrepo-Ortiz, C. X., et al. "Development of a 16S rRNA-targeted fluorescence in situ hybridization probe for quantification of the ammonia-oxidizer Nitrosotalea devanaterra and its relatives." Syst. Appl. Microbiol.. 41.4 (2018): 408–413.
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Zubia, M., et al. "Diversity and assemblage structure of tropical marine flora on lava flows of different ages." Aquat. Bot.. 144 (2018): 20–30.
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Zubia, M., et al. "Macroalgae as a tool for assessing the ecological status of coral reefs under the Water Framework Directive: A case study on the reef flats of La Reunion (Indian Ocean)." Mar. Pollut. Bull.. 137 (2018): 339–351.
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2017

Blanchet, M., et al. "When riverine dissolved organic matter (DOM) meets labile DOM in coastal waters: changes in bacterial community activity and composition." Aquat. Sci.. 79.1 (2017): 27–43.
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Leboulanger, C., et al. "Microbial Diversity and Cyanobacterial Production in Dziani Dzaha Crater Lake, a Unique Tropical Thalassohaline Environment." Plos One. 12.1 (2017): e0168879.
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2016

Aubé, J., et al. "The impact of long-term hydrocarbon exposure on the structure, activity, and biogeochemical functioning of microbial mats." Marine Pollution Bulletin. 111.1 (2016): 115–125.
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Bettarel, Yvan, et al. "Flow cytometric enumeration of bacterial in the coral surface mucus layer." Journal of Microbiological Methods. 128 (2016): 16–19.
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Brouwer, G. M., et al. "Diet shifts and population dynamics of estuarine foraminifera during ecosystem recovery after experimentally induced hypoxia crises." Estuar. Coast. Shelf Sci.. 170 (2016): 20–33.
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Gounand, I., et al. "Size evolution in microorganisms masks trade-offs predicted by the growth rate hypothesis." Proc. R. Soc. B-Biol. Sci.. 283.1845 (2016): 20162272.
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Jeanbille, M., et al. "Chronic Polyaromatic Hydrocarbon (PAH) Contamination Is a Marginal Driver for Community Diversity and Prokaryotic Predicted Functioning in Coastal Sediments." Front. Microbiol.. 7 (2016): Unsp-1303.
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Kadowaki, K., et al. "Predicting biotic interactions and their variability in a changing environment." Biol. Lett.. 12.5 (2016): 20151073.
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Meistertzheim, A. - L., et al. "Patterns of bacteria-host associations suggest different ecological strategies between two reef building cold-water coral species." Deep Sea Research Part I: Oceanographic Research Papers. 114 (2016): 12–22.
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Pringault, O., et al. "Consequences of contaminant mixture on the dynamics and functional diversity of bacterioplankton in a southwestern Mediterranean coastal ecosystem." Chemosphere. 144 (2016): 1060–1073.
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Trottet, A., et al. "Heterotrophic Bacteria Show Weak Competition for Nitrogen in Mediterranean Coastal Waters (Thau Lagoon) in Autumn." Microb Ecol. 71.2 (2016): 304–314.
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Zilius, M., R. de Wit, and M. Bartoli. "Response of sedimentary processes to cyanobacteria loading." Journal of Limnology. 75.2 (2016): 236–247.
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2015

Blanchet, M., et al. "Changes in bacterial community metabolism and composition during the degradation of dissolved organic matter from the jellyfish Aurelia aurita in a Mediterranean coastal lagoon." Environ Sci Pollut Res. 22.18 (2015): 13638–13653.
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Brauer, V. S., et al. "Competition and facilitation between the marine nitrogen-fixing cyanobacteriunn Cyanothece and its associated bacterial community." Frontiers in Microbiology. 5 (2015).
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Joux, F., et al. "Methods for Studying Microorganisms in the Environment." Eds. J. - C. Bertrand, et al. Environmental Microbiology: Fundamentals and Applications. Springer Netherlands, 2015. 757–829.
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Liess, A., et al. "Terrestrial runoff may reduce microbenthic net community productivity by increasing turbidity: a Mediterranean coastal lagoon mesocosm experiment." Hydrobiologia. 753.1 (2015): 205–218.
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Nguyen-Kim, H., et al. "Viral and Bacterial Epibionts in Thermally-Stressed Corals." Journal of Marine Science and Engineering. 3.4 (2015): 1272–1286.
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Said, O. B., et al. "Changes of benthic bacteria and meiofauna assemblages during bio-treatments of anthracene-contaminated sediments from Bizerta lagoon (Tunisia)." Environ Sci Pollut Res. 22.20 (2015): 15319–15331.
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Turon, V., et al. "Raw dark fermentation effluent to support heterotrophic microalgae growth: microalgae successfully outcompete bacteria for acetate." Algal Research. 12 (2015): 119–125.
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2014

Doan, T. T., et al. "Influence of buffalo manure, compost, vermicompost and biochar amendments on bacterial and viral communities in soil and adjacent aquatic systems." Applied Soil Ecology. 73 (2014): 78–86.
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Fouilland, E., et al. "Bacterial carbon dependence on freshly produced phytoplankton exudates under different nutrient availability and grazing pressure conditions in coastal marine waters." FEMS microbiology ecology. 87.3 (2014): 757–769.
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Fouilland, E., et al. "Coupling algal biomass production and anaerobic digestion: Production assessment of some native temperate and tropical microalgae." Biomass & Bioenergy (2014).
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Louati, H., et al. "Impacts of bioremediation schemes for the mitigation of a low-dose anthracene contamination on free-living marine benthic nematodes." Ecotoxicology. 23.2 (2014): 201–212.
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Nguyen-Kim, H., et al. "High occurrence of viruses in the mucus layer of scleractinian corals." Environmental Microbiology Reports. 6.6 (2014): 675–682.
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Zilius, M., et al. "Feedback Mechanisms Between Cyanobacterial Blooms, Transient Hypoxia, and Benthic Phosphorus Regeneration in Shallow Coastal Environments." Estuaries and Coasts. 37.3 (2014): 680–694.
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2013

Amossé, J., et al. "The flows of nitrogen, bacteria and viruses from the soil to water compartments are influenced by earthworm activity and organic fertilization (compost vs. vermicompost)." Soil Biology & Biochemistry. 66 (2013): 197–203.
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BLANCHETON, J. - P., et al. "Insight into bacterial population in aquaculture systems and its implication." Aquacultural Engineering. 53 (2013): 30–39.
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Brauer, V. S., et al. "Low temperature delays timing and enhances the cost of nitrogen fixation in the unicellular cyanobacterium Cyanothece." The ISME journal. 7.11 (2013): 2105–2115.
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Le Chevanton, M., et al. "Screening and selection of growth-promoting bacteria for Dunaliella cultures." Algal Research. 2 (2013): 212–222.
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Louati, H., et al. "The roles of biological interactions and pollutant contamination in shaping microbial benthic community structure." Chemosphere. 93.10 (2013): 2535–2546.
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Louati, H., et al. "Biostimulation as an attractive technique to reduce phenanthrene toxicity for meiofauna and bacteria in lagoon sediment." Environ Sci Pollut Res (2013): 1–10.
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Rossi, F., et al. "Spatial distribution and nutritional requirements of the endosymbiont-bearing bivalve Loripes lacteus (sensu Poli, 1791) in a Mediterranean Nanozostera noltii (Hornemann) meadow." Journal of Experimental Marine Biology and Ecology. 440 (2013): 108–115.
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2012

Boukef, I., et al. "Spatial distribution and decay rates of coliforms in the sediments and water column of the bizerte lagoon." Vie Milieu. 62.1 (2012): 29–36.
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Bouvier, T., et al. "Contrasted Effects of Diversity and Immigration on Ecological Insurance in Marine Bacterioplankton Communities." PLoS One. 7.6 (2012).
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Bouvy, M., et al. "Uncoupled viral and bacterial distributions in coral reef waters of Tuamotu Archipelago (French Polynesia)." Marine Pollution Bulletin. 65.10–12 (2012): 506–515.
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Caro, A., et al. "Epibiotic bacterial community of Sphaeroma serratum (Crustacea, Isopoda): relationship with molt status." Mar. Ecol.-Prog. Ser.. 457 (2012): 11–27.
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Fouilland, E. "Biodiversity as a tool for waste phycoremediation and biomass production." Rev. Environ. Sci. Bio-Technol.. 11.1 (2012): 1–4.
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Gros, O., et al. "Plasticity of symbiont acquisition throughout the life cycle of the shallow-water tropical lucinid Codakia orbiculata (Mollusca: Bivalvia)." Environ. Microbiol.. 14.6 (2012): 1584–1595.
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Pringault, O., H. Viret, and R. Duran. "Interactions between Zn and bacteria in marine tropical coastal sediments." Environ. Sci. Pollut. Res.. 19.3 (2012): 879–892.
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van der Heide, T., et al. "A three-stage symbiosis forms the foundation of seagrass ecosystems." Science. 336 (2012): 1432–1434.
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2010

Boukef, I., et al. "Survival of Escherichia coli Strains in Mediterranean Brackish Water in the Bizerte Lagoon in Northern Tunisia." Water Environ Res. 82.11 (2010): 2249–2257.
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Denis, M., et al. "Ultraphytoplankton basin-scale distribution in the eastern Mediterranean Sea in winter: link to hydrodynamism and nutrients." Biogeosciences. 7.7 (2010): 2227–2244.
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2009

Auguet, J. C., et al. "Potential effect of freshwater virus on the structure and activity of bacterial communities in the Marennes-Oleron Bay (France)." Microb Ecol. 57.2 (2009): 295–306.
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Bonilla-Findji, O., et al. "Effect of seawater-freshwater cross-transplantations on viral dynamics and bacterial diversity and production." Aquat. Microb. Ecol.. 54.1 (2009): 1–11.
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Pringault, O., S. Tesson, and E. Rochelle-Newall. "Respiration in the Light and Bacterio-Phytoplankton Coupling in a Coastal Environment." Microb. Ecol.. 57.2 (2009): 321–334.
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2008

Auguet, J. C., et al. "Fingerprinting the genetic diversity of the biotin carboxylase gene (accC) in aquatic ecosystems as a potential marker for studies of carbon dioxide assimilation in the dark." Environ Microbiol. 10.10 (2008): 2527–2536.
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2005

Auguet, J. C., et al. "Dynamic of virioplankton abundance and its environmental control in the Charente estuary (France)." Microb Ecol. 50.3 (2005): 337–349.
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