2019 |
Boavida, J., et al. "Out of the Mediterranean? Post-glacial colonization pathways varied among cold-water coral species." J. Biogeogr.. 46.5 (2019): 915–931.
Résumé: Aim: To infer cold-water corals' (CWC) post-glacial phylogeography and assess the role of Mediterranean Sea glacial refugia as origins for the recolonization of the northeastern Atlantic Ocean. Location: Northeastern Atlantic Ocean and Mediterranean Sea. Taxon: Lophelia pertusa, Madrepora oculata. Methods: We sampled CWC using remotely operated vehicles and one sediment core for coral and sediment dating. We characterized spatial genetic patterns (microsatellites and a nuclear gene fragment) using networks, clustering and measures of genetic differentiation. Results: Inferences from microsatellite and sequence data were congruent, and showed a contrast between the two CWC species. Populations of L. pertusa present a dominant pioneer haplotype, local haplotype radiations and a majority of endemic variation in lower latitudes. Madrepora oculata populations are differentiated across the northeastern Atlantic and genetic lineages are poorly admixed even among neighbouring sites. Conclusions: Our study shows contrasting post-glacial colonization pathways for two key habitat-forming species in the deep sea. The CWC L. pertusa has likely undertaken a long-range (post-glacial) recolonization of the northeastern Atlantic directly from refugia located along southern Europe (Mediterranean Sea or Gulf of Cadiz). In contrast, the stronger genetic differentiation of M. oculata populations mirrors the effects of long-term isolation in multiple refugia. We suggest that the distinct and genetically divergent, refugial populations initiated the post-glacial recolonization of the northeastern Atlantic margins, leading to a secondary contact in the northern range and reaching higher latitudes much later, in the late Holocene. This study highlights the need to disentangle the influences of present-day dispersal and evolutionary processes on the distribution of genetic polymorphisms, to unravel the influence of past and future environmental changes on the connectivity of cosmopolitan deep-sea ecosystems associated with CWC.
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2018 |
Annasawmy, P., et al. "Micronekton diel migration, community composition and trophic position within two biogeochemical provinces of the South West Indian Ocean: Insight from acoustics and stable isotopes." Deep-Sea Res. Part I-Oceanogr. Res. Pap.. 138 (2018): 85–97.
Résumé: Spatial distribution, community composition and trophic roles of micronekton (crustaceans, fishes and squids) were investigated in the Indian South Subtropical Gyre (ISSG) province and the East African Coastal province (EAFR), by combining acoustic surveys, mid-water trawls and stable isotope analyses from scientific cruises conducted in 2009 and 2010. Mesopelagic micronekton performed diel vertical migrations in both provinces, from deep (400-740 m) to surface (0-200 m) layers at dusk and in the opposite direction at dawn, with some species migrating below 740 m. The EAFR province was more dynamic than the oligotrophic ISSG province, with enhanced eddy activity and enhanced yearly productivity. The active enrichment mechanisms in the EAFR, in terms of available primary production, led to high micronekton acoustic density (as a proxy of micronekton abundance) and large micronekton weight and abundance estimates from trawl data. Particulate organic matter in the EAFR exhibited greater enrichment in C-13 and N-15 compared to the ISSG and, consequently, tissues of selected micronekton organisms in the EAFR were more enriched in N-15 (higher delta N-15 values). In both provinces, micronekton encompassed a wide range of isotopic niches, with large overlaps between species. Micronekton and swordfish in the EAFR had an overlapping range of delta N-15 values, contrasting with the ISSG province where swordfish were two trophic levels higher than the sampled micronekton. Our results provide some evidence that the combined action of riverine input and the dynamics of eddies might influence productivity in the EAFR, and hence the abundance of micronekton and the enrichment of tissues in N-15, compared to the oligotrophic ISSG province.
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Coelho, R., et al. "Distribution patterns and population structure of the blue shark (Prionace glauca) in the Atlantic and Indian Oceans." Fish. Fish.. 19.1 (2018): 90–106.
Résumé: The blue shark (Prionace glauca) is the most frequently captured shark in pelagic oceanic fisheries, especially pelagic longlines targeting swordfish and/or tunas. As part of cooperative scientific efforts for fisheries and biological data collection, information from fishery observers, scientific projects and surveys, and from recreational fisheries from several nations in the Atlantic and Indian Oceans was compiled. Data sets included information on location, size and sex, in a total of 478,220 blue shark records collected between 1966 and 2014. Sizes ranged from 36 to 394cm fork length. Considerable variability was observed in the size distribution by region and season in both oceans. Larger blue sharks tend to occur in equatorial and tropical regions, and smaller specimens in higher latitudes in temperate waters. Differences in sex ratios were also detected spatially and seasonally. Nursery areas in the Atlantic seem to occur in the temperate south-east off South Africa and Namibia, in the south-west off southern Brazil and Uruguay, and in the north-east off the Iberian Peninsula and the Azores. Parturition may occur in the tropical north-east off West Africa. In the Indian Ocean, nursery areas also seem to occur in temperate waters, especially in the south-west Indian Ocean off South Africa, and in the south-east off south-western Australia. The distributional patterns presented in this study provide a better understanding of how blue sharks segregate by size and sex, spatially and temporally, and improve the scientific advice to help adopt more informed and efficient management and conservation measures for this cosmopolitan species.
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2016 |
Escalle, L., et al. "Environmental factors and megafauna spatio-temporal co-occurrence with purse-seine fisheries." Fish. Oceanogr.. 25.4 (2016): 433–447.
Résumé: Tropical tuna purse-seine fisheries spatially co-occur with various megafauna species, such as whale sharks, dolphins and baleen whales in all oceans of the world. Here, we analyzed a 10-year (2002–2011) dataset from logbooks of European tropical tuna purse-seine vessels operating in the tropical Eastern Atlantic and Western Indian Oceans, with the aim of identifying the principle environmental variables under which such co-occurrence appear. We applied a Delta-model approach using Generalized Additive Models (GAM) and Boosted Regression Trees (BRT) models, accounting for spatial autocorrelation using a contiguity matrix based on a residuals autocovariate (RAC) approach. The variables that contributed most in the models were chlorophyll-a concentration in the Atlantic Ocean, as well as depth and monsoon in the Indian Ocean. High co-occurrence between whale sharks, baleen whales and tuna purse-seine fisheries were mostly observed in productive areas during particular seasons. In light of the lack of a full coverage scientific observer on board program, the large, long-term dataset obtained from logbooks of tuna purse-seine vessels is highly important for identifying seasonal and spatial co-occurrence between the distribution of fisheries and megafauna, and the underlying environmental variables. This study can help to design conservation management measures for megafauna species within the framework of spatial fishery management strategies.
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Sebastian, M., et al. "Lipid remodelling is a widespread strategy in marine heterotrophic bacteria upon phosphorus deficiency." Isme J.. 10.4 (2016): 968–978.
Résumé: Upon phosphorus (P) deficiency, marine phytoplankton reduce their requirements for P by replacing membrane phospholipids with alternative non-phosphorus lipids. It was very recently demonstrated that a SAR11 isolate also shares this capability when phosphate starved in culture. Yet, the extent to which this process occurs in other marine heterotrophic bacteria and in the natural environment is unknown. Here, we demonstrate that the substitution of membrane phospholipids for a variety of non-phosphorus lipids is a conserved response to P deficiency among phylogenetically diverse marine heterotrophic bacteria, including members of the Alphaproteobacteria and Flavobacteria. By deletion mutagenesis and complementation in the model marine bacterium Phaeobacter sp. MED193 and heterologous expression in recombinant Escherichia coli, we confirm the roles of a phospholipase C (PlcP) and a glycosyltransferase in lipid remodelling. Analyses of the Global Ocean Sampling and Tara Oceans metagenome data sets demonstrate that PlcP is particularly abundant in areas characterized by low phosphate concentrations. Furthermore, we show that lipid remodelling occurs seasonally and responds to changing nutrient conditions in natural microbial communities from the Mediterranean Sea. Together, our results point to the key role of lipid substitution as an adaptive strategy enabling heterotrophic bacteria to thrive in the vast P-depleted areas of the ocean.
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2014 |
Bourjea, J., et al. "Marine turtle interaction with purse-seine fishery in the Atlantic and Indian oceans: Lessons for management." Biological Conservation. 178 (2014): 74–87.
Résumé: Bycatch of endangered marine turtles is a growing issue for the management of all fisheries, including the oceanic purse-seine fishery. The aim of this study was to assess the spatial and temporal variation in bycatch rates of these species in the entire European purse-seine fishery operating in the Atlantic and Indian oceans. The study was based on data collected through observer programs from 1995 to 2011. During that period, a total of 15 913 fishing sets were observed, including 6 515 on Drifting Fish Aggregating Devices (DFADs) and 9 398 on free swimming schools, representing a global coverage of 10.3% and 5.1% of the total fishing activity in the Atlantic and Indian Ocean, respectively. Moreover, from 2003 to 2011, 14 124 specific observations were carried out on DFADs to check turtle entanglement in the net covering DFADs. We found that the purse-seine fishery has a very low impact on marine turtles. We estimated that the annual number of individuals incidentally captured was 218 (SD = 150) and 250 (SD = 157) in the Atlantic and Indian Ocean, respectively, with more than 75% being released alive. The present study also investigated the impact of DFADs; which is considered a key conservation issue for this fishery. Drifting objects may play a key role in aggregating juveniles of marine turtles, implying the need for improving their construction to avoid entanglement (e.g. avoiding nets in the structure); however, based on our study it is not the main source of incidental captures of marine turtles in this fishery.
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Dueri, S., L. Bopp, and O. Maury. "Projecting the impacts of climate change on skipjack tuna abundance and spatial distribution." Global Change Biology. 20.3 (2014): 742–753.
Résumé: Climate-induced changes in the physical, chemical, and biological environment are expected to increasingly stress marine ecosystems, with important consequences for fisheries exploitation. Here, we use the APECOSM-E numerical model (Apex Predator ECOSystem Model – Estimation) to evaluate the future impacts of climate change on the physiology, spatial distribution, and abundance of skipjack tuna, the worldwide most fished species of tropical tuna. The main novelties of our approach lie in the mechanistic link between environmental factors, metabolic rates, and behavioral responses and in the fully three dimensional representation of habitat and population abundance. Physical and biogeochemical fields used to force the model are provided by the last generation of the IPSL-CM5 Earth System Model run from 1990 to 2100 under a &8216;business-as-usual&8217; scenario (RCP8.5). Our simulations show significant changes in the spatial distribution of skipjack tuna suitable habitat, as well as in their population abundance. The model projects deterioration of skipjack habitat in most tropical waters and an improvement of habitat at higher latitudes. The primary driver of habitat changes is ocean warming, followed by food density changes. Our projections show an increase of global skipjack biomass between 2010 and 2050 followed by a marked decrease between 2050 and 2095. Spawning rates are consistent with population trends, showing that spawning depends primarily on the adult biomass. On the other hand, growth rates display very smooth temporal changes, suggesting that the ability of skipjack to keep high metabolic rates in the changing environment is generally effective. Uncertainties related to our model spatial resolution, to the lack or simplification of key processes and to the climate forcings are discussed.
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2013 |
Bender, M. G., et al. "Biogeographic, historical and environmental influences on the taxonomic and functional structure of Atlantic reef fish assemblages." Global Ecology and Biogeography. 22.11 (2013): 1173–1182.
Résumé: Aim To disentangle how historic, biogeographic and environmental factors have shaped the composition of different reef fish assemblages, we analysed assemblage structure from a taxonomic (proportions of species from different families) and functional perspective (diet and body size). Location Atlantic Ocean. Methods The distributions of 1629 fish species were compiled for 31 locations across the Atlantic Ocean (39°66′ N, 27°50′ S). These locations provide a richness gradient ranging from 54 species in St Paul's Rocks to 474 in Cuba. We used cluster analyses to assess how historical and biogeographic factors have shaped the taxonomic and functional structure (i.e. the distribution of species within families, diet and body size groups) of assemblages. We then employed a constrained analysis of principal coordinates (CAP) to test the relative influence of the distance from the biodiversity centre in the Atlantic, sea surface temperature, isolation, coral species richness and area, and coastal length on the observed patterns of assemblage structure. Results The taxonomic and functional structure of reef fish assemblages across the Atlantic exhibits a biogeographic fingerprint, with a marked discrimination between species-rich biogenic reefs (concentrated primarily in the Caribbean and composed of small species feeding on invertebrates) and poorer peripheral regions dominated by larger species with more diverse diets. The first CAP axis explains 87% of body size distribution in assemblages, showing that the effects of sea surface temperature and coral richness and those of isolation are antagonistic and can be embedded into a single dimension. Environmental factors, such as temperature and habitat complexity, explain the disproportionate number of small species in the Caribbean, whereas in the remaining regions the predominance of large-bodied fish increases with isolation due to high dispersal ability. Main conclusions We found that historical events, which have shaped the biogeography of reef fishes, and environmental characteristics (coral reefs versus periphery) have both played a role in structuring the taxonomic and functional components of Atlantic fish assemblages.
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2010 |
Amandé, M., et al. "Bycatch of the European purse seine tuna fishery in the Atlantic Ocean for the 2003-2007 period." Aquatic Living Resources. 23.4 (2010): 353–362.
Résumé: Bycatch of several groups of species and their characteristics are presented for the period 2003 to 2007 for the European purse seine tuna fishery operating in the Atlantic Ocean. Data were collected through French and Spanish observer programmes and represented a total of 27 trips corresponding to 2.9% coverage. Bycatch is defined as non-targeted species and small or damaged target species. Bycatch species composition, main species length, sex ratio and the fate of the most common species are presented first. Stratified ratios relative to landings of major commercial tunas were then used to estimate the total bycatch; these ratios were considered the most appropriate variable for extrapolation. Stratification was based on the fishing mode (free school vs. floating object), season (quarters) and spatial areas. The annual average bycatch was estimated at about 6400 t, corresponding to a mean annual value of 80.8 t per 1000 t of tuna landed or 7.5% of the total catch. Tunas represent 83% (67.2 t/1000 t) of the total bycatch, followed by other bony fishes (10%, 7.8 t/1000 t), billfishes (5%, 4.0 t/1000 t), sharks (1%, 0.9 t/1000 t) and rays (1%, 0.9 t/1000 t). Based on estimates of the annual bycatch, 16% was kept on board and sold in local markets.
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