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Auteur Sebastian, M.; Smith, A.F.; Gonzalez, J.M.; Fredricks, H.F.; Van Mooy, B.; Koblizek, M.; Brandsma, J.; Koster, G.; Mestre, M.; Mostajir, B.; Pitta, P.; Postle, A.D.; Sanchez, P.; Gasol, J.M.; Scanlan, D.J.; Chen, Y. doi  openurl
  Titre Lipid remodelling is a widespread strategy in marine heterotrophic bacteria upon phosphorus deficiency Type Article scientifique
  Année 2016 Publication (up) Revue Abrégée Isme J.  
  Volume 10 Numéro 4 Pages 968-978  
  Mots-Clés 2 enzymes; agrobacterium-tumefaciens; bacterioplankton groups; Ecology; Mediterranean Sea; mesocosm experiment; microbial food-web; north-atlantic ocean; nutrient limitation; phosphate starvation  
  Résumé Upon phosphorus (P) deficiency, marine phytoplankton reduce their requirements for P by replacing membrane phospholipids with alternative non-phosphorus lipids. It was very recently demonstrated that a SAR11 isolate also shares this capability when phosphate starved in culture. Yet, the extent to which this process occurs in other marine heterotrophic bacteria and in the natural environment is unknown. Here, we demonstrate that the substitution of membrane phospholipids for a variety of non-phosphorus lipids is a conserved response to P deficiency among phylogenetically diverse marine heterotrophic bacteria, including members of the Alphaproteobacteria and Flavobacteria. By deletion mutagenesis and complementation in the model marine bacterium Phaeobacter sp. MED193 and heterologous expression in recombinant Escherichia coli, we confirm the roles of a phospholipase C (PlcP) and a glycosyltransferase in lipid remodelling. Analyses of the Global Ocean Sampling and Tara Oceans metagenome data sets demonstrate that PlcP is particularly abundant in areas characterized by low phosphate concentrations. Furthermore, we show that lipid remodelling occurs seasonally and responds to changing nutrient conditions in natural microbial communities from the Mediterranean Sea. Together, our results point to the key role of lipid substitution as an adaptive strategy enabling heterotrophic bacteria to thrive in the vast P-depleted areas of the ocean.  
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  Auteur institutionnel Thèse  
  Editeur Lieu de Publication Éditeur  
  Langue English Langue du Résumé Titre Original  
  Éditeur de collection Titre de collection Titre de collection Abrégé  
  Volume de collection Numéro de collection Edition  
  ISSN 1751-7362 ISBN Médium  
  Région Expédition Conférence  
  Notes Approuvé pas de  
  Numéro d'Appel MARBEC @ alain.herve @ collection 1624  
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Auteur Collet, A.; Durand, J.-D.; Desmarais, E.; Cerqueira, F.; Cantinelli, T.; Valade, P.; Ponton, D. doi  openurl
  Titre DNA barcoding post-larvae can improve the knowledge about fish biodiversity: an example from La Reunion, SW Indian Ocean Type Article scientifique
  Année 2018 Publication (up) Revue Abrégée Mitochondrial DNA Part A  
  Volume 29 Numéro 6 Pages 905-918  
  Mots-Clés DNA barcoding; estimating diversity; fauna; fish larvae; ichthyoplankton; island; Mascarene Archipelago; reef; species richness  
  Résumé The aim of this study was to demonstrate that fish larvae identified using their COI sequences offer a unique opportunity for improving the knowledge of local fish richness. Fish larvae were sampled at the end of their pelagic phase using light-traps set off the West Coast of La Reunion Island, southwestern Indian Ocean, once per month from October 2014 to March 2015. Among the 5174 larvae caught, 214 morphologically different specimens were selected, 196 successfully barcoded, giving a total of 101 different Barcode Index Numbers (BINs). Among these BINs, 55 had never been recorded in La Reunion exclusive economic zone (EEZ), and 13 were new for the BOLD database. Even if the sampling effort for collecting fish post-larvae during this study was relatively low, it allowed adding at least nine new species to an updated checklist of fishes of La Reunion EEZ.  
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  Auteur institutionnel Thèse  
  Editeur Lieu de Publication Éditeur  
  Langue English Langue du Résumé Titre Original  
  Éditeur de collection Titre de collection Titre de collection Abrégé  
  Volume de collection Numéro de collection Edition  
  ISSN 2470-1394 ISBN Médium  
  Région Expédition Conférence  
  Notes Approuvé pas de  
  Numéro d'Appel MARBEC @ alain.herve @ collection 2394  
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Auteur Brosset, P.; Le Bourg, B.; Costalago, D.; Banaru, D.; Van Beveren, E.; Bourdeix, J.-H.; Fromentin, J.-M.; Menard, F.; Saraux, C. doi  openurl
  Titre Linking small pelagic dietary shifts with ecosystem changes in the Gulf of Lions Type Article scientifique
  Année 2016 Publication (up) Revue Abrégée Mar. Ecol.-Prog. Ser.  
  Volume 554 Numéro Pages 157-171  
  Mots-Clés anchovy; anchovy engraulis-encrasicolus; climate; Dietary overlap; fish; food-web; NW Mediterranean; nw mediterranean sea; plankton; regime shifts; Sardine; size-fractionated zooplankton; southern benguela; Sprat; stable-isotope ratios; Trophic ecology  
  Résumé Since 2008, a severe decrease in size and body condition together with a demographic truncation has been observed in the sardine (secondarily in anchovy) population of the Gulf of Lions (NW Mediterranean Sea). In parallel, sprat biomass, which was negligible before, has increased tenfold. All of these changes have strongly affected the regional fisheries. Using trophic and isotopic data from contrasting periods of low versus high growth and condition, we investigated potential changes in diet and interspecific feeding interactions through time. Evidence of resource partitioning was found between sprat and both anchovy and sardine in 2004 and 2005. Since 2010, the isotopic niches of the 3 species have tended to overlap, suggesting higher risk of competition for food resources. Moreover, the wider trophic niche of sprat indicates higher variability in individual diets. Anchovy and sardine diet varied through time, with a high proportion of large copepods or cladocerans in periods of high growth and condition (1994 and 2007, respectively) versus a dominance of small copepods in the present (2011-2012). Furthermore, an important reduction in prey diversity was also identified in the diet of both anchovy and sardine during the most recent period. Our results support the hypothesis that changes in small pelagic fish growth, size and body condition and ultimately biomass could be due to bottom-up control characterized by changes in food availability and increasing potential trophic competition.  
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  Editeur Lieu de Publication Éditeur  
  Langue English Langue du Résumé Titre Original  
  Éditeur de collection Titre de collection Titre de collection Abrégé  
  Volume de collection Numéro de collection Edition  
  ISSN 0171-8630 ISBN Médium  
  Région Expédition Conférence  
  Notes Approuvé pas de  
  Numéro d'Appel MARBEC @ alain.herve @ collection 1642  
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Auteur Ayon, P.; Swartzman, G.; Espinoza, P.; Bertrand, A. url  doi
openurl 
  Titre Long-term changes in zooplankton size distribution in the Peruvian Humboldt Current System : conditions favouring sardine or anchovy Type Article scientifique
  Année 2011 Publication (up) Revue Abrégée Marine Ecology. Progress Series  
  Volume 422 Numéro Pages 211-222  
  Mots-Clés abundance; anchovy; Current; dominance; energetics; Euphausiids; Feeding; Humboldt; Sardine; size; System; Zooplankton  
  Résumé Changes in the size distribution of zooplankton in the Humboldt Current System have been hypothesized to underlie observed changes in sardine and anchovy populations, the dominant pelagic fish species. To examine this hypothesis, the size distribution of over 15 000 zooplankton data samples collected since the 1960s was qualitatively determined. Dominance of each size group of zooplankton (small, medium and large) and of euphausiids was modelled using generalized additive models as a function of year, latitude, time of day, distance from the 200 m isobath (a surrogate for on-shelf versus off-shelf), sea surface temperature and salinity. The temporal (yr) pattern for euphausiid dominance was highly cross-correlated (i.e. was in phase) with the time series for estimated biomass of anchovy, and small zooplankton dominance with that for estimated sardine biomass. This supports the focal hypothesis based on feeding-energetic experiments, which showed energetic advantages to sardine filter feeding on smaller zooplankton and to anchovy bite feeding on larger copepods and euphausiids. Although euphausiids predominate offshore from the shelf break, anchovy biomass is generally highest on the shelf, suggesting a possible mismatch between anchovy feeding and euphausiid dominance. However, evidence concerning the offshore expansion of the anchovy range in cooler conditions, where both anchovy and euphausiids predominate, somewhat alleviates this apparent contradiction. A strong diel component to euphausiids and large zooplankton indicated diel migration for these zooplankton groups. That anchovy will preferentially eat euphausiids when they are more available (i.e. during the night and offshore) is supported by anchovy diet data.  
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  Langue Langue du Résumé Titre Original  
  Éditeur de collection Titre de collection Titre de collection Abrégé  
  Volume de collection Numéro de collection Edition  
  ISSN 0171-8630 ISBN Médium  
  Région Expédition Conférence  
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  Numéro d'Appel LL @ pixluser @ collection 117  
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Auteur Bourgeois, S.; Hochard, S.; Pringault, O. url  doi
openurl 
  Titre Subtidal microphytobenthos: effects of inorganic and organic compound supplies on migration, production, and respiration in a tropical coastal environment Type Article scientifique
  Année 2010 Publication (up) Revue Abrégée Aquat. Microb. Ecol.  
  Volume 61 Numéro 1 Pages 13-29  
  Mots-Clés Amino acids; Autotroph-heterotroph coupling; Glucose; Nutrients; Oxygen; Reflectance; availability; benthic diatoms; chlorophyll-a fluorescence; coral-reef lagoon; headwater streams; hypersaline microbial mat; lagoon; marine; microelectrode; new-caledonia; nutrient; oxygenic photosynthesis; phytoplankton  
  Résumé Microphytobenthos (MPB) is an important primary producer in coastal ecosystems. In oligotrophic environments, its activity may be controlled by the availability of organic or inorganic compounds but also by its migration behavior. The objective of this study was to determine, in MPB-colonized subtidal sediments, the consequences of short-term enrichments (< 24 h) of organic (alanine, glutamate, and glucose) and inorganic (ammonium, phosphate) compounds on MPB vertical migration and metabolisms, net production (NP), areal gross production (AGP), and community respiration (R). Two contrasting stations located in the southwest lagoon of New Caledonia were investigated: 1 under strong anthropogenic influence and 1 under more oceanic influence. Both stations were dominated by epipelic diatoms. Differences in net primary production were explained by diurnal variation of MPB biomass at the sediment surface, showing the importance of MPB migration in the functioning of these subtidal environments. However, a stimulation or inhibition of MPB migration did not necessarily impact the net primary production of the system; this strongly depends upon the interactions between the autotrophic and heterotrophic compartments, the latter being controlled by the environmental conditions. For the station under low anthropogenic influence, AGP and R were both significantly stimulated by alanine, glucose, and ammonium, and significantly inhibited by phosphate. The similar responses of AGP and R to enrichments suggest that autotrophs and heterotrophs were tightly coupled. Conversely, in the station under strong anthropogenic influence, AGP and R responded differently. Addition of ammonium inhibited AGP without having an impact on R, whereas addition of phosphate inhibited R whilst having no measurable effect on AGP. In this station, the coupling between autotrophs and heterotrophs was weakened, suggesting that the carbon demand of the heterotrophic compartment is probably sustained by the supplies of allochthonous organic matter rather than by exudates from the autotrophic compartment.  
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  Langue English Langue du Résumé Titre Original  
  Éditeur de collection Titre de collection Titre de collection Abrégé  
  Volume de collection Numéro de collection Edition  
  ISSN 0948-3055 ISBN Médium  
  Région Expédition Conférence  
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  Numéro d'Appel MARBEC @ isabelle.vidal-ayouba @ collection 886  
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