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Auteur Sebastian, M.; Smith, A.F.; Gonzalez, J.M.; Fredricks, H.F.; Van Mooy, B.; Koblizek, M.; Brandsma, J.; Koster, G.; Mestre, M.; Mostajir, B.; Pitta, P.; Postle, A.D.; Sanchez, P.; Gasol, J.M.; Scanlan, D.J.; Chen, Y. doi  openurl
  Titre Lipid remodelling is a widespread strategy in marine heterotrophic bacteria upon phosphorus deficiency Type Article scientifique
  Année 2016 Publication Revue Abrégée Isme J.  
  Volume 10 Numéro 4 Pages 968-978  
  Mots-Clés 2 enzymes; agrobacterium-tumefaciens; bacterioplankton groups; Ecology; Mediterranean Sea; mesocosm experiment; microbial food-web; north-atlantic ocean; nutrient limitation; phosphate starvation  
  Résumé Upon phosphorus (P) deficiency, marine phytoplankton reduce their requirements for P by replacing membrane phospholipids with alternative non-phosphorus lipids. It was very recently demonstrated that a SAR11 isolate also shares this capability when phosphate starved in culture. Yet, the extent to which this process occurs in other marine heterotrophic bacteria and in the natural environment is unknown. Here, we demonstrate that the substitution of membrane phospholipids for a variety of non-phosphorus lipids is a conserved response to P deficiency among phylogenetically diverse marine heterotrophic bacteria, including members of the Alphaproteobacteria and Flavobacteria. By deletion mutagenesis and complementation in the model marine bacterium Phaeobacter sp. MED193 and heterologous expression in recombinant Escherichia coli, we confirm the roles of a phospholipase C (PlcP) and a glycosyltransferase in lipid remodelling. Analyses of the Global Ocean Sampling and Tara Oceans metagenome data sets demonstrate that PlcP is particularly abundant in areas characterized by low phosphate concentrations. Furthermore, we show that lipid remodelling occurs seasonally and responds to changing nutrient conditions in natural microbial communities from the Mediterranean Sea. Together, our results point to the key role of lipid substitution as an adaptive strategy enabling heterotrophic bacteria to thrive in the vast P-depleted areas of the ocean.  
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  Volume de collection Numéro de collection Edition  
  ISSN 1751-7362 ISBN Médium  
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  Numéro d'Appel MARBEC @ alain.herve @ collection 1624  
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Auteur Valls, A.; Coll, M.; Christensen, V. url  doi
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  Titre Keystone species : toward an operational concept for marine biodiversity conservation Type Article scientifique
  Année 2015 Publication Ecological Monographs Revue Abrégée  
  Volume 85 Numéro 1 Pages 29-47  
  Mots-Clés classification tree; Ecopath model; food-web structure; index of keystoneness; keystone species; marine ecosystems; Meta-analysis; mixed-trophic impact; rank correlation tests; scoring method  
  Résumé Various definitions and indices have been proposed in the literature to identify keystone species. In this study, we intended to make the concept of keystone species operational for marine biodiversity conservation. We used an exclusive definition of keystone species, based on the original concept of keystone predator, and derived a new functional index of keystoneness (KS) from an ecosystem-modeling approach. First, several KS indices were formulated, by combining measures of the mixed-trophic impact (MTI) and biomass of species. Then, a meta-analysis was performed, based on 101 published Ecopath food-web models, selected with a scoring method, and representative of the variety of marine ecosystems worldwide. The indices were applied to the models, and two statistical methods were compared to select the most promising KS index. Rank correlation tests were performed to assess the balance between the contribution of the impact and biomass components to the different KS indices. In addition, a classification tree was implemented, based on ecosystem-specific thresholds applied to the latter species traits, and used to confirm the identified keystone species. The selected index obtained the highest number of models with positive results from both the rank correlation tests and the classification tree. We also demonstrated the limitations of existing KS indices previously applied in the literature. Species were ranked according to their estimates of keystoneness with the selected KS index, so that potential keystone species were quantitatively identified in the 101 modeled food webs. The standardized modeling approach allowed for a comparison of the identified keystone species across models: cartilaginous fishes and toothed whales obtained the highest occurrences. Finally, the selected KS index was applied to the well-known case study of Prince William Sound (Alaska, USA). Potentially significant anthropogenic (fishing) impacts on keystone species were also considered and discussed. The operational methodology presented is directly applicable to marine food webs, and may be adapted to other (freshwater or terrestrial) systems.  
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  Volume de collection Numéro de collection Edition  
  ISSN 0012-9615 ISBN Médium  
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  Numéro d'Appel MARBEC @ isabelle.vidal-ayouba @ collection 1114  
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Auteur Brosset, P.; Le Bourg, B.; Costalago, D.; Banaru, D.; Van Beveren, E.; Bourdeix, J.-H.; Fromentin, J.-M.; Menard, F.; Saraux, C. doi  openurl
  Titre Linking small pelagic dietary shifts with ecosystem changes in the Gulf of Lions Type Article scientifique
  Année 2016 Publication Revue Abrégée Mar. Ecol.-Prog. Ser.  
  Volume 554 Numéro Pages 157-171  
  Mots-Clés anchovy; anchovy engraulis-encrasicolus; climate; Dietary overlap; fish; food-web; NW Mediterranean; nw mediterranean sea; plankton; regime shifts; Sardine; size-fractionated zooplankton; southern benguela; Sprat; stable-isotope ratios; Trophic ecology  
  Résumé Since 2008, a severe decrease in size and body condition together with a demographic truncation has been observed in the sardine (secondarily in anchovy) population of the Gulf of Lions (NW Mediterranean Sea). In parallel, sprat biomass, which was negligible before, has increased tenfold. All of these changes have strongly affected the regional fisheries. Using trophic and isotopic data from contrasting periods of low versus high growth and condition, we investigated potential changes in diet and interspecific feeding interactions through time. Evidence of resource partitioning was found between sprat and both anchovy and sardine in 2004 and 2005. Since 2010, the isotopic niches of the 3 species have tended to overlap, suggesting higher risk of competition for food resources. Moreover, the wider trophic niche of sprat indicates higher variability in individual diets. Anchovy and sardine diet varied through time, with a high proportion of large copepods or cladocerans in periods of high growth and condition (1994 and 2007, respectively) versus a dominance of small copepods in the present (2011-2012). Furthermore, an important reduction in prey diversity was also identified in the diet of both anchovy and sardine during the most recent period. Our results support the hypothesis that changes in small pelagic fish growth, size and body condition and ultimately biomass could be due to bottom-up control characterized by changes in food availability and increasing potential trophic competition.  
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  Éditeur de collection Titre de collection Titre de collection Abrégé  
  Volume de collection Numéro de collection Edition  
  ISSN 0171-8630 ISBN Médium  
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  Numéro d'Appel MARBEC @ alain.herve @ collection 1642  
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Auteur Coll, M.; Steenbeek, J.; Sole, J.; Palomera, I.; Christensen, V. doi  openurl
  Titre Modelling the cumulative spatial-temporal effects of environmental drivers and fishing in a NW Mediterranean marine ecosystem Type Article scientifique
  Année 2016 Publication Revue Abrégée Ecol. Model.  
  Volume 331 Numéro Pages 100-114  
  Mots-Clés acoustic estimation; anchovy engraulis-encrasicolus; climate-change; Cumulative effects; Ecopath with Ecosim; environment; european hake; exploited ecosystems; fishing; food-web model; food webs; hake merluccius-merluccius; protected areas; south catalan sea; trawling disturbance  
  Résumé To realistically predict spatial-temporal dynamics of species in marine ecosystems it is essential to consider environmental conditions in conjunction with human activities and food web dynamics. In this study, we used Ecospace, the spatial-temporal dynamic module of Ecopath with Ecosim (EwE) food web model, to drive a spatially explicit marine food web model representing the Southern Catalan Sea (NW Mediterranean) with various environmental drivers and with fishing. We then evaluated the individual and joint effects of environmental conditions and fishing in various compartments of the food web. First we used a previously developed EwE model fitted to time series of data from 1978 to 2010 as a baseline configuration. The model included 40 functional groups and four fishing fleets. We first ran the original Ecospace spatial-temporal dynamic model using the original habitat configuration, in addition to fishing, and we predicted species distributions and abundances. Afterwards, we ran the new habitat foraging capacity model using the most important environmental drivers linked with the Ebro River delta dynamics (salinity, temperature, and primary production), in addition to depth, substrate and fishing, and we compared results with those from the original implementation of Ecospace. Three commercial species, European hake (Merluccius merluccius), anchovy (Engraulis encrasicolus) and sardine (Sardina pilchardus), were used to analyse results. Species distributions more closely matched the empirical information available from the study area when using the new habitat capacity model. Results suggested that the historical impacts of fishing and environmental conditions on the biomass and distributions of hake, anchovy and sardine were not additive, but mainly cumulative with a synergistic or antagonistic effect. Fishing had the highest impact on spatial modelling results while the spatial distribution of primary producers and depth followed in importance. This study contributes to the development of more reliable predictions of regional change in marine ecosystems of the Mediterranean Sea. (C) 2016 Elsevier B.V. All rights reserved.  
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  Langue English Langue du Résumé Titre Original  
  Éditeur de collection Titre de collection Titre de collection Abrégé  
  Volume de collection Numéro de collection Edition  
  ISSN 0304-3800 ISBN Médium  
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  Numéro d'Appel MARBEC @ alain.herve @ collection 1643  
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Auteur Sirot, C.; Gronkjaer, P.; Pedersen, J.B.; Panfili, J.; Zetina-Rejon, M.; Tripp-Valdez, A.; Ramos-Miranda, J.; Flores-Hernandez, D.; Sosa-Lopez, A.; Darnaude, A.M. doi  openurl
  Titre Using otolith organic matter to detect diet shifts in Bardiella chrysoura, during a period of environmental changes Type Article scientifique
  Année 2017 Publication Revue Abrégée Mar. Ecol.-Prog. Ser.  
  Volume 575 Numéro Pages 137-152  
  Mots-Clés aquatic ecosystems; Bairdiella chrysoura; climate-change; Coastal ecosystem; fish otoliths; food-web; movement patterns; prey availability; Stable isotope analysis; stable-isotope analysis; survival; temporal-changes; terminos lagoon; Trophic ecology; Trophic interactions  
  Résumé Accurate knowledge on fish trophic ecology and its modifications is crucial for understanding the impact of global change on ecosystems. In this context, we investigated the value of the delta C-13 and delta N-15 of otolith soluble organic matter (SOM) for identifying temporal diet shifts in American silver perch Bairdiella chrysoura over a 30-yr period characterized by strong changes in its population size and habitats within the Terminos Lagoon (Mexico). We first compared the otolith SOM isotopic signatures from present-clay adults to those of muscle and the main local prey. Our results suggest that otolith SOM can be confidently extracted and analyzed for both present and past otoliths of this species. The mean otolith SOM signatures obtained (-15.92 +/- 1.35%, for delta C-13 and 9.38 +/- 0.93%, for delta N-15) were consistent with those of the diet as 85% of the individual signatures were included within the prey isotopic niche area. Moreover, this study supports a trophic enrichment factor between diet and otolith (TEFdiet-otolith) close to 0 for delta N-15, while for delta C-13, the TEFololith-muscle of +0.02% warrants further investigation. Then, we compared past and contemporary otolith SOM signatures to investigate temporal diet shifts in B. chrysoura. This showed that 613C and delta N-15 differed significantly between the past and present period even if the temporal shift remained relatively small (respectively +1.17%, and 0.55%). The present study substantiates the use of otolith SOM delta C-13 and delta N-15 as a proxy of fish present and past trophic position, opening the possibility for major progress in studies of temporal changes in food web ecology.  
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  Langue English Langue du Résumé Titre Original  
  Éditeur de collection Titre de collection Titre de collection Abrégé  
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  ISSN 0171-8630 ISBN Médium  
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  Numéro d'Appel MARBEC @ alain.herve @ collection 2172  
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