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Auteur Danovaro, R.; Fanelli, E.; Canals, M.; Ciuffardi, T.; Fabri, M.-C.; Taviani, M.; Argyrou, M.; Azzurro, E.; Bianchelli, S.; Cantafaro, A.; Carugati, L.; Corinaldesi, C.; de Haan, W.P.; Dell'Anno, A.; Evans, J.; Foglini, F.; Galil, B.; Gianni, M.; Goren, M.; Greco, S.; Grimalt, J.; Guell-Bujons, Q.; Jadaud, A.; Knittweis, L.; Lopez, J.L.; Sanchez-Vidal, A.; Schembri, P.J.; Snelgrove, P.; Vaz, S. doi  openurl
  Titre Towards a marine strategy for the deep Mediterranean Sea: Analysis of current ecological status Type Article scientifique
  Année 2020 Publication Revue Abrégée Mar. Pol.  
  Volume 112 Numéro Pages (down) 103781  
  Mots-Clés atmospheric deposition; Deep-sea ecosystems; downward particle fluxes; food-web structure; Marine strategy framework directive; Mediterranean basin; mercury bioaccumulation; particulate matter; polycyclic aromatic-hydrocarbons; seismic surveys; stable-isotopes; submarine canyons; trophic ecology  
  Résumé The Marine Strategy Framework Directive (MSFD), introduced in June 2008, was adopted to achieve a Good Environmental Status (GES) in the Ell's marine waters and to protect resources of socio-economic interest. The MSFD exerts to the marine area over which a Member State exercises jurisdictional rights in accordance with the United Nations Convention on the Law of the Sea (UNCLOS), including the deep-sea waters, seafloor and subseafloor of the Exclusive Economic Zones (EEZ). However, currently the MSFD focuses on coastal habitats and the shallow-water seafloor to the detriment of the deeper habitats. Despite the huge dimension of the deep sea (below 200 m of depth) covering more than 65% of the Earth's surface and including >95% of the global biosphere, the relevance of the dark portion of the seas and oceans is still almost completely neglected. Given the important bi-directional links between shallow and deep ecosystems, there is a clear need for extending the implementation of the MSFD into the deep sea, to define a sound ecosystem-based approach for the management and protection of deep-sea ecosystems and attain GES. We assembled data on drivers, anthropogenic pressures and impacts concerning the MSFD descriptors pertaining to the Mediterranean deep sea. We list deep-sea monitoring activities and the main sources providing benchmark conditions, and discuss knowledge and geographic coverage gaps. MSFD descriptors apply to the deep sea as to coastal waters, and ought to be monitored contemporaneously. We provide recommendations for guidelines for future deep-sea monitoring in the Mediterranean Sea.  
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  Langue English Langue du Résumé Titre Original  
  Éditeur de collection Titre de collection Titre de collection Abrégé  
  Volume de collection Numéro de collection Edition  
  ISSN 0308-597x ISBN Médium  
  Région Expédition Conférence  
  Notes WOS:000515208000012 Approuvé pas de  
  Numéro d'Appel MARBEC @ isabelle.vidal-ayouba @ collection 2749  
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Auteur Sebastian, M.; Smith, A.F.; Gonzalez, J.M.; Fredricks, H.F.; Van Mooy, B.; Koblizek, M.; Brandsma, J.; Koster, G.; Mestre, M.; Mostajir, B.; Pitta, P.; Postle, A.D.; Sanchez, P.; Gasol, J.M.; Scanlan, D.J.; Chen, Y. doi  openurl
  Titre Lipid remodelling is a widespread strategy in marine heterotrophic bacteria upon phosphorus deficiency Type Article scientifique
  Année 2016 Publication Revue Abrégée Isme J.  
  Volume 10 Numéro 4 Pages (down) 968-978  
  Mots-Clés 2 enzymes; agrobacterium-tumefaciens; bacterioplankton groups; Ecology; Mediterranean Sea; mesocosm experiment; microbial food-web; north-atlantic ocean; nutrient limitation; phosphate starvation  
  Résumé Upon phosphorus (P) deficiency, marine phytoplankton reduce their requirements for P by replacing membrane phospholipids with alternative non-phosphorus lipids. It was very recently demonstrated that a SAR11 isolate also shares this capability when phosphate starved in culture. Yet, the extent to which this process occurs in other marine heterotrophic bacteria and in the natural environment is unknown. Here, we demonstrate that the substitution of membrane phospholipids for a variety of non-phosphorus lipids is a conserved response to P deficiency among phylogenetically diverse marine heterotrophic bacteria, including members of the Alphaproteobacteria and Flavobacteria. By deletion mutagenesis and complementation in the model marine bacterium Phaeobacter sp. MED193 and heterologous expression in recombinant Escherichia coli, we confirm the roles of a phospholipase C (PlcP) and a glycosyltransferase in lipid remodelling. Analyses of the Global Ocean Sampling and Tara Oceans metagenome data sets demonstrate that PlcP is particularly abundant in areas characterized by low phosphate concentrations. Furthermore, we show that lipid remodelling occurs seasonally and responds to changing nutrient conditions in natural microbial communities from the Mediterranean Sea. Together, our results point to the key role of lipid substitution as an adaptive strategy enabling heterotrophic bacteria to thrive in the vast P-depleted areas of the ocean.  
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  Éditeur de collection Titre de collection Titre de collection Abrégé  
  Volume de collection Numéro de collection Edition  
  ISSN 1751-7362 ISBN Médium  
  Région Expédition Conférence  
  Notes Approuvé pas de  
  Numéro d'Appel MARBEC @ alain.herve @ collection 1624  
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Auteur Shannon, L.J.; Coll, M.; Yemane, D.; Jouffre, D.; Neira, S.; Bertrand, A.; Diaz, E.; Shin, Y.J. url  doi
openurl 
  Titre Comparing data-based indicators across upwelling and comparable systems for communicating ecosystem states and trends Type Article scientifique
  Année 2010 Publication Revue Abrégée ICES J. Mar. Sci.  
  Volume 67 Numéro 4 Pages (down) 807-832  
  Mots-Clés adriatic sea; central chile; comparative approach; demersal resources; fishing impacts; food-web; global fisheries; humboldt current system; indicator; nw mediterranean sea; pelagic fish; regime shifts; southern benguela; upwelling  
  Résumé Shannon, L. J., Coll, M., Yemane, D., Jouffre, D., Neira, S., Bertrand, A., Diaz, E., and Shin, Y-J. 2010. Comparing data-based indicators across upwelling and comparable systems for communicating ecosystem states and trends. – ICES Journal of Marine Science, 67: 807-832.  
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  Volume de collection Numéro de collection Edition  
  ISSN 1054-3139 ISBN Médium  
  Région Expédition Conférence  
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  Numéro d'Appel MARBEC @ isabelle.vidal-ayouba @ collection 482  
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Auteur Villeger, S.; Brosse, S.; Mouchet, M.; Mouillot, D.; Vanni, M.J. doi  openurl
  Titre Functional ecology of fish: current approaches and future challenges Type Article scientifique
  Année 2017 Publication Revue Abrégée Aquat. Sci.  
  Volume 79 Numéro 4 Pages (down) 783-801  
  Mots-Clés biodiversity; centrarchid fishes; coral-reef fishes; dietary-morphological relationships; ecosystem processes; Ecosystem services; fish; food-web; fresh-water fish; functional trait; global change; labrid fishes; life-history strategies; ocean; phosphorus-limitation; population regulation; river  
  Résumé Fish communities face increasing anthropogenic pressures in freshwater and marine ecosystems that modify their biodiversity and threaten the services they supply to human populations. To address these issues, studies have been increasingly focusing on functions of fish that are linked to their main ecological roles in aquatic ecosystems. Fish are indeed known to control other organisms through predation, mediate nutrient fluxes, and can act as ecosystem engineers. Here for each of the key functions played by fish, we present the functional traits that have already been used to assess them. We include traits measurable from observations on living individuals, morphological features measured on preserved organisms or traits categorized using information from the literature, and we discuss their respective advantages and limitations. We then list future research directions to foster a more complete functional approach for fish ecology that needs to incorporate functional traits describing, food provisioning and cultural services while accounting more frequently for intraspecific variability. Finally, we highlight ecological and evolutionary questions that could be addressed using meta-analyses of large trait databases, and how a trait-based framework could provide valuable insights on the mechanistic links between global changes, functional diversity of fish assemblages, and ecosystem services.  
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  Éditeur de collection Titre de collection Titre de collection Abrégé  
  Volume de collection Numéro de collection Edition  
  ISSN 1015-1621 ISBN Médium  
  Région Expédition Conférence  
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  Numéro d'Appel MARBEC @ alain.herve @ collection 2211  
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Auteur Galiana, N.; Lurgi, M.; Claramunt-Lopez, B.; Fortin, M.-J.; Leroux, S.; Cazelles, K.; Gravel, D.; Montoya, J.M. doi  openurl
  Titre The spatial scaling of species interaction networks Type Article scientifique
  Année 2018 Publication Revue Abrégée Nat. Ecol. Evol.  
  Volume 2 Numéro 5 Pages (down) 782-790  
  Mots-Clés area relationships; biodiversity; competition; diversity; ecological networks; extinction; food-web structure; habitat loss; source-sink metacommunities; trophic interactions  
  Résumé Species-area relationships (SARs) are pivotal to understand the distribution of biodiversity across spatial scales. We know little, however, about how the network of biotic interactions in which biodiversity is embedded changes with spatial extent. Here we develop a new theoretical framework that enables us to explore how different assembly mechanisms and theoretical models affect multiple properties of ecological networks across space. We present a number of testable predictions on network-area relationships (NARs) for multi-trophic communities. Network structure changes as area increases because of the existence of different SARs across trophic levels, the preferential selection of generalist species at small spatial extents and the effect of dispersal limitation promoting beta-diversity. Developing an understanding of NARs will complement the growing body of knowledge on SARs with potential applications in conservation ecology. Specifically, combined with further empirical evidence, NARs can generate predictions of potential effects on ecological communities of habitat loss and fragmentation in a changing world.  
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  Langue English Langue du Résumé Titre Original  
  Éditeur de collection Titre de collection Titre de collection Abrégé  
  Volume de collection Numéro de collection Edition  
  ISSN 2397-334x ISBN Médium  
  Région Expédition Conférence  
  Notes Approuvé pas de  
  Numéro d'Appel MARBEC @ alain.herve @ collection 2339  
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