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Auteur Coll, M.; Steenbeek, J.; Sole, J.; Palomera, I.; Christensen, V. doi  openurl
  Titre Modelling the cumulative spatial-temporal effects of environmental drivers and fishing in a NW Mediterranean marine ecosystem Type Article scientifique
  Année 2016 Publication Revue Abrégée Ecol. Model.  
  Volume 331 Numéro Pages 100-114  
  Mots-Clés acoustic estimation; anchovy engraulis-encrasicolus; climate-change; Cumulative effects; Ecopath with Ecosim; environment; european hake; exploited ecosystems; fishing; food-web model; food webs; hake merluccius-merluccius; protected areas; south catalan sea; trawling disturbance  
  Résumé To realistically predict spatial-temporal dynamics of species in marine ecosystems it is essential to consider environmental conditions in conjunction with human activities and food web dynamics. In this study, we used Ecospace, the spatial-temporal dynamic module of Ecopath with Ecosim (EwE) food web model, to drive a spatially explicit marine food web model representing the Southern Catalan Sea (NW Mediterranean) with various environmental drivers and with fishing. We then evaluated the individual and joint effects of environmental conditions and fishing in various compartments of the food web. First we used a previously developed EwE model fitted to time series of data from 1978 to 2010 as a baseline configuration. The model included 40 functional groups and four fishing fleets. We first ran the original Ecospace spatial-temporal dynamic model using the original habitat configuration, in addition to fishing, and we predicted species distributions and abundances. Afterwards, we ran the new habitat foraging capacity model using the most important environmental drivers linked with the Ebro River delta dynamics (salinity, temperature, and primary production), in addition to depth, substrate and fishing, and we compared results with those from the original implementation of Ecospace. Three commercial species, European hake (Merluccius merluccius), anchovy (Engraulis encrasicolus) and sardine (Sardina pilchardus), were used to analyse results. Species distributions more closely matched the empirical information available from the study area when using the new habitat capacity model. Results suggested that the historical impacts of fishing and environmental conditions on the biomass and distributions of hake, anchovy and sardine were not additive, but mainly cumulative with a synergistic or antagonistic effect. Fishing had the highest impact on spatial modelling results while the spatial distribution of primary producers and depth followed in importance. This study contributes to the development of more reliable predictions of regional change in marine ecosystems of the Mediterranean Sea. (C) 2016 Elsevier B.V. All rights reserved.  
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  ISSN 0304-3800 ISBN Médium  
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  Numéro d'Appel MARBEC @ alain.herve @ collection 1643  
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Auteur Albo-Puigserver, M.; Munoz, A.; Navarro, J.; Coll, M.; Pethybridge, H.; Sanchez, S.; Palomera, I. doi  openurl
  Titre Ecological energetics of forage fish from the Mediterranean Sea: Seasonal dynamics and interspecific differences Type Article scientifique
  Année 2017 Publication Revue Abrégée Deep-Sea Res. Part II-Top. Stud. Oceanogr.  
  Volume 140 Numéro Pages 74-82  
  Mots-Clés anchovy engraulis-encrasicolus; Bioenergetics; climate-change; diet composition; Energy density; environmental variability; feeding-habits; food webs; horse mackerel; Mediterranean Sea; north aegean sea; osteichthyes carangidae; sardine sardina-pilchardus; small pelagic fish  
  Résumé Small and medium pelagic fishes play a central role in marine food webs by transferring energy from plankton to top predators. In this study, direct calorimetry was used to analyze the energy density of seven pelagic species collected over four seasons from the western Mediterranean Sea: anchovy Engraulis encrasicolus, sardine Sardina pilchardus, round sardinella Sardinella aurita, horse mackerels Trachurus trachurus and T. mediterraneus, and mackerels Scomber scombrus and S. colias. Inter-specific differences in energy density were linked to spawning period, energy allocation strategies for reproduction and growth, and feeding ecologies. Energy density of each species varied over time, with the exception of S. colitis, likely due to its high energetic requirements related to migration throughout the year. In general, higher energy density was observed in spring for all species, regardless of their breeding strategy, probably as a consequence of the late-winter phytoplankton bloom. These results provide new insights into the temporal availability of energy in the pelagic ecosystem of the Mediterranean Sea, which are pivotal for understanding how the population dynamics of small and medium pelagic fishes and their predators may respond to environmental changes and fishing impacts. In addition, the differences found in energy density between species highlighted the importance of using species specific energy values in ecosystem assessment tools such as bioenergetic and food web models.  
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  ISSN 0967-0645 ISBN Médium  
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  Numéro d'Appel MARBEC @ alain.herve @ collection 2176  
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Auteur Cazelles, K.; Mouquet, N.; Mouillot, D.; Gravel, D. doi  openurl
  Titre On the integration of biotic interaction and environmental constraints at the biogeographical scale Type Article scientifique
  Année 2016 Publication Revue Abrégée Ecography  
  Volume 39 Numéro 10 Pages 921-931  
  Mots-Clés biodiversity; climate-change; cooccurrence; distributions; ecological communities; evolutionary; food webs; networks; niche; species distribution models  
  Résumé Biogeography is primarily concerned with the spatial distribution of biodiversity, including performing scenarios in a changing environment. The efforts deployed to develop species distribution models have resulted in predictive tools, but have mostly remained correlative and have largely ignored biotic interactions. Here we build upon the theory of island biogeography as a first approximation to the assembly dynamics of local communities embedded within a metacommunity context. We include all types of interactions and introduce environmental constraints on colonization and extinction dynamics. We develop a probabilistic framework based on Markov chains and derive probabilities for the realization of species assemblages, rather than single species occurrences. We consider the expected distribution of species richness under different types of ecological interactions. We also illustrate the potential of our framework by studying the interplay between different ecological requirements, interactions and the distribution of biodiversity along an environmental gradient. Our framework supports the idea that the future research in biogeography requires a coherent integration of several ecological concepts into a single theory in order to perform conceptual and methodological innovations, such as the switch from single-species distribution to community distribution.  
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  ISSN 0906-7590 ISBN Médium  
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  Numéro d'Appel MARBEC @ alain.herve @ collection 1683  
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Auteur Escalas, A.; Ferraton, F.; Paillon, C.; Vidy, G.; Carcaillet, F.; Salen-Picard, C.; Le Loc'h, F.; Richard, P.; Darnaude, A.M. doi  openurl
  Titre Spatial variations in dietary organic matter sources modulate the size and condition of fish juveniles in temperate lagoon nursery sites Type Article scientifique
  Année 2015 Publication Revue Abrégée Estuar. Coast. Shelf Sci.  
  Volume 152 Numéro Pages 78-90  
  Mots-Clés coastal lagoon; continental inputs; diet; fish; food webs; fresh-water flow; gilthead sea bream; isotope ratios; lagoon; marine nurseries; nursery; sole solea-solea; sparus-aurata; Stable isotopes; stable-isotopes; trophic ecology  
  Résumé Effective conservation of marine fish stocks involves understanding the impact, on population dynamics, of intra-specific variation in nursery habitats use at the juvenile stage. In some regions, an important part of the catching effort is concentrated on a small number of marine species that colonize coastal lagoons during their first year of life. To determine the intra-specific variation in lagoon use by these fish and their potential demographic consequences, we studied diet spatiotemporal variations in the group 0 juveniles of a highly exploited sparid, the gilthead seabream (Sparus aurata L), during their similar to 6 months stay in a NW Mediterranean lagoon (N = 331, SL = 25-198 mm) and traced the origin of the organic matter in their food webs, at two lagoon sites with contrasted continental inputs. This showed that the origin (marine, lagoonal or continental) of the organic matter (OM) available in the water column and the sediment can vary substantially within the same lagoon, in line with local variations in the intensity of marine and continental inputs. The high trophic plasticity of S. aurata allows its juveniles to adapt to resulting differences in prey abundances at each site during their lagoon residency, thereby sustaining high growth irrespective of the area inhabited within the lagoon. However, continental POM incorporation by the juveniles through their diet (of 21-37% on average depending on the site) is proportional to its availability in the environment and could be responsible for the greater fish sizes (of 28 mm SL on average) and body weights (of 40.8 g on average) observed at the site under continental influence in the autumn, when the juveniles are ready to leave the lagoon. This suggests that continental inputs in particulate OM, when present, could significantly enhance fish growth within coastal lagoons, with important consequences on the local population dynamics of the fish species that use them as nurseries. As our results indicate that continental OM can represent up to 62% of the flesh of the juveniles originating from these ecosystems, particular care should be taken to preserve or improve the chemical quality of riverine inputs to coastal lagoons. (C) 2014 Elsevier Ltd. All rights reserved.  
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  ISSN 0272-7714 ISBN Médium  
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  Numéro d'Appel MARBEC @ alain.herve @ collection 1192  
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Auteur Campbell, S.J.; Darling, E.S.; Pardede, S.; Ahmadia, G.; Mangubhai, S.; Amkieltiela; Estradivari; Maire, E. doi  openurl
  Titre Fishing restrictions and remoteness deliver conservation outcomes for Indonesia's coral reef fisheries Type Article scientifique
  Année 2020 Publication Revue Abrégée Conserv. Lett.  
  Volume Numéro Pages e12698  
  Mots-Clés data-poor fisheries; dynamics; food webs; gear restrictions; management; marine protected areas; small-scale fisheries; South East Asia; targets  
  Résumé Coral reef fisheries depend on reef fish biomass to support ecosystem functioning and sustainable fisheries. Here, we evaluated coral reefs across 4,000 km of the Indonesian archipelago to reveal a large gradient of biomass, from 17,000 kg/ha. Trophic pyramids characterized by planktivore dominance emerged at high biomass, suggesting the importance of pelagic pathways for reef productivity. Total biomass and the biomass of most trophic groups were higher within gear restricted and no-take management, but the greatest biomass was found on unmanaged remote reefs. Within marine protected areas (MPAs), 41.6% and 43.6% of gear restricted and no-take zones, respectively, met a global biomass target of 500 kg/ha, compared with 71.8% of remote sites. To improve conservation outcomes for Indonesia's biodiverse and economically important coral reef fisheries, our results suggest to: (1) strengthen management within Indonesia's existing MPAs and (2) precautionarily manage remote reefs with high biomass.  
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  ISSN 1755-263x ISBN Médium  
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  Numéro d'Appel MARBEC @ isabelle.vidal-ayouba @ collection 2733  
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