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Auteur Cresson, P.; Chouvelon, T.; Bustamante, P.; Bănaru, D.; Baudrier, J.; Le Loc'h, F.; Mauffret, A.; Mialet, B.; Spitz, J.; Wessel, N.; Briand, M.J.; Denamiel, M.; Doray, M.; Guillou, G.; Jadaud, A.; Lazard, C.; Noûs, C.; Prieur, S.; Rouquette, M.; Saraux, C.; Serre, S.; Timmerman, C.-A.; Verin, Y.; Harmelin-Vivien, M. url  doi
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  Titre Primary production and depth drive different trophic structure and functioning of fish assemblages in French marine ecosystems Type Article scientifique
  Année 2020 Publication Revue Abrégée Progress in Oceanography  
  Volume Numéro Pages 102343  
  Mots-Clés benthic-pelagic coupling; fish community; food webs; trophodynamics  
  Résumé Investigating the drivers of fish assemblage trophic structure is a critical question, in order to better understand ecosystem functioning, predict the effects of perturbations and implement integrated management of exploited marine ecosystems. Ecosystemic surveys enabled the determination of the trophic structure of the fish assemblages in three French marine ecosystems, namely the Eastern English Channel, the Bay of Biscay and the Gulf of Lions, through the simultaneous collection of qualitative (stable isotopes and energy content) and quantitative (biomass) data. In the Bay of Biscay and in the Gulf of Lions, pelagic primary production supported at least 80% of the fish biomass production, and explained the dominance of pelagic species, but with differences resulting from the different productivity. The lower productivity in the oligotrophic Gulf of Lions led to a lower total biomass, energy density as well as the predominance of zooplankton feeders. In contrast, fluxes in the Bay of Biscay were sufficient to support a higher biomass of pelagic piscivores, and of species with higher energy content. In the shallow Eastern English Channel, the respective contributions of pelagic and benthic sources were similar. Bentho-demersal species of higher trophic level dominated this assemblage, because of their ability to exploit both pathways. Results of the present study confirmed that fisheries-focused surveys can be used as efficient platforms to address questions about ecosystem functioning. Here it confirmed the expected differences between ecosystems and the importance of primary production and environment as drivers of fish assemblage structure and functioning. Future studies should nevertheless develop new methods to better assess the paramount role of low trophic level consumers.  
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  ISSN (up) 0079-6611 ISBN Médium  
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Auteur Escalas, A.; Ferraton, F.; Paillon, C.; Vidy, G.; Carcaillet, F.; Salen-Picard, C.; Le Loc'h, F.; Richard, P.; Darnaude, A.M. doi  openurl
  Titre Spatial variations in dietary organic matter sources modulate the size and condition of fish juveniles in temperate lagoon nursery sites Type Article scientifique
  Année 2015 Publication Revue Abrégée Estuar. Coast. Shelf Sci.  
  Volume 152 Numéro Pages 78-90  
  Mots-Clés coastal lagoon; continental inputs; diet; fish; food webs; fresh-water flow; gilthead sea bream; isotope ratios; lagoon; marine nurseries; nursery; sole solea-solea; sparus-aurata; Stable isotopes; stable-isotopes; trophic ecology  
  Résumé Effective conservation of marine fish stocks involves understanding the impact, on population dynamics, of intra-specific variation in nursery habitats use at the juvenile stage. In some regions, an important part of the catching effort is concentrated on a small number of marine species that colonize coastal lagoons during their first year of life. To determine the intra-specific variation in lagoon use by these fish and their potential demographic consequences, we studied diet spatiotemporal variations in the group 0 juveniles of a highly exploited sparid, the gilthead seabream (Sparus aurata L), during their similar to 6 months stay in a NW Mediterranean lagoon (N = 331, SL = 25-198 mm) and traced the origin of the organic matter in their food webs, at two lagoon sites with contrasted continental inputs. This showed that the origin (marine, lagoonal or continental) of the organic matter (OM) available in the water column and the sediment can vary substantially within the same lagoon, in line with local variations in the intensity of marine and continental inputs. The high trophic plasticity of S. aurata allows its juveniles to adapt to resulting differences in prey abundances at each site during their lagoon residency, thereby sustaining high growth irrespective of the area inhabited within the lagoon. However, continental POM incorporation by the juveniles through their diet (of 21-37% on average depending on the site) is proportional to its availability in the environment and could be responsible for the greater fish sizes (of 28 mm SL on average) and body weights (of 40.8 g on average) observed at the site under continental influence in the autumn, when the juveniles are ready to leave the lagoon. This suggests that continental inputs in particulate OM, when present, could significantly enhance fish growth within coastal lagoons, with important consequences on the local population dynamics of the fish species that use them as nurseries. As our results indicate that continental OM can represent up to 62% of the flesh of the juveniles originating from these ecosystems, particular care should be taken to preserve or improve the chemical quality of riverine inputs to coastal lagoons. (C) 2014 Elsevier Ltd. All rights reserved.  
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Auteur Coll, M.; Steenbeek, J.; Sole, J.; Palomera, I.; Christensen, V. doi  openurl
  Titre Modelling the cumulative spatial-temporal effects of environmental drivers and fishing in a NW Mediterranean marine ecosystem Type Article scientifique
  Année 2016 Publication Revue Abrégée Ecol. Model.  
  Volume 331 Numéro Pages 100-114  
  Mots-Clés acoustic estimation; anchovy engraulis-encrasicolus; climate-change; Cumulative effects; Ecopath with Ecosim; environment; european hake; exploited ecosystems; fishing; food-web model; food webs; hake merluccius-merluccius; protected areas; south catalan sea; trawling disturbance  
  Résumé To realistically predict spatial-temporal dynamics of species in marine ecosystems it is essential to consider environmental conditions in conjunction with human activities and food web dynamics. In this study, we used Ecospace, the spatial-temporal dynamic module of Ecopath with Ecosim (EwE) food web model, to drive a spatially explicit marine food web model representing the Southern Catalan Sea (NW Mediterranean) with various environmental drivers and with fishing. We then evaluated the individual and joint effects of environmental conditions and fishing in various compartments of the food web. First we used a previously developed EwE model fitted to time series of data from 1978 to 2010 as a baseline configuration. The model included 40 functional groups and four fishing fleets. We first ran the original Ecospace spatial-temporal dynamic model using the original habitat configuration, in addition to fishing, and we predicted species distributions and abundances. Afterwards, we ran the new habitat foraging capacity model using the most important environmental drivers linked with the Ebro River delta dynamics (salinity, temperature, and primary production), in addition to depth, substrate and fishing, and we compared results with those from the original implementation of Ecospace. Three commercial species, European hake (Merluccius merluccius), anchovy (Engraulis encrasicolus) and sardine (Sardina pilchardus), were used to analyse results. Species distributions more closely matched the empirical information available from the study area when using the new habitat capacity model. Results suggested that the historical impacts of fishing and environmental conditions on the biomass and distributions of hake, anchovy and sardine were not additive, but mainly cumulative with a synergistic or antagonistic effect. Fishing had the highest impact on spatial modelling results while the spatial distribution of primary producers and depth followed in importance. This study contributes to the development of more reliable predictions of regional change in marine ecosystems of the Mediterranean Sea. (C) 2016 Elsevier B.V. All rights reserved.  
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Auteur Cazelles, K.; Mouquet, N.; Mouillot, D.; Gravel, D. doi  openurl
  Titre On the integration of biotic interaction and environmental constraints at the biogeographical scale Type Article scientifique
  Année 2016 Publication Revue Abrégée Ecography  
  Volume 39 Numéro 10 Pages 921-931  
  Mots-Clés biodiversity; climate-change; cooccurrence; distributions; ecological communities; evolutionary; food webs; networks; niche; species distribution models  
  Résumé Biogeography is primarily concerned with the spatial distribution of biodiversity, including performing scenarios in a changing environment. The efforts deployed to develop species distribution models have resulted in predictive tools, but have mostly remained correlative and have largely ignored biotic interactions. Here we build upon the theory of island biogeography as a first approximation to the assembly dynamics of local communities embedded within a metacommunity context. We include all types of interactions and introduce environmental constraints on colonization and extinction dynamics. We develop a probabilistic framework based on Markov chains and derive probabilities for the realization of species assemblages, rather than single species occurrences. We consider the expected distribution of species richness under different types of ecological interactions. We also illustrate the potential of our framework by studying the interplay between different ecological requirements, interactions and the distribution of biodiversity along an environmental gradient. Our framework supports the idea that the future research in biogeography requires a coherent integration of several ecological concepts into a single theory in order to perform conceptual and methodological innovations, such as the switch from single-species distribution to community distribution.  
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  ISSN (up) 0906-7590 ISBN Médium  
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Auteur Duffy, L.M.; Kuhnert, P.; Pethybridge, H.R.; Young, J.W.; Olson, R.J.; Logan, J.M.; Goñi, N.; Romanov, E.; Allain, V.; Staudinger, M.; Abecassis, M.; Choy, C.A.; Hobday, A.J.; Simier, M.; Galván-Magaña, F.; Potier, M.; Ménard, F. url  doi
openurl 
  Titre Global trophic ecology of yellowfin, bigeye, and albacore tunas: understanding predation on micronekton communities at ocean-basin scales Type Article scientifique
  Année 2017 Publication Revue Abrégée Deep Sea Research Part II: Topical Studies in Oceanography  
  Volume 140 Numéro Pages 55-73  
  Mots-Clés classification trees; climate changes; ecosystems; food webs; inter-ocean comparison; macroecology; Meta-analysis; trophic relationships  
  Résumé Predator-prey interactions for three commercially valuable tuna species: yellowfin (Thunnus albacares), bigeye (T. obesus), and albacore (T. alalunga), collected over a 40-year period from the Pacific, Indian, and Atlantic Oceans, were used to quantitatively assess broad, macro-scale trophic patterns in pelagic ecosystems. Analysis of over 14,000 tuna stomachs, using a modified classification tree approach, revealed for the first time the global expanse of pelagic predatory fish diet and global patterns of micronekton diversity. Ommastrephid squids were consistently one of the top prey groups by weight across all tuna species and in most ocean bodies. Interspecific differences in prey were apparent, with epipelagic scombrid and mesopelagic paralepidid fishes globally important for yellowfin and bigeye tunas, respectively, while vertically-migrating euphausiid crustaceans were important for albacore tuna in the Atlantic and Pacific Oceans. Diet diversity showed global and regional patterns among tuna species. In the central and western Pacific Ocean, characterized by low productivity, a high diversity of micronekton prey was consumed while low prey diversity was evident in highly productive coastal waters where upwelling occurs. Spatial patterns of diet diversity were most variable in yellowfin and bigeye tunas while a latitudinal diversity gradient was observed with lower diversity in temperate regions for albacore tuna. Sea-surface temperature was a reasonable predictor of the diets of yellowfin and bigeye tunas, whereas chlorophyll-a was the best environmental predictor of albacore diet. These results suggest that the ongoing expansion of warmer, less productive waters in the world’s oceans may alter foraging opportunities for tunas due to regional changes in prey abundances and compositions.  
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