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Auteur (up) Durand, J.-D.; Hubert, N.; Shen, K.-N.; Borsa, P. doi  openurl
  Titre DNA barcoding grey mullets Type Article scientifique
  Année 2017 Publication Revue Abrégée Rev. Fish. Biol. Fish.  
  Volume 27 Numéro 1 Pages 233-243  
  Mots-Clés coi; fish assemblages; genetics; identification; level; management; marine fishes; maximum-parsimony methods; mitochondrial phylogeny; Mugilidae; new-caledonia; south-america; species diversity; Taxonomy; teleostei mugilidae  
  Résumé Despite the ecological and commercial importance of grey mullets (fish family Mugilidae), their taxonomy and systematics are still much debated. Reasons for this are the low level of morphometric variability and the relatively poor phylogenetic information borne by the morpho-anatomical characters used thus far in diagnosing species. Here, we evaluate the potential of DNA barcoding to accurately delineate species and assign unknown specimens to taxa in the family Mugilidae. Our reference sample consists of 257 individuals from 91 lineages characterized by their nucleotide sequences at the COI, cytochrome b, and 16S rRNA loci. These lineages correspond to 55 species according to the current taxonomy, and 36 presumed cryptic species. All known and presumed cryptic species within the 'Mugil cephalus' (n = 15) and 'M. curema' (n = 6) species complexes, as well as within genera Chelon (n = 10), Crenimugil (n = 6), Osteomugil (n = 6), and Planiliza (n = 18) were successfully recovered as distinct lineages by COI gene sequences (598 bp), demonstrating the utility of this marker to delineate species in the family Mugilidae. Inconsistencies in the labeling of sequences deposited in GenBank were ascribed to species misidentification. A proportion of these misidentifications occurred in the course of dedicated barcoding surveys, further emphasizing the need for an accurate and exhaustive reference barcoding database for Mugilidae.  
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  Langue English Langue du Résumé Titre Original  
  Éditeur de collection Titre de collection Titre de collection Abrégé  
  Volume de collection Numéro de collection Edition  
  ISSN 0960-3166 ISBN Médium  
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  Numéro d'Appel MARBEC @ alain.herve @ collection 2109  
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Auteur (up) Durand, J.D.; Shen, K.N.; Chen, W.J.; Jamandre, B.W.; Blel, H.; Diop, K.; Nirchio, M.; de Leon, F.J.G.; Whitfield, A.K.; Chang, C.W.; Borsa, P. url  doi
openurl 
  Titre Systematics of the grey mullets (Teleostei: Mugiliformes: Mugilidae): Molecular phylogenetic evidence challenges two centuries of morphology-based taxonomy Type Article scientifique
  Année 2012 Publication Revue Abrégée Mol. Phylogenet. Evol.  
  Volume 64 Numéro 1 Pages 73-92  
  Mots-Clés 16S rRNA; Cryptic species; Cytochrome b; Cytochrome oxidase I; Phylogeny; cephalus; divergence; fishes; gray mullets; mitochondrial-dna sequence; mtdna segments; pcr-rflp-analysis; ribosomal-rna genes; species mugilidae; striped mullet  
  Résumé The family Mugilidae comprises mainly coastal marine species that a:e widely distributed in all tropical, subtropical and temperate seas. Mugilid species are generally considered to be ecologically important and they are a major food resource for human populations in certain parts of the world. The taxonomy and systematics of the Mugilidae are still much debated and based primarily on morphological characters. In this study, we provide the first comprehensive molecular systematic account of the Mugilidae using phylogenetic analyses of nucleotide sequence variation at three mitochondrial loci (16S rRNA, cytochrome oxidase 1, and cytochrome b) for 257 individuals from 55 currently recognized species. The study covers all 20 mugilid genera currently recognized as being valid. The family comprises seven major lineages that radiated early on from the ancestor to all current forms. All genera that were represented by two species or more, except Cestraeus, turned out to be paraphyletic or polyphyletic. Thus, the present phylogenetic results generally disagree with the current taxonomy at the genus level and imply that the anatomical characters used for the systematics of the Mugilidae may be poorly informative phylogenetically. The present results should provide a sound basis for a taxonomic revision of the mugilid genera. A proportion of the species with large distribution ranges (including Moolgarda seheli, Mugil cephalus and M. curema) appear to consist of cryptic species, thus warranting further taxonomic and genetic work at the infra-generic level. (c) 2012 Elsevier Inc. All rights reserved.  
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  Langue English Langue du Résumé Titre Original  
  Éditeur de collection Titre de collection Titre de collection Abrégé  
  Volume de collection Numéro de collection Edition  
  ISSN 1055-7903 ISBN Médium  
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  Numéro d'Appel MARBEC @ isabelle.vidal-ayouba @ collection 880  
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Auteur (up) Elleouet, J.; Albouy, C.; Ben Rais Lasram, F.; Mouillot, D.; Leprieur, F. url  doi
openurl 
  Titre A trait-based approach for assessing and mapping niche overlap between native and exotic species: the Mediterranean coastal fish fauna as a case study Type Article scientifique
  Année 2014 Publication Revue Abrégée Diversity and Distributions  
  Volume 20 Numéro 11 Pages 1333-1344  
  Mots-Clés Biological invasions; coastal fishes; endemic species; exotic species; functional traits; Mediterranean Sea; niche overlap  
  Résumé Aim We propose a trait-based approach for assessing and mapping potential niche overlap between native and exotic species at large spatial scales. Location The Mediterranean Sea. Methods We developed two complementary indices based on ecological, biological and ecomorphological similarities between native and exotic species. The first index (FNNr) allows identifying areas where native species are the most at risk in terms of potential ecological interactions with exotic species. The second index (FGO) is species-specific and allows identifying native species that display the broadest functional niche overlap and range overlap with exotic species. We illustrated our approach using the Mediterranean coastal fish fauna as a case study. Results We found that endemic and exotic fishes had a similar global functional niche at the Mediterranean scale, that is, they filled the same functional space defined by trait axes. FNNr hotspots were found to be moderately congruent with exotic species richness hotspots. Higher values of FNNr were observed along the coasts of the Levantine Sea. The computation of the FGO index showed that the geographical range of a given endemic species overlapped in average with 52 exotic species. Species showing the highest FGO values displayed localized and/or fragmented distributions in the eastern Mediterranean basin. Main conclusions Our findings suggest that the number of exotic species alone cannot be used as a broad-scale indicator of potential impact because this metric does not account for functional relatedness between native and exotic species. The trait-based indices developed in this study can be used for other taxa in both aquatic and terrestrial ecosystems and should help environmental managers to set up local-scale studies on areas where the potential impact of exotic species on native biodiversity is the highest.  
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  Langue Langue du Résumé Titre Original  
  Éditeur de collection Titre de collection Titre de collection Abrégé  
  Volume de collection Numéro de collection Edition  
  ISSN 1472-4642 ISBN Médium  
  Région Expédition Conférence  
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  Numéro d'Appel MARBEC @ alain.herve @ collection 1165  
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Auteur (up) Evans, S.M.; McKenna, C.; Simpson, S.D.; Tournois, J.; Genner, M.J. doi  openurl
  Titre Patterns of species range evolution in Indo-Pacific reef assemblages reveal the Coral Triangle as a net source of transoceanic diversity Type Article scientifique
  Année 2016 Publication Revue Abrégée Biol. Lett.  
  Volume 12 Numéro 6 Pages 20160090  
  Mots-Clés Bayesian skyline plot; biogeography; climate change; coral reef; fishes global patterns; marine biodiversity; ocean; phylogeography; refugia; species distributions  
  Résumé The Coral Triangle in the Indo-Pacific is a region renowned for exceptional marine biodiversity. The area could have acted as a 'centre of origin' where speciation has been prolific or a 'centre of survival' by providing refuge during major environmental shifts such as sea-level changes. The region could also have acted as a 'centre of accumulation' for species with origins outside of the Coral Triangle, owing to it being at a central position between the Indian and Pacific oceans. Here, we investigated support for these hypotheses using population-level DNA sequence-based reconstructions of the range evolution of 45 species (314 populations) of Indo-Pacific reef-associated organisms. Our results show that populations undergoing the most ancient establishment were significantly more likely to be closer to the centre of the Coral Triangle than to peripheral locations. The data are consistent with the Coral Triangle being a net source of coral-reef biodiversity for the Indo-Pacific region, suggesting that the region has acted primarily as a centre of survival, a centre of origin or both. These results provide evidence of how a key location can influence the large-scale distributions of biodiversity over evolutionary timescales.  
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  Langue English Langue du Résumé Titre Original  
  Éditeur de collection Titre de collection Titre de collection Abrégé  
  Volume de collection Numéro de collection Edition  
  ISSN 1744-9561 ISBN Médium  
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  Numéro d'Appel MARBEC @ alain.herve @ collection 1694  
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Auteur (up) Filmalter, J.D.; Cowley, P.D.; Potier, M.; Menard, F.; Smale, M.J.; Cherel, Y.; Dagorn, L. doi  openurl
  Titre Feeding ecology of silky sharks Carcharhinus falciformis associated with floating objects in the western Indian Ocean Type Article scientifique
  Année 2017 Publication Revue Abrégée J. Fish Biol.  
  Volume 90 Numéro 4 Pages 1321-1337  
  Mots-Clés atlantic; By-catch; diet; ecosystem; fad; fish aggregating devices; fish aggregation device; food-consumption; isurus-oxyrinchus; pacific-ocean; pelagic fishes; Pelagic shark; Purse-seine fishery; shortfin mako; Yellowfin tuna  
  Résumé The silky shark Carcharhinus falciformis is commonly associated with floating objects, including fish aggregating devices (FADs), in the Indian Ocean. While the motives for this associative behaviour are unclear, it does make them vulnerable to capture in the tuna purse seine fishery that makes extensive use of FADs. Here, the diet of 323 C. falciformis, caught at FADs in the Indian Ocean, was investigated to test the hypothesis that trophic benefits explain the associative behaviour. A high proportion of stomachs with fresh contents (57%) suggested that extensive feeding activity occurred while associated with FADs. Multiple dietary indices showed that typical non-associative prey types dominated, but were supplemented with fishes typically found at FADs. While the trophic benefits of FAD association may be substantial, our results suggest that associative behaviour is not driven solely by feeding. (C) 2016 The Fisheries Society of the British Isles  
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  Langue English Langue du Résumé Titre Original  
  Éditeur de collection Titre de collection Titre de collection Abrégé  
  Volume de collection Numéro de collection Edition  
  ISSN 0022-1112 ISBN Médium  
  Région Expédition Conférence  
  Notes Approuvé pas de  
  Numéro d'Appel MARBEC @ alain.herve @ collection 2142  
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