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Auteur Pommier, T.; Douzery, E.J.P.; Mouillot, D. url  doi
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  Titre Environment drives high phylogenetic turnover among oceanic bacterial communities Type Article scientifique
  Année 2012 Publication (up) Revue Abrégée Biol. Lett.  
  Volume 8 Numéro 4 Pages 562-566  
  Mots-Clés Biogeography; connectivity; diversity; dynamics; patterns; phylogenetic turnover  
  Résumé Although environmental filtering has been observed to influence the biodiversity patterns of marine bacterial communities, it was restricted to the regional scale and to the species level, leaving the main drivers unknown at large biogeographic scales and higher taxonomic levels. Bacterial communities with different species compositions may nevertheless share phylogenetic lineages, and phylogenetic turnover (PT) among those communities may be surprisingly low along any biogeographic or environmental gradient. Here, we investigated the relative influence of environmental filtering and geographical distance on the PT between marine bacterial communities living more than 8000 km apart in contrasted abiotic conditions. PT was high between communities and was more structured by local environmental factors than by geographical distance, suggesting the predominance of a lineage filtering process. Strong phenotype-environment mismatches observed in the ocean may surpass high connectivity between marine microbial communities.  
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  Editeur Lieu de Publication Éditeur  
  Langue English Langue du Résumé Titre Original  
  Éditeur de collection Titre de collection Titre de collection Abrégé  
  Volume de collection Numéro de collection Edition  
  ISSN 1744-9561 ISBN Médium  
  Région Expédition Conférence  
  Notes Approuvé pas de  
  Numéro d'Appel MARBEC @ isabelle.vidal-ayouba @ collection 567  
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Auteur Bender, M.G.; Leprieur, F.; Mouillot, D.; Kulbicki, M.; Parravicini, V.; Pie, M.R.; Barneche, D.R.; Oliveira-Santos, L.G.R.; Floeter, S.R. doi  openurl
  Titre Isolation drives taxonomic and functional nestedness in tropical reef fish faunas Type Article scientifique
  Année 2017 Publication (up) Revue Abrégée Ecography  
  Volume 40 Numéro 3 Pages 425-435  
  Mots-Clés assembly rules; biodiversity; communities; coral-reef; diversity; global patterns; islands; null model analysis; species richness; traits  
  Résumé Taxonomic nestedness, the degree to which the taxonomic composition of species-poor assemblages represents a subset of richer sites, commonly occurs in habitat fragments and islands differing in size and isolation from a source pool. However, species are not ecologically equivalent and the extent to which nestedness is observed in terms of functional trait composition of assemblages still remains poorly known. Here, using an extensive database on the functional traits and the distributions of 6316 tropical reef fish species across 169 sites, we assessed the levels of taxonomical vs functional nestedness of reef fish assemblages at the global scale. Functional nestedness was considerably more common than taxonomic nestedness, and generally associated with geographical isolation, where nested subsets are gradually more isolated from surrounding reef areas and from the center of biodiversity. Because a nested pattern in functional composition implies that certain combinations of traits may be represented by few species, we identified these groups of low redundancy that include large herbivore-detritivores and omnivores, small piscivores, and macro-algal herbivores. The identified patterns of nestedness may be an outcome of the interaction between species dispersal capabilities, resource requirements, and gradients of isolation among habitats. The importance of isolation in generating the observed pattern of functional nestedness within biogeographic regions may indicate that disturbance in depauperate and isolated sites can have disproportionate effects on the functional structure of their reef fish assemblages.  
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  Editeur Lieu de Publication Éditeur  
  Langue English Langue du Résumé Titre Original  
  Éditeur de collection Titre de collection Titre de collection Abrégé  
  Volume de collection Numéro de collection Edition  
  ISSN 0906-7590 ISBN Médium  
  Région Expédition Conférence  
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  Numéro d'Appel MARBEC @ alain.herve @ collection 2107  
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Auteur Ottimofiore, E.; Albouy, C.; Leprieur, F.; Descombes, P.; Kulbicki, M.; Mouillot, D.; Parravicini, V.; Pellissier, L. doi  openurl
  Titre Responses of coral reef fishes to past climate changes are related to life-history traits Type Article scientifique
  Année 2017 Publication (up) Revue Abrégée Ecol. Evol.  
  Volume 7 Numéro 6 Pages 1996-2005  
  Mots-Clés climate change; dispersal; diversity; environmental-change; future; global patterns; Indo-Pacific Ocean; range shifts; refugia; richness; sea-level; species distribution; species distribution models; temperature  
  Résumé Coral reefs and their associated fauna are largely impacted by ongoing climate change. Unravelling species responses to past climatic variations might provide clues on the consequence of ongoing changes. Here, we tested the relationship between changes in sea surface temperature and sea levels during the Quaternary and present-day distributions of coral reef fish species. We investigated whether species-specific responses are associated with life-history traits. We collected a database of coral reef fish distribution together with life-history traits for the Indo-Pacific Ocean. We ran species distribution models (SDMs) on 3,725 tropical reef fish species using contemporary environmental factors together with a variable describing isolation from stable coral reef areas during the Quaternary. We quantified the variance explained independently by isolation from stable areas in the SDMs and related it to a set of species traits including body size and mobility. The variance purely explained by isolation from stable coral reef areas on the distribution of extant coral reef fish species largely varied across species. We observed a triangular relationship between the contribution of isolation from stable areas in the SDMs and body size. Species, whose distribution is more associated with historical changes, occurred predominantly in the Indo-Australian archipelago, where the mean size of fish assemblages is the lowest. Our results suggest that the legacy of habitat changes of the Quaternary is still detectable in the extant distribution of many fish species, especially those with small body size and the most sedentary. Because they were the least able to colonize distant habitats in the past, fish species with smaller body size might have the most pronounced lags in tracking ongoing climate change.  
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  Langue English Langue du Résumé Titre Original  
  Éditeur de collection Titre de collection Titre de collection Abrégé  
  Volume de collection Numéro de collection Edition  
  ISSN 2045-7758 ISBN Médium  
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  Numéro d'Appel MARBEC @ alain.herve @ collection 2108  
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Auteur Durand, J.-D.; Hubert, N.; Shen, K.-N.; Borsa, P. doi  openurl
  Titre DNA barcoding grey mullets Type Article scientifique
  Année 2017 Publication (up) Revue Abrégée Rev. Fish. Biol. Fish.  
  Volume 27 Numéro 1 Pages 233-243  
  Mots-Clés coi; fish assemblages; genetics; identification; level; management; marine fishes; maximum-parsimony methods; mitochondrial phylogeny; Mugilidae; new-caledonia; south-america; species diversity; Taxonomy; teleostei mugilidae  
  Résumé Despite the ecological and commercial importance of grey mullets (fish family Mugilidae), their taxonomy and systematics are still much debated. Reasons for this are the low level of morphometric variability and the relatively poor phylogenetic information borne by the morpho-anatomical characters used thus far in diagnosing species. Here, we evaluate the potential of DNA barcoding to accurately delineate species and assign unknown specimens to taxa in the family Mugilidae. Our reference sample consists of 257 individuals from 91 lineages characterized by their nucleotide sequences at the COI, cytochrome b, and 16S rRNA loci. These lineages correspond to 55 species according to the current taxonomy, and 36 presumed cryptic species. All known and presumed cryptic species within the 'Mugil cephalus' (n = 15) and 'M. curema' (n = 6) species complexes, as well as within genera Chelon (n = 10), Crenimugil (n = 6), Osteomugil (n = 6), and Planiliza (n = 18) were successfully recovered as distinct lineages by COI gene sequences (598 bp), demonstrating the utility of this marker to delineate species in the family Mugilidae. Inconsistencies in the labeling of sequences deposited in GenBank were ascribed to species misidentification. A proportion of these misidentifications occurred in the course of dedicated barcoding surveys, further emphasizing the need for an accurate and exhaustive reference barcoding database for Mugilidae.  
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  Langue English Langue du Résumé Titre Original  
  Éditeur de collection Titre de collection Titre de collection Abrégé  
  Volume de collection Numéro de collection Edition  
  ISSN 0960-3166 ISBN Médium  
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  Notes Approuvé pas de  
  Numéro d'Appel MARBEC @ alain.herve @ collection 2109  
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Auteur Massol, F.; Altermatt, F.; Gounand, I.; Gravel, D.; Leibold, M.A.; Mouquet, N. doi  openurl
  Titre How life-history traits affect ecosystem properties: effects of dispersal in meta-ecosystems Type Article scientifique
  Année 2017 Publication (up) Revue Abrégée Oikos  
  Volume 126 Numéro 4 Pages 532-546  
  Mots-Clés colonization trade-off; ecological stoichiometry; interaction strengths; neutral metacommunities; pond metacommunities; predator-prey interactions; source-sink metacommunities; species-diversity; terrestrial food webs; theoretical framework  
  Résumé The concept of life-history traits and the study of these traits are the hallmark of population biology. Acknowledging their variability and evolution has allowed us to understand how species adapt in response to their environment. The same traits are also involved in how species alter ecosystems and shape their dynamics and functioning. Some theories, such as the metabolic theory of ecology, ecological stoichiometry or pace-of-life theory, already recognize this junction, but only do so in an implicitly non-spatial context. Meanwhile, for a decade now, it has been argued that ecosystem properties have to be understood at a larger scale using meta-ecosystem theory because source-sink dynamics, community assembly and ecosystem stability are all modified by spatial structure. Here, we argue that some ecosystem properties can be linked to a single life-history trait, dispersal, i.e. the tendency of organisms to live, compete and reproduce away from their birth place. By articulating recent theoretical and empirical studies linking ecosystem functioning and dynamics to species dispersal, we aim to highlight both the known connections between life-history traits and ecosystem properties and the unknown areas, which deserve further empirical and theoretical developments.  
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  Auteur institutionnel Thèse  
  Editeur Lieu de Publication Éditeur  
  Langue English Langue du Résumé Titre Original  
  Éditeur de collection Titre de collection Titre de collection Abrégé  
  Volume de collection Numéro de collection Edition  
  ISSN 0030-1299 ISBN Médium  
  Région Expédition Conférence  
  Notes Approuvé pas de  
  Numéro d'Appel MARBEC @ alain.herve @ collection 2120  
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