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Auteur Jacquet, C.; Mouillot, D.; Kulbicki, M.; Gravel, D. doi  openurl
  Titre Extensions of Island Biogeography Theory predict the scaling of functional trait composition with habitat area and isolation Type Article scientifique
  Année 2017 Publication Revue Abrégée Ecol. Lett.  
  Volume 20 Numéro 2 Pages 135-146  
  Mots-Clés Allometric theory; animal abundance; body-size; body-size distributions; complex food webs; coral-reef fishes; diversity; Ecology; evolution; Food web; global patterns; island biogeography; population-density; species richness; tropical reefs  
  Résumé The Theory of Island Biogeography (TIB) predicts how area and isolation influence species richness equilibrium on insular habitats. However, the TIB remains silent about functional trait composition and provides no information on the scaling of functional diversity with area, an observation that is now documented in many systems. To fill this gap, we develop a probabilistic approach to predict the distribution of a trait as a function of habitat area and isolation, extending the TIB beyond the traditional species-area relationship. We compare model predictions to the body-size distribution of piscivorous and herbivorous fishes found on tropical reefs worldwide. We find that small and isolated reefs have a higher proportion of large-sized species than large and connected reefs. We also find that knowledge of species body-size and trophic position improves the predictions of fish occupancy on tropical reefs, supporting both the allometric and trophic theory of island biogeography. The integration of functional ecology to island biogeography is broadly applicable to any functional traits and provides a general probabilistic approach to study the scaling of trait distribution with habitat area and isolation.  
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  Langue English Langue du Résumé Titre Original (up)  
  Éditeur de collection Titre de collection Titre de collection Abrégé  
  Volume de collection Numéro de collection Edition  
  ISSN 1461-023x ISBN Médium  
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  Numéro d'Appel MARBEC @ alain.herve @ collection 2087  
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Auteur Coll, M.; Steenbeek, J. doi  openurl
  Titre Standardized ecological indicators to assess aquatic food webs: The ECOIND software plug-in for Ecopath with Ecosim models Type Article scientifique
  Année 2017 Publication Revue Abrégée Environ. Modell. Softw.  
  Volume 89 Numéro Pages 120-130  
  Mots-Clés biodiversity; Conservation; Ecological standardized indicators; Ecopath with Ecosim; ecospace; Ecosystem indicators; Environmental status; Fisheries management; Food web models; impacts; index; marine ecosystems; Mediterranean Sea; network analysis; ocean; Software plug-in  
  Résumé Ecological indicators are useful tools to analyse and communicate historical changes in ecosystems and plausible future scenarios while evaluating environmental status. Here we introduce a new plug-in to the Ecopath with Ecosim (EwE) food web modelling approach, which is widely used to quantitatively describe aquatic ecosystems. The plug-in (ECOIND) calculates standardized ecological indicators. We describe the primary functionality of ECOIND and provide an example of its application in both static and temporal-spatial dynamic modelling, while we highlight several related features including a new taxonomy input database (species traits) and the ability to analyse input uncertainty on output results. ECOIND adds new capabilities to the widely used EwE food web modelling approach and enables broadening its applications into biodiversity and conservation-based frameworks to contribute to integrated ecosystem analyses. (C) 2016 Elsevier Ltd. All rights reserved.  
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  Langue English Langue du Résumé Titre Original (up)  
  Éditeur de collection Titre de collection Titre de collection Abrégé  
  Volume de collection Numéro de collection Edition  
  ISSN 1364-8152 ISBN Médium  
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  Numéro d'Appel MARBEC @ alain.herve @ collection 2088  
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Auteur Abgrall, C.; Chauvat, M.; Langlois, E.; Hedde, M.; Mouillot, D.; Salmon, S.; Winck, B.; Forey, E. doi  openurl
  Titre Shifts and linkages of functional diversity between above- and below-ground compartments along a flooding gradient Type Article scientifique
  Année 2017 Publication Revue Abrégée Funct. Ecol.  
  Volume 31 Numéro 2 Pages 350-360  
  Mots-Clés biodiversity; community assembly; community ecology; disturbance; divergence; environmental gradient; feeding guilds; functional traits; microarthropod communities; null models; patterns; plant; plant communities; soil collembola; soil-plant interactions; species traits; trait convergence and trait divergence  
  Résumé 1. Trait-based approaches have the potential to reveal general and predictive relationships between organisms and ecosystem functioning. However, the mechanisms underlying the functional structure of communities are still unclear. Within terrestrial ecosystems, several studies have shown that many ecological processes are controlled by the interacting above-and belowground compartments. However, few studies have used traits to reveal the functional relationships between plants and soil fauna. Mostly, research combining plants and soil fauna solely used the traits of one assemblage in predictive studies. 2. Above-ground (plants) and below-ground (Collembola) compartments were sampled over a flooding gradient in northern France along the Seine River. First, we measured the effect of flooding on functional and taxonomic assembly within both communities. We then considered the linkages between plant and Collembolan species richness, community traits and assessed whether traits of both compartments converged at high flooding intensity (abiotic filtering) and diverged when this constraint is released (biotic filtering). 3. Species richness of both taxa followed the same bell-shaped pattern along the gradient, while a similar significant pattern of functional richness was only observed for plants. Further analyses revealed a progressive shift from trait convergence to divergence for plants, but not for Collembola, as constraints intensity decreased. Instead, our results highlighted that Collembola traits were mainly linked to the variations in plant traits. This leads, within Collembola assemblages, to convergence of a subset of perception and habitat-related traits for which the relationship with plant traits was assessed. 4. Synthesis. Using a trait-based approach, our study highlighted that functional relationships occur between above-and below-ground compartments. We underlined that functional composition of plant communities plays a key role in structuring Collembola assemblages in addition to the role of abiotic variables. Our study clearly shows that functional diversity provides a new approach to link the above-and below-ground compartments and might, therefore, be further considered when studying ecological processes at the interface between both compartments.  
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  Langue English Langue du Résumé Titre Original (up)  
  Éditeur de collection Titre de collection Titre de collection Abrégé  
  Volume de collection Numéro de collection Edition  
  ISSN 0269-8463 ISBN Médium  
  Région Expédition Conférence  
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  Numéro d'Appel MARBEC @ alain.herve @ collection 2091  
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Auteur Le Chevanton, M.; Garnier, M.; Bougaran, G.; Schreiber, N.; Lukomska, E.; Bérard, J.B.; Fouilland, E.; Bernard, O.; Cadoret, J.P. url  doi
openurl 
  Titre Screening and selection of growth-promoting bacteria for Dunaliella cultures Type Article scientifique
  Année 2013 Publication Revue Abrégée Algal Research  
  Volume 2 Numéro Pages 212-222  
  Mots-Clés Bacterial diversity; Dunaliella; Interaction; bacteria; microalgae  
  Résumé  
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  Langue Langue du Résumé Titre Original (up)  
  Éditeur de collection Titre de collection Titre de collection Abrégé  
  Volume de collection Numéro de collection Edition  
  ISSN 2211-9264 ISBN Médium  
  Région Expédition Conférence  
  Notes Approuvé pas de  
  Numéro d'Appel MARBEC @ isabelle.vidal-ayouba @ collection 815  
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Auteur Caro, A.; Escalas, A.; Bouvier, C.; Grousset, E.; Lautredou-Audouy, N.; Roques, C.; Charmantier, M.; Gros, O. url  doi
openurl 
  Titre Epibiotic bacterial community of Sphaeroma serratum (Crustacea, Isopoda): relationship with molt status Type Article scientifique
  Année 2012 Publication Revue Abrégée Mar. Ecol.-Prog. Ser.  
  Volume 457 Numéro Pages 11-27  
  Mots-Clés 16s ribosomal-rna; Crustacean; DGGE band pattern; Epibiotic biofilm; Molt cycle; Sphaeroma; fish; gastropod; gradient gel-electrophoresis; hydrothermal-vent; in-situ hybridization; mid-atlantic ridge; oxidizing bacteria; phylogenetic diversity; riftia-pachyptila; shrimp rimicaris-exoculata; urothoe-poseidonis  
  Résumé Sphaeroma serratum is a marine isopod species that inhabits seashores from Europe to West Africa. The individuals live under stones in direct contact with reduced sediments and harbour a diverse bacterial community on the cuticle of their pleopods. We investigated the diversity of these epibiotic bacteria on male (pubescent and senescent) and female specimens with electron microscopic observations and molecular tools. The microbial community of S. serratum was shown to be composed of at least 5 bacterial morphotypes observed on the pleopodal cuticle in all male specimens. Using fluorescence in situ hybridization, we identified 5 major phylogenetic groups (alpha-, beta-, gamma- and delta-Proteobacteria and Archaea) whereas denaturing gradient gel electrophoresis (DGGE) of PCR-amplified 16S rRNA gene fragments of epibiotic bacteria revealed 50 bands. The bacterial community associated with S. serratum seems more diverse than in other marine crustaceans, such as Rimicaris. The relative diversity of this bacterial community was also studied in relation to the molt cycle. The comparison of DGGE band patterns of several individuals from female, pubescent male and senescent male groups revealed that the bacterial community diversity was dependent on the sex and the age of the individuals and more generally on the molt status.  
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  Langue English Langue du Résumé Titre Original (up)  
  Éditeur de collection Titre de collection Titre de collection Abrégé  
  Volume de collection Numéro de collection Edition  
  ISSN 0171-8630 ISBN Médium  
  Région Expédition Conférence  
  Notes Approuvé pas de  
  Numéro d'Appel MARBEC @ isabelle.vidal-ayouba @ collection 564  
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