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Auteur Chu, T.V.; Torréton, J.-P.; Mari, X.; Nguyen, H.M.T.; Pham, K.T.; Pham, T.T.; Bouvier, T.; Bettarel, Y.; Pringault, O.; Bouvier, C.; Rochelle-Newall, E. url  doi
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  Titre Nutrient ratios and the complex structure of phytoplankton communities in a highly turbid estuary of Southeast Asia Type Article scientifique
  Année 2014 Publication Revue Abrégée Environ Monit Assess  
  Volume 186 Numéro 12 Pages (down) 8555-8572  
  Mots-Clés Hab; Phytoplankton diversity; Southeast Asia; vietnam  
  Résumé  
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  Auteur institutionnel Thèse  
  Editeur Lieu de Publication Éditeur  
  Langue English Langue du Résumé Titre Original  
  Éditeur de collection Titre de collection Titre de collection Abrégé  
  Volume de collection Numéro de collection Edition  
  ISSN 0167-6369 ISBN Médium  
  Région Expédition Conférence  
  Notes Approuvé pas de  
  Numéro d'Appel MARBEC @ alain.herve @ collection 1161  
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Auteur Saeedi, H.; Reimer, J.D.; Brandt, M.; Dumais, P.-O.; Jazdzewska, A.M.; Jeffery, N.W.; Thielen, P.M.; Costello, M.J. doi  openurl
  Titre Global marine biodiversity in the context of achieving the Aichi Targets: ways forward and addressing data gaps Type Article scientifique
  Année 2019 Publication Revue Abrégée PeerJ  
  Volume 7 Numéro Pages (down) e7221  
  Mots-Clés Aichi targets; assemblages; benefits; Biodiversity tools and pipelines; Biogeography; conservation; coral-reefs; Data standard; Data standards; deep-sea; Discovery; Dissemination; diversity gradient; life; Marine biodiversity; patterns; Prediction; progress; species richness; Stewardship; Stewardship and dissemination; Tools and pipelines  
  Résumé In 2010, the Conference of the Parties of the Convention on Biological Diversity agreed on the Strategic Plan for Biodiversity 2011-2020 in Aichi Prefecture, Japan. As this plan approaches its end, we discussed whether marine biodiversity and prediction studies were nearing the Aichi Targets during the 4th World Conference on Marine Biodiversity held in Montreal, Canada in June 2018. This article summarises the outcome of a five-day group discussion on how global marine biodiversity studies should be focused further to better understand the patterns of biodiversity. We discussed and reviewed seven fundamental biodiversity priorities related to nine Aichi Targets focusing on global biodiversity discovery and predictions to improve and enhance biodiversity data standards (quantity and quality), tools and techniques, spatial and temporal scale framing, and stewardship and dissemination. We discuss how identifying biodiversity knowledge gaps and promoting efforts have and will reduce such gaps, including via the use of new databases, tools and technology, and how these resources could be improved in the future. The group recognised significant progress toward Target 19 in relation to scientific knowledge, but negligible progress with regard to Targets 6 to 13 which aimed to safeguard and reduce human impacts on biodiversity.  
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  Langue English Langue du Résumé Titre Original  
  Éditeur de collection Titre de collection Titre de collection Abrégé  
  Volume de collection Numéro de collection Edition  
  ISSN 2167-8359 ISBN Médium  
  Région Expédition Conférence  
  Notes WOS:000493041100001 Approuvé pas de  
  Numéro d'Appel MARBEC @ isabelle.vidal-ayouba @ collection 2682  
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Auteur Lliros, M.; Gich, F.; Plasencia, A.; Auguet, J.C.; Darchambeau, F.; Casamayor, E.O.; Descy, J.P.; Borrego, C. doi  openurl
  Titre Vertical distribution of ammonia-oxidizing crenarchaeota and methanogens in the epipelagic waters of Lake Kivu (Rwanda-Democratic Republic of the Congo) Type Article scientifique
  Année 2010 Publication Revue Abrégée Appl Environ Microbiol  
  Volume 76 Numéro 20 Pages (down) 6853-6863  
  Mots-Clés 16S/genetics Sequence Analysis; Ammonia/*metabolism Animals *Biodiversity Cluster Analysis Crenarchaeota/*classification/genetics/isolation & purification/*metabolism DNA Fingerprinting DNA; Archaeal/chemistry/genetics DNA; Archaeal/genetics RNA; DNA Sequence Homology; Fluorescence Methane/*metabolism Molecular Sequence Data Nucleic Acid Denaturation Oxidation-Reduction Phylogeny Polymerase Chain Reaction RNA; Nucleic Acid *Water Microbiology; Polyacrylamide Gel Genes; Ribosomal; Ribosomal/chemistry/genetics Democratic Republic of the Congo Electrophoresis; rRNA In Situ Hybridization  
  Résumé Four stratified basins in Lake Kivu (Rwanda-Democratic Republic of the Congo) were sampled in March 2007 to investigate the abundance, distribution, and potential biogeochemical role of planktonic archaea. We used fluorescence in situ hybridization with catalyzed-reported deposition microscopic counts (CARD-FISH), denaturing gradient gel electrophoresis (DGGE) fingerprinting, and quantitative PCR (qPCR) of signature genes for ammonia-oxidizing archaea (16S rRNA for marine Crenarchaeota group 1.1a [MCG1] and ammonia monooxygenase subunit A [amoA]). Abundance of archaea ranged from 1 to 4.5% of total DAPI (4',6-diamidino-2-phenylindole) counts with maximal concentrations at the oxic-anoxic transition zone ( approximately 50-m depth). Phylogenetic analysis of the archaeal planktonic community revealed a higher level of richness of crenarchaeal 16S rRNA gene sequences (21 of the 28 operational taxonomic units [OTUs] identified [75%]) over euryarchaeotal ones (7 OTUs). Sequences affiliated with the kingdom Euryarchaeota were mainly recovered from the anoxic water compartment and mostly grouped into methanogenic lineages (Methanosarcinales and Methanocellales). In turn, crenarchaeal phylotypes were recovered throughout the sampled epipelagic waters (0- to 100-m depth), with clear phylogenetic segregation along the transition from oxic to anoxic water masses. Thus, whereas in the anoxic hypolimnion crenarchaeotal OTUs were mainly assigned to the miscellaneous crenarchaeotic group, the OTUs from the oxic-anoxic transition and above belonged to Crenarchaeota groups 1.1a and 1.1b, two lineages containing most of the ammonia-oxidizing representatives known so far. The concomitant vertical distribution of both nitrite and nitrate maxima and the copy numbers of both MCG1 16S rRNA and amoA genes suggest the potential implication of Crenarchaeota in nitrification processes occurring in the epilimnetic waters of the lake.  
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  Numéro d'Appel MARBEC @ isabelle.vidal-ayouba @ collection 1303  
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Auteur Cahill, A.E.; De Jode, A.; Dubois, S.; Bouzaza, Z.; Aurelle, D.; Boissin, E.; Chabrol, O.; David, R.; Egea, E.; Ledoux, J.-B.; Mérigot, B.; Weber, A.A.-T.; Chenuil, A. doi  openurl
  Titre A multispecies approach reveals hot spots and cold spots of diversity and connectivity in invertebrate species with contrasting dispersal modes Type Article scientifique
  Année 2017 Publication Revue Abrégée Mol. Ecol.  
  Volume 26 Numéro 23 Pages (down) 6563-6577  
  Mots-Clés genetic diversity; dispersal; life-history traits; reef fishes; marine connectivity; pelagic larval duration; mediterranean sea; amphipholis-squamata; brooding brittle star; coralligenous assemblages; larvae; marine invertebrates; phylogeographical breaks; population structure; population genetic-structure; species genetic diversity correlation  
  Résumé Genetic diversity is crucial for species' maintenance and persistence, yet is often overlooked in conservation studies. Species diversity is more often reported due to practical constraints, but it is unknown if these measures of diversity are correlated. In marine invertebrates, adults are often sessile or sedentary and populations exchange genes via dispersal of gametes and larvae. Species with a larval period are expected to have more connected populations than those without larval dispersal. We assessed the relationship between measures of species and genetic diversity, and between dispersal ability and connectivity. We compiled data on genetic patterns and life history traits in nine species across five phyla. Sampling sites spanned 600km in the northwest Mediterranean Sea and focused on a 50-km area near Marseilles, France. Comparative population genetic approaches yielded three main results. (i) Species without larvae showed higher levels of genetic structure than species with free-living larvae, but the role of larval type (lecithotrophic or planktotrophic) was negligible. (ii) A narrow area around Marseilles, subject to offshore advection, limited genetic connectivity in most species. (iii) We identified sites with significant positive contributions to overall genetic diversity across all species, corresponding with areas near low human population densities. In contrast, high levels of human activity corresponded with a negative contribution to overall genetic diversity. Genetic diversity within species was positively and significantly linearly related to local species diversity. Our study suggests that local contribution to overall genetic diversity should be taken into account for future conservation strategies.  
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  Langue English Langue du Résumé Titre Original  
  Éditeur de collection Titre de collection Titre de collection Abrégé  
  Volume de collection Numéro de collection Edition  
  ISSN 0962-1083 ISBN Médium  
  Région Expédition Conférence  
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  Numéro d'Appel MARBEC @ alain.herve @ collection 2262  
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Auteur Teixido, N.; Gambi, M.C.; Parravacini, V.; Kroeker, K.; Micheli, F.; Villeger, S.; Ballesteros, E. doi  openurl
  Titre Functional biodiversity loss along natural CO2 gradients Type Article scientifique
  Année 2018 Publication Revue Abrégée Nat. Commun.  
  Volume 9 Numéro Pages (down) 5149  
  Mots-Clés carbon; community; consequences; diversity; fish; impact; ocean acidification; redundancy; reveals; vulnerability  
  Résumé The effects of environmental change on biodiversity are still poorly understood. In particular, the consequences of shifts in species composition for marine ecosystem function are largely unknown. Here we assess the loss of functional diversity, i.e. the range of species biological traits, in benthic marine communities exposed to ocean acidification (OA) by using natural CO2 vent systems. We found that functional richness is greatly reduced with acidification, and that functional loss is more pronounced than the corresponding decrease in taxonomic diversity. In acidified conditions, most organisms accounted for a few functional entities (i.e. unique combination of functional traits), resulting in low functional redundancy. These results suggest that functional richness is not buffered by functional redundancy under OA, even in highly diverse assemblages, such as rocky benthic communities.  
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  Langue English Langue du Résumé Titre Original  
  Éditeur de collection Titre de collection Titre de collection Abrégé  
  Volume de collection Numéro de collection Edition  
  ISSN 2041-1723 ISBN Médium  
  Région Expédition Conférence  
  Notes Approuvé pas de  
  Numéro d'Appel MARBEC @ isabelle.vidal-ayouba @ collection 2477  
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