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Auteur Escalas, A.; Hale, L.; Voordeckers, J.W.; Yang, Y.; Firestone, M.K.; Alvarez-Cohen, L.; Zhou, J. doi  openurl
  Titre Microbial functional diversity: From concepts to applications Type Article scientifique
  Année 2019 Publication Revue Abrégée Ecol. Evol.  
  Volume 9 Numéro 20 Pages 12000-12016  
  Mots-Clés bacterial communities; biodiversity; biogeography; differentiation; functional diversity; functional traits; genes; microbial communities; niche space; redundancy; soil; taxonomy; theoretical frameworks of diversity; trait-based ecology; traits  
  Résumé Functional diversity is increasingly recognized by microbial ecologists as the essential link between biodiversity patterns and ecosystem functioning, determining the trophic relationships and interactions between microorganisms, their participation in biogeochemical cycles, and their responses to environmental changes. Consequently, its definition and quantification have practical and theoretical implications. In this opinion paper, we present a synthesis on the concept of microbial functional diversity from its definition to its application. Initially, we revisit to the original definition of functional diversity, highlighting two fundamental aspects, the ecological unit under study and the functional traits used to characterize it. Then, we discuss how the particularities of the microbial world disallow the direct application of the concepts and tools developed for macroorganisms. Next, we provide a synthesis of the literature on the types of ecological units and functional traits available in microbial functional ecology. We also provide a list of more than 400 traits covering a wide array of environmentally relevant functions. Lastly, we provide examples of the use of functional diversity in microbial systems based on the different units and traits discussed herein. It is our hope that this paper will stimulate discussions and help the growing field of microbial functional ecology to realize a potential that thus far has only been attained in macrobial ecology.  
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  Langue English Langue du Résumé Titre Original  
  Éditeur de collection Titre de collection Titre de collection Abrégé  
  Volume de collection Numéro de collection Edition  
  ISSN 2045-7758 ISBN Médium  
  Région (down) Expédition Conférence  
  Notes WOS:000488395500001 Approuvé pas de  
  Numéro d'Appel MARBEC @ isabelle.vidal-ayouba @ collection 2649  
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Auteur Maire, Eva; Cinner, J.; Velez, L.; Huchery, C.; Mora, C.; D'agata, S.; Vigliola, L.; Wantiez, L.; Kulbicki, M.; Mouillot, D. doi  openurl
  Titre How accessible are coral reefs to people? A global assessment based on travel time Type Article scientifique
  Année 2016 Publication Revue Abrégée Ecol. Lett.  
  Volume 19 Numéro 4 Pages 351-360  
  Mots-Clés Accessibility; biodiversity; coral reefs; ecological-systems; fish assemblages; fisheries; marine protected areas; market access; population-density; predictors; social<bold>-</bold>ecological; species richness; travel time; vulnerability  
  Résumé The depletion of natural resources has become a major issue in many parts of the world, with the most accessible resources being most at risk. In the terrestrial realm, resource depletion has classically been related to accessibility through road networks. In contrast, in the marine realm, the impact on living resources is often framed into the Malthusian theory of human density around ecosystems. Here, we develop a new framework to estimate the accessibility of global coral reefs using potential travel time from the nearest human settlement or market. We show that 58% of coral reefs are located <30min from the nearest human settlement. We use a case study from New Caledonia to demonstrate that travel time from the market is a strong predictor of fish biomass on coral reefs. We also highlight a relative deficit of protection on coral reef areas near people, with disproportional protection on reefs far from people. This suggests that conservation efforts are targeting low-conflict reefs or places that may already be receiving de facto protection due to their isolation. Our global assessment of accessibility in the marine realm is a critical step to better understand the interplay between humans and resources.  
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  Langue English Langue du Résumé Titre Original  
  Éditeur de collection Titre de collection Titre de collection Abrégé  
  Volume de collection Numéro de collection Edition  
  ISSN 1461-023x ISBN Médium  
  Région (down) Expédition Conférence  
  Notes Approuvé pas de  
  Numéro d'Appel MARBEC @ alain.herve @ collection 1626  
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Auteur Gaboriau, T.; Albouy, C.; Descombes, P.; Mouillot, D.; Pellissier, L.; Leprieur, F. doi  openurl
  Titre Ecological constraints coupled with deep-time habitat dynamics predict the latitudinal diversity gradient in reef fishes Type Article scientifique
  Année 2019 Publication Revue Abrégée Proc. R. Soc. B-Biol. Sci.  
  Volume 286 Numéro 1911 Pages 20191506  
  Mots-Clés biodiversity; climate; diversification; environmental-changes; global patterns; latitudinal diversity gradient; mechanistic model; niche conservatism; palaeohabitat; plate-tectonics; rates; reef fish; relative roles; species richness  
  Résumé We develop a spatially explicit model of diversification based on palaeohabitat to explore the predictions of four major hypotheses potentially explaining the latitudinal diversity gradient (LDG), namely, the 'time-area', 'tropical niche conservatism', 'ecological limits' and 'evolutionary speed' livpotheses. We compare simulation outputs to observed diversity gradients in the global reef fish fauna. Our simulations show that these hypotheses are nonmutually exclusive and that their relative influence depends on the time scale considered. Simulations suggest that reef habitat dynamics produced the LDG during deep geological time, while ecological constraints shaped the modern LDG, with a strong influence of the reduction in the latitudinal extent of tropical reefs during the Neogene. Overall, this study illustrates how mechanistic models in ecology and evolution can provide a temporal and spatial understanding of the role of speciation, extinction and dispersal in generating biodiversity patterns.  
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  Langue English Langue du Résumé Titre Original  
  Éditeur de collection Titre de collection Titre de collection Abrégé  
  Volume de collection Numéro de collection Edition  
  ISSN 0962-8452 ISBN Médium  
  Région (down) Expédition Conférence  
  Notes WOS:000486417800008 Approuvé pas de  
  Numéro d'Appel MARBEC @ isabelle.vidal-ayouba @ collection 2650  
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Auteur McLean, M.; Auber, A.; Graham, N.A.J.; Houk, P.; Villeger, S.; Violle, C.; Thuiller, W.; Wilson, S.K.; Mouillot, D. doi  openurl
  Titre Trait structure and redundancy determine sensitivity to disturbance in marine fish communities Type Article scientifique
  Année 2019 Publication Revue Abrégée Glob. Change Biol.  
  Volume 25 Numéro 10 Pages 3424-3437  
  Mots-Clés biodiversity; climate change; climate-change; coral reefs; coral-reef fish; diversity stability; ecological traits; ecosystem functioning; ecosystem productivity; egg buoyancy; English Channel; functional diversity; functional redundancy; north-sea; regime shifts; response diversity; vulnerability  
  Résumé Trait diversity is believed to influence ecosystem dynamics through links between organismal traits and ecosystem processes. Theory predicts that key traits and high trait redundancy-large species richness and abundance supporting the same traits-can buffer communities against environmental disturbances. While experiments and data from simple ecological systems lend support, large-scale evidence from diverse, natural systems under major disturbance is lacking. Here, using long-term data from both temperate (English Channel) and tropical (Seychelles Islands) fishes, we show that sensitivity to disturbance depends on communities' initial trait structure and initial trait redundancy. In both ecosystems, we found that increasing dominance by climatically vulnerable traits (e.g., small, fast-growing pelagics/corallivores) rendered fish communities more sensitive to environmental change, while communities with higher trait redundancy were more resistant. To our knowledge, this is the first study demonstrating the influence of trait structure and redundancy on community sensitivity over large temporal and spatial scales in natural systems. Our results exemplify a consistent link between biological structure and community sensitivity that may be transferable across ecosystems and taxa and could help anticipate future disturbance impacts on biodiversity and ecosystem functioning.  
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  Langue English Langue du Résumé Titre Original  
  Éditeur de collection Titre de collection Titre de collection Abrégé  
  Volume de collection Numéro de collection Edition  
  ISSN 1354-1013 ISBN Médium  
  Région (down) Expédition Conférence  
  Notes WOS:000486150200018 Approuvé pas de  
  Numéro d'Appel MARBEC @ isabelle.vidal-ayouba @ collection 2652  
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Auteur McLean, M.; Mouillot, D.; Villeger, S.; Graham, N.A.J.; Auber, A. doi  openurl
  Titre Interspecific differences in environmental response blur trait dynamics in classic statistical analyses Type Article scientifique
  Année 2019 Publication Revue Abrégée Mar. Biol.  
  Volume 166 Numéro 12 Pages 152  
  Mots-Clés climate-change; community composition; ecology; framework; functional diversity; impact; rules  
  Résumé Trait-based ecology strives to better understand how species, through their bio-ecological traits, respond to environmental changes, and influence ecosystem functioning. Identifying which traits are most responsive to environmental changes can provide insight for understanding community structuring and developing sustainable management practices. However, misinterpretations are possible, because standard statistical methods (e.g., principal component analysis and linear regression) for identifying and ranking the responses of different traits to environmental changes ignore interspecific differences. Here, using both artificial data and real-world examples from marine fish communities, we show how considering species-specific responses can lead to drastically different results than standard community-level methods. By demonstrating the potential impacts of interspecific differences on trait dynamics, we illuminate a major, yet rarely discussed issue, highlighting how analytical misinterpretations can confound our basic understanding of trait responses, which could have important consequences for biodiversity conservation.  
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  Langue English Langue du Résumé Titre Original  
  Éditeur de collection Titre de collection Titre de collection Abrégé  
  Volume de collection Numéro de collection Edition  
  ISSN 0025-3162 ISBN Médium  
  Région (down) Expédition Conférence  
  Notes WOS:000496131000001 Approuvé pas de  
  Numéro d'Appel MARBEC @ isabelle.vidal-ayouba @ collection 2660  
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