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Auteur Magris, R.A.; Andrello, M.; Pressey, R.L.; Mouillot, D.; Dalongeville, A.; Jacobi, M.N.; Manel, S. doi  openurl
  Titre Biologically representative and well-connected marine reserves enhance biodiversity persistence in conservation planning Type Article scientifique
  Année 2018 Publication Revue Abrégée Conserv. Lett.  
  Volume 11 Numéro 4 Pages Unsp-e12439  
  Mots-Clés biodiversity conservation; climate-change; coral-reefs; design; larval dispersal; marine protected areas; marine reserve design; networks; population connectivity; protected areas; spatial planning; spatial prioritization  
  Résumé Current methods in conservation planning for promoting the persistence of biodiversity typically focus on either representing species geographic distributions or maintaining connectivity between reserves, but rarely both, and take a focal species, rather than a multispecies, approach. Here, we link prioritization methods with population models to explore the impact of integrating both representation and connectivity into conservation planning for species persistence. Using data on 288 Mediterranean fish species with varying conservation requirements, we show that: (1) considering both representation and connectivity objectives provides the best strategy for enhanced biodiversity persistence and (2) connectivity objectives were fundamental to enhancing persistence of small-ranged species, which are most in need of conservation, while the representation objective benefited only wide-ranging species. Our approach provides a more comprehensive appraisal of planning applications than approaches focusing on either representation or connectivity, and will hopefully contribute to build more effective reserve networks for the persistence of biodiversity.  
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  Volume de collection Numéro de collection Edition  
  ISSN 1755-263x ISBN Médium  
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  Numéro d'Appel MARBEC @ alain.herve @ collection 2423  
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Auteur Kaplan, D.M.; Cuif, M.; Fauvelot, C.; Vigliola, L.; Nguyen-Huu, T.; Tiavouane, J.; Lett, C. doi  openurl
  Titre Uncertainty in empirical estimates of marine larval connectivity Type Article scientifique
  Année 2017 Publication Revue Abrégée ICES J. Mar. Sci.  
  Volume 74 Numéro 6 Pages 1723-1734  
  Mots-Clés connectivity; dispersal; Larval dispersal; management; model; parentage analysis; persistence; population; protected areas; Reef fish; reserves; self-recruitment; Transgenerational marking  
  Résumé Despite major advances in our capacity to measure marine larval connectivity (i.e. the pattern of transport of marine larvae from spawning to settlement sites) and the importance of these measurements for ecological and management questions, uncertainty in experimental estimates of marine larval connectivity has been given little attention. We review potential uncertainty sources in empirical larval connectivity studies and develop Bayesian statistical methods for estimating these uncertainties based on standard techniques in the mark-recapture and genetics literature. These methods are implemented in an existing R package for working with connectivity data, ConnMatTools, and applied to a number of published connectivity estimates. We find that the small sample size of collected settlers at destination sites is a dominant source of uncertainty in connectivity estimates in many published results. For example, widths of 95% CIs for relative connectivity, the value of which is necessarily between 0 and 1, exceeded 0.5 for many published connectivity results, complicating using individual results to conclude that marine populations are relatively closed or open. This “small sample size” uncertainty is significant even for studies with near-exhaustive sampling of spawners and settlers. Though largely ignored in the literature, the magnitude of this uncertainty is straightforward to assess. Better accountability of this and other uncertainties is needed in the future so that marine larval connectivity studies can fulfill their promises of providing important ecological insights and informing management questions (e.g. related to marine protected area network design, and stock structure of exploited organisms). In addition to using the statistical methods developed here, future studies should consistently evaluate and report a small number of critical factors, such as the exhaustivity of spawner and settler sampling, and the mating structure of target species in genetic studies.  
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  ISSN 1054-3139 ISBN Médium  
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  Numéro d'Appel MARBEC @ alain.herve @ collection 2170  
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Auteur Briscoe, D.K.; Hobday, A.J.; Carlisle, A.; Scales, K.; Eveson, J.P.; Arrizabalaga, H.; Druon, J.N.; Fromentin, J.-M. doi  openurl
  Titre Ecological bridges and barriers in pelagic ecosystems Type Article scientifique
  Année 2017 Publication Revue Abrégée Deep-Sea Res. Part II-Top. Stud. Oceanogr.  
  Volume 140 Numéro Pages 182-192  
  Mots-Clés arctic marine mammals; atlantic bluefin tuna; Billfish; Brazilian episode; climate-change; el-nino; interannual variation; Marine mammal; marlin makaira-nigricans; Migration corridors; Oceanographic features; population connectivity; satellite archival tags; sea-turtles; site fidelity; species distribution; thunnus-maccoyii; Tuna  
  Résumé Many highly mobile species are known to use persistent pathways or corridors to move between habitat patches in which conditions are favorable for particular activities, such as breeding or foraging. In the marine realm, environmental variability can lead to the development of temporary periods of anomalous oceanographic conditions that can connect individuals to areas of habitat outside a population's usual range, or alternatively, restrict individuals from areas usually within their range, thus acting as ecological bridges or ecological barriers. These temporary features can result in novel or irregular trophic interactions and changes in population spatial dynamics, and, therefore, may have significant implications for management of marine ecosystems. Here, we provide evidence of ecological bridges and barriers in different ocean regions, drawing upon five case studies in which particular oceanographic conditions have facilitated or restricted the movements of individuals from highly migratory species. We discuss the potential population-level significance of ecological bridges and barriers, with respect to the life history characteristics of different species, and inter- and intra-population variability in habitat use. Finally, we summarize the persistence of bridge dynamics with time, our ability to monitor bridges and barriers in a changing climate, and implications for forecasting future climate mediated ecosystem change.  
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  ISSN 0967-0645 ISBN Médium  
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  Numéro d'Appel MARBEC @ alain.herve @ collection 2178  
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Auteur Pecoraro, C.; Babbucci, M.; Franch, R.; Rico, C.; Papetti, C.; Chassot, E.; Bodin, N.; Cariani, A.; Bargelloni, L.; Tinti, F. doi  openurl
  Titre The population genomics of yellowfin tuna (Thunnus albacares) at global geographic scale challenges current stock delineation Type Article scientifique
  Année 2018 Publication Revue Abrégée Sci Rep  
  Volume 8 Numéro Pages 13890  
  Mots-Clés archival tag data; atlantic bluefin tuna; connectivity; conservation; divergence; fisheries management; habitat utilization; loci; pacific-ocean; relatedness  
  Résumé Yellowfin tuna, Thunnus albacares, is one of the most important seafood commodities in the world. Despite its great biological and economic importance, conflicting evidence arises from classical genetic and tagging studies concerning the yellowfin tuna population structure at local and global oceanic scales. Access to more powerful and cost effective genetic tools would represent the first step towards resolving the population structure of yellowfin tuna across its distribution range. Using a panel of 939 neutral Single Nucleotide Polymorphisms (SNPs), and the most comprehensive data set of yellowfin samples available so far, we found genetic differentiation among the Atlantic, Indian and Pacific oceans. The genetic stock structure analysis carried out with 33 outlier SNPs, putatively under selection, identified discrete populations within the Pacific Ocean and, for the first time, also within the Atlantic Ocean. Stock assessment approaches that consider genetic differences at neutral and adaptive genomic loci should be routinely implemented to check the status of the yellowfin tuna, prevent illegal trade, and develop more sustainable management measures.  
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  ISSN 2045-2322 ISBN Médium  
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  Numéro d'Appel MARBEC @ alain.herve @ collection 2437  
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Auteur GAGNAIRE, P.-A.; BROQUET, T.; AURELLE, D.; VIARD, F.; SOUISSI, A.; BONHOMME, F.; ARNAUD-HAOND, S.; Bierne, N. url  doi
openurl 
  Titre Using neutral, selected, and hitchhiker loci to assess connectivity of marine populations in the genomic era Type Article scientifique
  Année 2015 Publication Revue Abrégée Evolutionary Applications  
  Volume 8 Numéro 8 Pages 769-786  
  Mots-Clés connectivity; gene flow; marine conservation; population genomics; Population structure  
  Résumé Estimating the rate of exchange of individuals among populations is a central concern to evolutionary ecology and its applications to conservation and management. For instance, the efficiency of protected areas in sustaining locally endangered populations and ecosystems depends on reserve network connectivity. The population genetics theory offers a powerful framework for estimating dispersal distances and migration rates from molecular data. In the marine realm, however, decades of molecular studies have met limited success in inferring genetic connectivity, due to the frequent lack of spatial genetic structure in species exhibiting high fecundity and dispersal capabilities. This is especially true within biogeographic regions bounded by well-known hotspots of genetic differentiation. Here, we provide an overview of the current methods for estimating genetic connectivity using molecular markers and propose several directions for improving existing approaches using large population genomic datasets. We highlight several issues that limit the effectiveness of methods based on neutral markers when there is virtually no genetic differentiation among samples. We then focus on alternative methods based on markers influenced by selection. Although some of these methodologies are still underexplored, our aim was to stimulate new research to test how broadly they are applicable to nonmodel marine species. We argue that the increased ability to apply the concepts of cline analyses will improve dispersal inferences across physical and ecological barriers that reduce connectivity locally. We finally present how neutral markers hitchhiking with selected loci can also provide information about connectivity patterns within apparently well-mixed biogeographic regions. We contend that one of the most promising applications of population genomics is the use of outlier loci to delineate relevant conservation units and related eco-geographic features across which connectivity can be measured.  
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  ISSN 1752-4571 ISBN Médium  
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  Numéro d'Appel MARBEC @ isabelle.vidal-ayouba @ collection 1434  
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