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Auteur Evans, S.M.; McKenna, C.; Simpson, S.D.; Tournois, J.; Genner, M.J.
Titre Patterns of species range evolution in Indo-Pacific reef assemblages reveal the Coral Triangle as a net source of transoceanic diversity Type Article scientifique
Année 2016 Publication Revue Abrégée Biol. Lett.
Volume 12 Numéro 6 Pages (down) 20160090
Mots-Clés Bayesian skyline plot; biogeography; climate change; coral reef; fishes global patterns; marine biodiversity; ocean; phylogeography; refugia; species distributions
Résumé The Coral Triangle in the Indo-Pacific is a region renowned for exceptional marine biodiversity. The area could have acted as a 'centre of origin' where speciation has been prolific or a 'centre of survival' by providing refuge during major environmental shifts such as sea-level changes. The region could also have acted as a 'centre of accumulation' for species with origins outside of the Coral Triangle, owing to it being at a central position between the Indian and Pacific oceans. Here, we investigated support for these hypotheses using population-level DNA sequence-based reconstructions of the range evolution of 45 species (314 populations) of Indo-Pacific reef-associated organisms. Our results show that populations undergoing the most ancient establishment were significantly more likely to be closer to the centre of the Coral Triangle than to peripheral locations. The data are consistent with the Coral Triangle being a net source of coral-reef biodiversity for the Indo-Pacific region, suggesting that the region has acted primarily as a centre of survival, a centre of origin or both. These results provide evidence of how a key location can influence the large-scale distributions of biodiversity over evolutionary timescales.
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Auteur institutionnel Thèse
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Langue English Langue du Résumé Titre Original
Éditeur de collection Titre de collection Titre de collection Abrégé
Volume de collection Numéro de collection Edition
ISSN 1744-9561 ISBN Médium
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Numéro d'Appel MARBEC @ alain.herve @ collection 1694
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Auteur Escalas, A.; Hale, L.; Voordeckers, J.W.; Yang, Y.; Firestone, M.K.; Alvarez-Cohen, L.; Zhou, J.
Titre Microbial functional diversity: From concepts to applications Type Article scientifique
Année 2019 Publication Revue Abrégée Ecol. Evol.
Volume 9 Numéro 20 Pages (down) 12000-12016
Mots-Clés bacterial communities; biodiversity; biogeography; differentiation; functional diversity; functional traits; genes; microbial communities; niche space; redundancy; soil; taxonomy; theoretical frameworks of diversity; trait-based ecology; traits
Résumé Functional diversity is increasingly recognized by microbial ecologists as the essential link between biodiversity patterns and ecosystem functioning, determining the trophic relationships and interactions between microorganisms, their participation in biogeochemical cycles, and their responses to environmental changes. Consequently, its definition and quantification have practical and theoretical implications. In this opinion paper, we present a synthesis on the concept of microbial functional diversity from its definition to its application. Initially, we revisit to the original definition of functional diversity, highlighting two fundamental aspects, the ecological unit under study and the functional traits used to characterize it. Then, we discuss how the particularities of the microbial world disallow the direct application of the concepts and tools developed for macroorganisms. Next, we provide a synthesis of the literature on the types of ecological units and functional traits available in microbial functional ecology. We also provide a list of more than 400 traits covering a wide array of environmentally relevant functions. Lastly, we provide examples of the use of functional diversity in microbial systems based on the different units and traits discussed herein. It is our hope that this paper will stimulate discussions and help the growing field of microbial functional ecology to realize a potential that thus far has only been attained in macrobial ecology.
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Langue English Langue du Résumé Titre Original
Éditeur de collection Titre de collection Titre de collection Abrégé
Volume de collection Numéro de collection Edition
ISSN 2045-7758 ISBN Médium
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Notes WOS:000488395500001 Approuvé pas de
Numéro d'Appel MARBEC @ isabelle.vidal-ayouba @ collection 2649
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Auteur Oberdorff, T.; Dias, M.S.; Jezequel, C.; Albert, J.S.; Arantes, C.C.; Bigorne, R.; Carvajal-Valleros, F.M.; De Wever, A.; Frederico, R.G.; Hidalgo, M.; Hugueny, B.; Leprieur, F.; Maldonado, M.; Maldonado-Ocampo, J.; Martens, K.; Ortega, H.; Sarmiento, J.; Tedesco, P.A.; Torrente-Vilara, G.; Winemiller, K.O.; Zuanon, J.
Titre Unexpected fish diversity gradients in the Amazon basin Type Article scientifique
Année 2019 Publication Revue Abrégée Sci. Adv.
Volume 5 Numéro 9 Pages (down) eaav8681
Mots-Clés biodiversity; biogeography; climate-change; communities; convergence; diversification; fragmentation; patterns; river; speciation
Résumé Using the most comprehensive fish occurrence database, we evaluated the importance of ecological and historical drivers in diversity patterns of subdrainage basins across the Amazon system. Linear models reveal the influence of climatic conditions, habitat size and sub-basin isolation on species diversity. Unexpectedly, the species richness model also highlighted a negative upriver-downriver gradient, contrary to predictions of increasing richness at more downriver locations along fluvial gradients. This reverse gradient may be linked to the history of the Amazon drainage network, which, after isolation as western and eastern basins throughout the Miocene, only began flowing eastward 1-9 million years (Ma) ago. Our results suggest that the main center of fish diversity was located westward, with fish dispersal progressing eastward after the basins were united and the Amazon River assumed its modern course toward the Atlantic. This dispersal process seems not yet achieved, suggesting a recent formation of the current Amazon system.
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Editeur Lieu de Publication Éditeur
Langue English Langue du Résumé Titre Original
Éditeur de collection Titre de collection Titre de collection Abrégé
Volume de collection Numéro de collection Edition
ISSN 2375-2548 ISBN Médium
Région Expédition Conférence
Notes WOS:000491128800037 Approuvé pas de
Numéro d'Appel MARBEC @ isabelle.vidal-ayouba @ collection 2681
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Auteur Saeedi, H.; Reimer, J.D.; Brandt, M.; Dumais, P.-O.; Jazdzewska, A.M.; Jeffery, N.W.; Thielen, P.M.; Costello, M.J.
Titre Global marine biodiversity in the context of achieving the Aichi Targets: ways forward and addressing data gaps Type Article scientifique
Année 2019 Publication Revue Abrégée PeerJ
Volume 7 Numéro Pages (down) e7221
Mots-Clés Aichi targets; assemblages; benefits; Biodiversity tools and pipelines; Biogeography; conservation; coral-reefs; Data standard; Data standards; deep-sea; Discovery; Dissemination; diversity gradient; life; Marine biodiversity; patterns; Prediction; progress; species richness; Stewardship; Stewardship and dissemination; Tools and pipelines
Résumé In 2010, the Conference of the Parties of the Convention on Biological Diversity agreed on the Strategic Plan for Biodiversity 2011-2020 in Aichi Prefecture, Japan. As this plan approaches its end, we discussed whether marine biodiversity and prediction studies were nearing the Aichi Targets during the 4th World Conference on Marine Biodiversity held in Montreal, Canada in June 2018. This article summarises the outcome of a five-day group discussion on how global marine biodiversity studies should be focused further to better understand the patterns of biodiversity. We discussed and reviewed seven fundamental biodiversity priorities related to nine Aichi Targets focusing on global biodiversity discovery and predictions to improve and enhance biodiversity data standards (quantity and quality), tools and techniques, spatial and temporal scale framing, and stewardship and dissemination. We discuss how identifying biodiversity knowledge gaps and promoting efforts have and will reduce such gaps, including via the use of new databases, tools and technology, and how these resources could be improved in the future. The group recognised significant progress toward Target 19 in relation to scientific knowledge, but negligible progress with regard to Targets 6 to 13 which aimed to safeguard and reduce human impacts on biodiversity.
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Editeur Lieu de Publication Éditeur
Langue English Langue du Résumé Titre Original
Éditeur de collection Titre de collection Titre de collection Abrégé
Volume de collection Numéro de collection Edition
ISSN 2167-8359 ISBN Médium
Région Expédition Conférence
Notes WOS:000493041100001 Approuvé pas de
Numéro d'Appel MARBEC @ isabelle.vidal-ayouba @ collection 2682
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Auteur Mazel, F.; Renaud, J.; Guilhaumon, F.; Mouillot, D.; Gravel, D.; Thuiller, W.
Titre Mammalian phylogenetic diversity-area relationships at a continental scale Type Article scientifique
Année 2015 Publication Revue Abrégée Ecology
Volume 96 Numéro 10 Pages (down) 2814-2822
Mots-Clés Biodiversity; Biogeography; community ecology; conservation; conservation biogeography; habitat loss; habitat loss; null models; overestimate extinction rates; patterns; phylogenetic diversity; richness; species-area; species-area relationship; statistics; strict nested design
Résumé In analogy to the species-area relationship (SAR), one of the few laws in ecology, the phylogenetic diversity-area relationship (PDAR) describes the tendency of phylogenetic diversity (PD) to increase with area. Although investigating PDAR has the potential to unravel the underlying processes shaping assemblages across spatial scales and to predict PD loss through habitat reduction, it has been little investigated so far. Focusing on PD has noticeable advantages compared to species richness (SR), since PD also gives insights on processes such as speciation/extinction, assembly rules and ecosystem functioning. Here we investigate the universality and pervasiveness of the PDAR at continental scale using terrestrial mammals as study case. We define the relative robustness of PD (compared to SR) to habitat loss as the area between the standardized PDAR and standardized SAR (i.e., standardized by the diversity of the largest spatial window) divided by the area under the standardized SAR only. This metric quantifies the relative increase of PD robustness compared to SR robustness. We show that PD robustness is higher than SR robustness but that it varies among continents. We further use a null model approach to disentangle the relative effect of phylogenetic tree shape and nonrandom spatial distribution of evolutionary history on the PDAR. We find that, for most spatial scales and for all continents except Eurasia, PDARs are not different from expected by a model using only the observed SAR and the shape of the phylogenetic tree at continental scale. Interestingly, we detect a strong phylogenetic structure of the Eurasian PDAR that can be predicted by a model that specifically account for a finer biogeographical delineation of this continent. In conclusion, the relative robustness of PD to habitat loss compared to species richness is determined by the phylogenetic tree shape but also depends on the spatial structure of PD.
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Editeur Lieu de Publication Éditeur
Langue English Langue du Résumé Titre Original
Éditeur de collection Titre de collection Titre de collection Abrégé
Volume de collection Numéro de collection Edition
ISSN 0012-9658 ISBN Médium
Région Expédition Conférence
Notes Approuvé pas de
Numéro d'Appel MARBEC @ isabelle.vidal-ayouba @ collection 1423
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