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Auteur Gounand, I.; Daufresne, T.; Gravel, D.; Bouvier, C.; Bouvier, T.; Combe, M.; Gougat-Barbera, C.; Poly, F.; Torres-Barcelo, C.; Mouquet, N.
Titre Size evolution in microorganisms masks trade-offs predicted by the growth rate hypothesis Type Article scientifique
Année 2016 Publication Revue Abrégée Proc. R. Soc. B-Biol. Sci.
Volume 283 Numéro 1845 Pages 20162272
Mots-Clés Bacteria; bacterial community; biological stoichiometry; cell-size; escherichia-coli; experimental evolution; fresh-water; growth rate hypothesis; inorganic polyphosphate; intrinsic growth; mechanistic approach; Pseudomonas fluorescens; resource competition; r/K strategies; Stoichiometry; variable environment
Résumé Adaptation to local resource availability depends on responses in growth rate and nutrient acquisition. The growth rate hypothesis (GRH) suggests that growing fast should impair competitive abilities for phosphorus and nitrogen due to high demand for biosynthesis. However, in microorganisms, size influences both growth and uptake rates, which may mask trade-offs and instead generate a positive relationship between these traits (size hypothesis, SH). Here, we evolved a gradient of maximum growth rate (mu(max)) from a single bacterium ancestor to test the relationship among mu(max), competitive ability for nutrients and cell size, while controlling for evolutionary history. We found a strong positive correlation between mu(max) and competitive ability for phosphorus, associated with a trade-off between mu(max) and cell size: strains selected for high mu(max) were smaller and better competitors for phosphorus. Our results strongly support the SH, while the trade-offs expected under GRH were not apparent. Beyond plasticity, unicellular populations can respond rapidly to selection pressure through joint evolution of their size and maximum growth rate. Our study stresses that physiological links between these traits tightly shape the evolution of competitive strategies.
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Langue English Langue du Résumé Titre Original
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Volume de collection Numéro de collection Edition
ISSN 0962-8452 ISBN Médium
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Numéro d'Appel (up) MARBEC @ alain.herve @ collection 2055
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Auteur Brouwer, G.M.; Duijnstee, I. a. P.; Hazeleger, J.H.; Rossi, F.; Lourens, L.J.; Middelburg, J.J.; Wolthers, M.
Titre Diet shifts and population dynamics of estuarine foraminifera during ecosystem recovery after experimentally induced hypoxia crises Type Article scientifique
Année 2016 Publication Revue Abrégée Estuar. Coast. Shelf Sci.
Volume 170 Numéro Pages 20-33
Mots-Clés Bacteria; Benthic foraminifera; C-13 label; communities; Diet shifts; differential response; diversity; Hypoxia; in-situ; Intertidal; Macrofauna; Meiofauna; microphytobenthos carbon; population dynamics; Sediment
Résumé This study shows foraminiferal dynamics after experimentally induced hypoxia within the wider context of ecosystem recovery. C-13-labeled bicarbonate and glucose were added to the sediments to examine foraminiferal diet shifts during ecosystem recovery and test-size measurements were used to deduce population dynamics. Hypoxia-treated and undisturbed patches were compared to distinguish natural (seasonal) fluctuations from hypoxia-induced responses. The effect of timing of disturbance and duration of recovery were investigated. The foraminiferal diets and population dynamics showed higher fluctuations in the recovering patches compared to the controls. The foraminiferal diet and population structure of Haynesina germanica and Ammonia beccarii responded differentially and generally inversely to progressive stages of ecosystem recovery. Tracer inferred diet estimates in April and June and the two distinctly visible cohorts in the test-size distribution, discussed to reflect reproduction in June, strongly suggest that the ample availability of diatoms during the first month of ecosystem recovery after the winter hypoxia was likely profitable to A. beccarii. Enhanced reproduction itself was strongly linked to the subsequent dietary shift to bacteria. The distribution of the test dimensions of H. germanica indicated that this species had less fluctuation in population structure during ecosystem recovery but possibly reproduced in response to the induced winter hypoxia. Bacteria seemed to consistently contribute more to the diet of H. germanica than diatoms. For the diet and test-size distribution of both species, the timing of disturbance seemed to have a higher impact than the duration of the subsequent recovery period. (C) 2016 Published by Elsevier Ltd.
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Langue English Langue du Résumé Titre Original
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Volume de collection Numéro de collection Edition
ISSN 0272-7714 ISBN Médium
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Numéro d'Appel (up) MARBEC @ alain.herve @ collection 2065
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Auteur Bettarel, Y.; Halary, S.; Auguet, J.-C.; Mai, T.C.; Bui, N.V.; Bouvier, T.; Got, P.; Bouvier, C.; Monteil-Bouchard, S.; Christelle, D.
Titre Corallivory and the microbial debacle in two branching scleractinians Type Article scientifique
Année 2018 Publication Revue Abrégée Isme J.
Volume 12 Numéro 4 Pages 1109-1126
Mots-Clés brown band disease; coral-associated bacteria; diversity; drupella-cornus; great-barrier-reef; network analysis; red-sea; search tool; viral communities; viruses
Résumé The grazing activity by specific marine organisms represents a growing threat to the survival of many scleractinian species. For example, the recent proliferation of the corallivorous gastropod Drupella now constitutes a critical case in all South-East Asian waters. If the damaging effects caused by this marine snail on coral polyps are relatively well known, the indirect incidence of predation on coral microbial associates is still obscure and might also potentially impair coral health. In this study, we compared the main ecological traits of coral-associated bacterial and viral communities living in the mucus layer of Acropora formosa and Acropora millepora, of healthy and predated individuals (i.e., colonized by Drupella rugosa), in the Bay of Van Phong (Vietnam). Our results show a substantial impact of the gastropod on a variety of microbiological markers. Colonized corals harbored much more abundant and active epibiotic bacteria whose community composition shifted toward more pathogenic taxa (belonging to the Vibrionales, Clostridiales, Campylobacterales, and Alteromonadales orders), together with their specific phages. Viral epibionts were also greatly influenced by Drupella corallivory with spectacular modifications in their concentrations, life strategies, genotype richness, and diversity. Novel and abundant circular Rep-encoding ssDNA viruses (CRESS-DNA viruses) were detected and characterized in grazed corals and we propose that their occurrence may serve as indicator of the coral health status. Finally, our results reveal that corallivory can cause severe dysbiosis by altering virus-bacteria interactions in the mucus layer, and ultimately favoring the development of local opportunistic infections.
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Volume de collection Numéro de collection Edition
ISSN 1751-7362 ISBN Médium
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Numéro d'Appel (up) MARBEC @ alain.herve @ collection 2325
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Auteur Duval, C.; Thomazeau, S.; Drelin, Y.; Yepremian, C.; Bouvy, M.; Couloux, A.; Troussellier, M.; Rousseau, F.; Bernard, C.
Titre Phylogeny and salt-tolerance of freshwater Nostocales strains: Contribution to their systematics and evolution Type Article scientifique
Année 2018 Publication Revue Abrégée Harmful Algae
Volume 73 Numéro Pages 58-71
Mots-Clés baltic sea; bloom; comb. nova; Cyanobacteria; dolichospermum; genera anabaena; genetics analysis; great oxidation event; hetR; Morphology; nijH; Nostocaceae; Phylogeny; Physiology; planktonic cyanobacteria; polyphasic approach; Polyphasic approach; Salt-tolerance; toxin production
Résumé Phylogenetic relationships among heterocytous genera (the Nostocales order) have been profoundly modified since the use of polyphasic approaches that include molecular data. There is nonetheless still ample scope for improving phylogenetic delineations of genera with broad ecological distributions, particularly by integrating specimens from specific or up-to-now poorly sampled habitats. In this context, we studied 36 new isolates belonging to Chrysosporum, Dolichospermum, Anabaena, Anabaenopsis, and Cylindrospermopsis from freshwater ecosystems of Burkina-Faso, Senegal, and Mayotte Island. Studying strains from these habitats is of particular interest as we suspected different range of salt variations during underwent periods of drought in small ponds and lakes. Such salt variation may cause different adaptation to salinity. We then undertook a polyphasic approach, combining molecular phylogenies, morphological analyses, and physiological measurements of tolerance to salinity. Molecular phylogenies of 117 Nostocales sequences showed that the 36 studied strains were distributed in seven lineages: Dolichospermum, Chrysosporum, Cylindrospermopsis Raphidiopsis, Anabaenopsis, Anabaena sphaerica var tenuis/Sphaerospermopsis, and two independent Anabaena sphaerica lineages. Physiological data were congruent with molecular results supporting the separation into seven lineages. In an evolutionary context, salinity tolerance can be used as an integrative marker to reinforce the delineation of some cyanobacterial lineages. The history of this physiological trait contributes to a better understanding of processes leading to the divergence of cyanobacteria. In this study, most of the cyanobacterial strains isolated from freshwater environments were salt-tolerant, thus suggesting this trait constituted an ancestral trait of the heterocytous cyanobacteria and that it was probably lost two times secondarily and independently in the ancestor of Dolichospermum and of Cylindrospermopsis. (C) 2018 Elsevier B.V. All rights reserved.
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Langue English Langue du Résumé Titre Original
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Volume de collection Numéro de collection Edition
ISSN 1568-9883 ISBN Médium
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Numéro d'Appel (up) MARBEC @ alain.herve @ collection 2341
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Auteur Blanchet, M.; Pringault, O.; Panagiotopoulos, C.; Lefevre, D.; Charriere, B.; Ghiglione, J.-F.; Fernandez, C.; Aparicio, F.L.; Marrase, C.; Catala, P.; Oriol, L.; Caparros, J.; Joux, F.
Titre When riverine dissolved organic matter (DOM) meets labile DOM in coastal waters: changes in bacterial community activity and composition Type Article scientifique
Année 2017 Publication Revue Abrégée Aquat. Sci.
Volume 79 Numéro 1 Pages 27-43
Mots-Clés Bacterial community composition; bacterioplankton; biodegradation; carbon; coastal waters; Dissolved organic matter; Fluorescence; growth efficiency; lake water; marine; Mediterranean Sea; open-ocean; Priming effect; rhone river; terrestrial
Résumé Heterotrophic bacterial communities in marine environments are exposed to a heterogeneous mixture of dissolved organic compounds with different bioreactivity that may control both their activity and composition. The coastal environment is an example of a mixing area where recalcitrant allochthonous organic matter from rivers can encounter labile organic matter from marine phytoplanktonic blooms. The objective of this study was to explore the effects of mixed qualities of dissolved organic matter (DOM) on bacterial community activity (BCA) and bacterial community composition (BCC) and to test for a priming effect when DOM sources are added in combination. Coastal marine bacterial communities were incubated separately with a mixture of amino acids and with natural riverine DOM or with both sources together for 42 days. Addition of amino acids alone or in combination with riverine DOM led to a similar stimulation of BCA compared to control condition, whereas addition of riverine DOM alone did not modify BCA compared to the control. On the contrary, BCC analyzed by 16S rRNA gene pyrosequencing was not affected by the addition of amino acids alone, but changed dramatically with riverine DOM alone or in combination with amino acids. Our results show that changes in BCA and BCC can be driven by different types of DOM, but that these changes are not necessarily coupled. Moreover, the addition of labile DOM did not modify the microbial decomposition of riverine DOM, nor the BCC, suggesting that a priming effect did not occur under these experimental conditions.
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Volume de collection Numéro de collection Edition
ISSN 1015-1621 ISBN Médium
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Numéro d'Appel (up) MARBEC @ alain.herve @ collection 2090
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