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Auteur BLANCHETON, J.-P.; Attramadal, K.J.K.; MICHAUD, L.; ROQUE D'ORBCASTEL, E.; Vadstein, O.
Titre Insight into bacterial population in aquaculture systems and its implication Type Article scientifique
Année 2013 Publication Aquacultural Engineering Revue Abrégée (up)
Volume 53 Numéro Pages 30-39
Mots-Clés Intensive systems; Water recirculation; Bacterial population; Microbial management; Fish health
Résumé The current onshore aquaculture trend is to develop large scale production of diversified fingerlings and very large units for fish ongrowing. This requires an industrial type of approach including quality assurance and minimization of failures in addition to management of bio-technical and economic aspects. Therefore, all the key biological mechanisms involved in Recirculating Aquaculture Systems (RAS) need to be better understood, especially those determining the development of bacterial populations and their interactions with fish. This review presents new knowledge on bacterial community compositions in various parts of RAS and on bacterial-fish interactions in RAS, which constitute essential tools for system management. (C) 2012 Elsevier B.V. All rights reserved.
Adresse Norwegian Univ Sci & Technol NTNU, Dept Biotechnol, Trondheim, Norway.
Auteur institutionnel Thèse
Editeur Elsevier Sci Ltd Lieu de Publication Éditeur
Langue Langue du Résumé Titre Original
Éditeur de collection Titre de collection Titre de collection Abrégé
Volume de collection Numéro de collection Edition
ISSN 0144-8609 ISBN Médium
Région Expédition Conférence
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Numéro d'Appel MARBEC @ isabelle.vidal-ayouba @ 24464 collection 1219
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Auteur Brauer, V.S.; Stomp, M.; Bouvier, T.; Fouilland, E.; Leboulanger, C.; Confurius-Guns, V.; Weissing, F.J.; Stal, L.J.; Huisman, J.
Titre Competition and facilitation between the marine nitrogen-fixing cyanobacteriunn Cyanothece and its associated bacterial community Type Article scientifique
Année 2015 Publication Frontiers in Microbiology Revue Abrégée (up)
Volume 5 Numéro Pages
Mots-Clés aerobic anoxygenic phototrophs; cyanobacteria; heterotrophic bacteria; microbiota; nitrogen fixation; Phytoplankton; resource competition; species interactions
Résumé N-2-fixing cyanobacteria represent a major source of new nitrogen and carbon for marine microbial communities, but little is known about their ecological interactions with associated microbiota. In this study we investigated the interactions between the unicellular N-2-fixing cyanobacterium Cyanothece sp. Miami BG043511 and its associated free-living chemotrophic bacteria at different concentrations of nitrate and dissolved organic carbon and different temperatures. High temperature strongly stimulated the growth of Cyanothece, but had less effect on the growth and community composition of the chemotrophic bacteria. Conversely, nitrate and carbon addition did not significantly increase the abundance of Cyanothece, but strongly affected the abundance and species composition of the associated chemotrophic bacteria. In nitrate-free medium the associated bacterial community was co-dominated by the putative diazotroph Mesorhizobium and the putative aerobic anoxygenic phototroph Erythrobacter and after addition of organic carbon also by the Flavobacterium Muricauda. Addition of nitrate shifted the composition toward co-dominance by Erythrobacter and the Gammaproteobacterium Marinobacter. Our results indicate that Cyanothece modified the species composition of its associated bacteria through a combination of competition and facilitation. Furthermore, within the bacterial community, niche differentiation appeared to play an important role, contributing to the coexistence of a variety of different functional groups. An important implication of these findings is that changes in nitrogen and carbon availability due to, e.g., eutrophication and climate change are likely to have a major impact on the species composition of the bacterial community associated with N-2-fixing cyanobacteria.
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Auteur institutionnel Thèse
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Éditeur de collection Titre de collection Titre de collection Abrégé
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ISSN ISBN Médium
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Numéro d'Appel MARBEC @ isabelle.vidal-ayouba @ collection 1101
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Auteur Joux, F.; Bertrand, J.-C.; De Wit, R.; Grossi, V.; Intertaglia, L.; Lebaron, P.; Michotey, V.; Normand, P.; Peyret, P.; Raimbault, P.; Tamburini, C.; Urios, L.
Titre Methods for Studying Microorganisms in the Environment Type Chapitre de livre
Année 2015 Publication Revue Abrégée (up)
Volume Numéro Pages 757-829
Mots-Clés Bacterial isolation; Biomarkers; Cultural techniques; Cytometry; DNA microarray; Microbial activities; Microbial Ecology; Microelectrodes; Molecular fingerprints; Pcr; Phospholipid fatty acid analyses; Pigment analyses; Sampling techniques
Résumé The main methods for the study of microorganisms in the environment (water, soil, sediment, biofilms), the different techniques of sampling for measuring biomass, the activities, and the diversity of the microorganisms are presented. To respond to these various issues, techniques as varied as those of flow cytometry, molecular biology, biochemistry, molecular isotopic tools, or electrochemistry are implemented. These different techniques are described with their advantages and disadvantages for different types of biotopes. The question of the isolation, culture, and conservation of microorganisms from the environment are also addressed. Without being exhaustive, this chapter emphasizes the importance of using appropriate and efficient methodological tools to properly explore the still mysterious compartment of microorganisms in the environment.
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Editeur Springer Netherlands Lieu de Publication Éditeur Bertrand, J.-C.; Caumette, P.; Lebaron, P.; Matheron, R.; Normand, P.; Sime-Ngando, T.
Langue en Langue du Résumé Titre Original
Éditeur de collection Titre de collection Titre de collection Abrégé Environmental Microbiology: Fundamentals and Applications
Volume de collection Numéro de collection Edition
ISSN ISBN 978-94-017-9117-5 978-94-017-9118-2 Médium
Région Expédition Conférence
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Numéro d'Appel MARBEC @ alain.herve @ collection 1393
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Auteur Galès, A.; Bonnafous, A.; Carré, C.; Jauzein, V.; Lanouguère, E.; Le Floc'h, E.; Pinoit, J.; Poullain, C.; Roques, C.; Sialve, B.; Simier, M.; Steyer, J.-P.; Fouilland, E.
Titre Importance of ecological interactions during wastewater treatment using High Rate Algal Ponds under different temperate climates Type Article scientifique
Année 2019 Publication Revue Abrégée (up) Algal Research
Volume 40 Numéro Pages 101508
Mots-Clés Ammonia and phosphate removal; Bacteria; Microalgae; Predators; Urban effluents
Résumé Several studies focused on wastewater treatment in High Rate Algal Ponds (HRAP) suggest that highly variable climatic conditions cause large variations of microalgal biomass productivity. In the present study, we show that similar carbon, nitrogen and phosphorus removal efficiencies were reached in different HRAPs treating urban wastewaters located in two different temperate (Mediterranean and oceanic) climates. Furthermore, similar ecological successions were observed in these HRAPs. During the start-up phase, the consumption of organic matter by detritivores, already present in the wastewater, appears to be necessary for the microalgae to grow within two weeks in spring. The growth of the rapid-growing species, Chlorella sp., followed by the grazing-resilient species, Scenedesmus sp., combined with nitrifying and denitrifying bacterial activity, removed most the ammonia. The resulting exhaustion of ammonia would limit the complete removal of dissolved COD by bacteria and phosphate by microalgae in the HRAPs. This study shows that similar biological and environmental constraints were applied on the HRAPs, making the process efficiency highly reproducible under different temperate latitudes.
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Editeur Lieu de Publication Éditeur
Langue Langue du Résumé Titre Original
Éditeur de collection Titre de collection Titre de collection Abrégé
Volume de collection Numéro de collection Edition
ISSN 2211-9264 ISBN Médium
Région Expédition Conférence
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Numéro d'Appel MARBEC @ isabelle.vidal-ayouba @ collection 2572
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Auteur Le Chevanton, M.; Garnier, M.; Bougaran, G.; Schreiber, N.; Lukomska, E.; Bérard, J.B.; Fouilland, E.; Bernard, O.; Cadoret, J.P.
Titre Screening and selection of growth-promoting bacteria for Dunaliella cultures Type Article scientifique
Année 2013 Publication Revue Abrégée (up) Algal Research
Volume 2 Numéro Pages 212-222
Mots-Clés Bacterial diversity; Dunaliella; Interaction; bacteria; microalgae
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Editeur Lieu de Publication Éditeur
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Éditeur de collection Titre de collection Titre de collection Abrégé
Volume de collection Numéro de collection Edition
ISSN 2211-9264 ISBN Médium
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Numéro d'Appel MARBEC @ isabelle.vidal-ayouba @ collection 815
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