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Auteur (down) Shannon, L.J.; Coll, M.; Yemane, D.; Jouffre, D.; Neira, S.; Bertrand, A.; Diaz, E.; Shin, Y.J. url  doi
openurl 
  Titre Comparing data-based indicators across upwelling and comparable systems for communicating ecosystem states and trends Type Article scientifique
  Année 2010 Publication Revue Abrégée ICES J. Mar. Sci.  
  Volume 67 Numéro 4 Pages 807-832  
  Mots-Clés adriatic sea; central chile; comparative approach; demersal resources; fishing impacts; food-web; global fisheries; humboldt current system; indicator; nw mediterranean sea; pelagic fish; regime shifts; southern benguela; upwelling  
  Résumé Shannon, L. J., Coll, M., Yemane, D., Jouffre, D., Neira, S., Bertrand, A., Diaz, E., and Shin, Y-J. 2010. Comparing data-based indicators across upwelling and comparable systems for communicating ecosystem states and trends. – ICES Journal of Marine Science, 67: 807-832.  
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  ISSN 1054-3139 ISBN Médium  
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  Numéro d'Appel MARBEC @ isabelle.vidal-ayouba @ collection 482  
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Auteur (down) Saraux, C.; Van Beveren, E.; Brosset, P.; Queiros, Q.; Bourdeix, J.-H.; Dutto, G.; Gasset, E.; Jac, C.; Bonhommeau, S.; Fromentin, J.-M. url  doi
openurl 
  Titre Small pelagic fish dynamics: A review of mechanisms in the Gulf of Lions Type Article scientifique
  Année 2019 Publication Revue Abrégée Deep-Sea Res. Part II-Top. Stud. Oceanogr.  
  Volume 159 Numéro Pages 52-61  
  Mots-Clés Population dynamics; Zooplankton; anchovy; fisheries; history; forage fish; nw mediterranean sea; el-nino; fluctuations; body condition; Bottom-up; Disease; Exploited species; Top-down; sardine sardinops-sagax; southern benguela  
  Résumé Around 2008, an ecosystem shift occurred in the Gulf of Lions, highlighted by considerable changes in biomass and fish mean weight of its two main small pelagic fish stocks (European anchovy, Engraulis encrasicolus; European sardine, Sardina pilchardus). Surprisingly these changes did not appear to be mediated by a decrease in fish recruitment rates (which remained high) or by a high fishing pressure (exploitation rates being extremely low). Here, we review the current knowledge on the population's dynamics and its potential causes. We used an integrative ecosystem approach exploring alternative hypotheses, ranging from bottom-up to top-down control, not forgetting epizootic diseases. First, the study of multiple population characteristics highlighted a decrease in body condition for both species as well as an important decrease in size resulting from both a slower growth and a progressive disappearance of older sardines. Interestingly, older sardines were more affected by the decrease in condition than younger ones, another sign of an unbalanced population structure. While top-down control by bluefin tuna or dolphins, emigration and disease were mostly discarded as important drivers, bottom-up control mediated by potential changes in the plankton community appeared to play an important role via a decrease in fish energy income and hence growth, condition and size. Isotopic and stomach content analyses indicated a dietary shift pre- and post-2008 and modeled mesozooplankton abundance was directly linked to fish condition. Despite low energy reserves from 2008 onwards, sardines and anchovies maintained if not increased their reproductive investment, likely altering the life-history trade-off between reproduction and survival and resulting in higher natural mortality. The current worrying situation might thus have resulted from changes in plankton availability/diversity, which remains to be thoroughly investigated together with fish phenotypic plasticity.  
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  ISSN 0967-0645 ISBN Médium  
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  Numéro d'Appel MARBEC @ isabelle.vidal-ayouba @ collection 2526  
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Auteur (down) Pringault, O.; Tesson, S.; Rochelle-Newall, E. url  doi
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  Titre Respiration in the Light and Bacterio-Phytoplankton Coupling in a Coastal Environment Type Article scientifique
  Année 2009 Publication Revue Abrégée Microb. Ecol.  
  Volume 57 Numéro 2 Pages 321-334  
  Mots-Clés bacteria; dissolved organic-carbon; enhanced dark; growth efficiency; heterotrophic; marine bacterioplankton; nw mediterranean sea; post-illumination respiration; respiration; salt-marsh estuaries; solar; ultraviolet-radiation; uv-radiation  
  Résumé In pelagic ecosystems, the principal source of organic matter is via autotrophic production and the primary sink is through heterotrophic respiration. One would therefore anticipate that there is some degree of linkage between these two compartments. Recent work has shown that respiration in the light is higher than dark respiration. Consequently, many of the methods used to determine respiration and production are biased as they require the assumption that light and dark respiration rates are equivalent. We show here that, in a coastal ecosystem, under visible light exposure, respiration in the light is related to gross production. More than 60% of the variation of respiration in the light, measured at 1 to 40 A mu g L(-1) of chlorophyll a (Chla), could be explained by the variations of gross production. Secondly, the relative contribution of bacterial respiration to community respiration in the light represented up to 79% at low Chla (1 A mu g L(-1)) and was negatively correlated with Chla concentration. Although bacterial production and bacterial respiration were both enhanced in the light, bacterial respiration in the light was more stimulated than bacterial production, which resulted in a decrease in bacterial growth efficiency during light exposure. These results show that the impact of light on the functioning of the microbial loop needs to be taken into account for a better understanding of the oceanic carbon cycle.  
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  ISSN 0095-3628 ISBN Médium  
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  Numéro d'Appel MARBEC @ isabelle.vidal-ayouba @ collection 826  
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Auteur (down) PETHYBRIDGE, H.; ROOS, D.; LOIZEAU, V.; PECQUERIE, L.; BACHER, C. url  openurl
  Titre Responses of European anchovy vital rates and population growth to environmental fluctuations: An individual-based modeling approach Type Article scientifique
  Année 2013 Publication Revue Abrégée Ecological Modelling  
  Volume 250 Numéro Pages 370-383  
  Mots-Clés Dynamic Energy Budget theory; Engraulis encrasicolus; Environmental variability; Fecundity; growth; NW Mediterranean Sea  
  Résumé A size-structured, bioenergetics model was implemented to examine the effects of short-term environmental changes on European anchovy, Engraulis encrasicolus, in the North-western Mediterranean Sea. The model approach was based on Dynamic Energy Budget (DEB) theory and details the acquisition and allocation of energy (J d(-1)) during an organisms' full life-cycle. Model calibration was achieved using biometric data collected from the Gulf of Lions between 2002 and 2011. Bioenergetics simulations successfully captured ontogenetic and seasonal growth patterns, including active growth in spring/summer, loss of mass in autumn/winter and the timing and amplitude of multi-batch spawning events. Scenario analysis determined that vital rates (growth and fecundity) were highly sensitive to short-term environmental changes. The DEB model provided a robust foundation for the implementation of an individual-based population model (IBM) in which we used to test the responses of intrinsic and density-independent population growth rates (r) to observed and projected environmental variability. IBM projections estimate that r could be reduced by as much as 15% (relative to that estimated under mean conditions) due to either a 5% (0.8 degrees C) drop in temperature (due to a reduced spawning duration), a 18% (25 mg zooplankton m(-3)) depletion in food supply, a 30% increase in egg mortality rates, or with the phytoplankton bloom peaking 5 weeks earlier (in late-February/Winter). The sensitivity of r to short-term (1 year) and long-term (4-10 year) environmental changes were similar, highlighting the importance of first-year spawners. In its current form, the models presented here could be incorporated into spatially-explicit, higher-trophic (predator-prey and end-to-end ecosystem), larval-dispersal and toxicokinetic models or adapted to other short-lived foraging fish (clupeid) species. (C) 2012 Elsevier B.V. All rights reserved.  
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  ISSN 0304-3800 ISBN Médium  
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  Numéro d'Appel LL @ pixluser @ collection 248  
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Auteur (down) Heymans, J.J.; Coll, M.; Link, J.S.; Mackinson, S.; Steenbeek, J.; Walters, C.; Christensen, V. doi  openurl
  Titre Best practice in Ecopath with Ecosim food-web models for ecosystem-based management Type Article scientifique
  Année 2016 Publication Revue Abrégée Ecol. Model.  
  Volume 331 Numéro Pages 173-184  
  Mots-Clés benguela ecosystem; dynamics; Ecological network analysis; Ecopath with Ecosim; Ecosystem-based management; Ecosystem modelling; exploited ecosystems; impacts; indicators; marine ecosystems; Monte Carlo; network analysis; nw mediterranean sea; shelf ecosystem; southern benguela; Time series fitting  
  Résumé Ecopath with Ecosim (EwE) models are easier to construct and use compared to most other ecosystem modelling techniques and are therefore more widely used by more scientists and managers. This, however, creates a problem with quality assurance; to address this we provide an overview of best practices for creating Ecopath, models. We describe the diagnostics that can be used to check for thermodynamic and ecological principles, and highlight principles that should be used for balancing a model. We then highlight the pitfalls when comparing Ecopath models using Ecological Network Analysis indices. For dynamic simulations in Ecosim we show the state of the art in calibrating the model by fitting it to time series using a formal fitting procedure and statistical goodness of fit. Finally, we show how Monte Carlo simulations can be used to address uncertainty in input parameters, and we discuss the use of models in a management context, specifically using the concept of 'key runs' for ecosystem-based management. This novel list of best practices for EwE models will enable ecosystem managers to evaluate the goodness of fit of the given EwE model to the ecosystem management question. (C) 2016 The Authors. Published by Elsevier B.V.  
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  ISSN 0304-3800 ISBN Médium  
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  Numéro d'Appel MARBEC @ alain.herve @ collection 1644  
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