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Auteur (up) Albouy, C.; Velez, L.; Coll, M.; Colloca, F.; Le Loc'h, F.; Mouillot, D.; Gravel, D.
Titre From projected species distribution to food-web structure under climate change Type Article scientifique
Année 2014 Publication Revue Abrégée Global Change Biology
Volume 20 Numéro 3 Pages 730-741
Mots-Clés climate change; connectance; fish body size; food-webs; generality; Mediterranean Sea; metaweb; niche model; vulnerability
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ISSN 1354-1013 ISBN Médium
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Numéro d'Appel LL @ pixluser @ collection 324
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Auteur (up) Arnaud-Haond, S.; Aires, T.; Candeias, R.; Teixeira, S.J.L.; Duarte, C.M.; Valero, M.; Serrao, E.A.
Titre Entangled fates of holobiont genomes during invasion: nested bacterial and host diversities in Caulerpa taxifolia Type Article scientifique
Année 2017 Publication Revue Abrégée Mol. Ecol.
Volume 26 Numéro 8 Pages 2379-2391
Mots-Clés Algae; australia; Caulerpa; Chlorophyta; clonal diversity; dna; endophytic communities; genetic diversity; holobiont; invasion paradox; marine invasion; Mediterranean Sea; microsatellite markers; parasites; plant invasions; polymorphism
Résumé Successful prevention and mitigation of biological invasions requires retracing the initial steps of introduction, as well as understanding key elements enhancing the adaptability of invasive species. We studied the genetic diversity of the green alga Caulerpa taxifolia and its associated bacterial communities in several areas around the world. The striking congruence of alpha and beta diversity of the algal genome and endophytic communities reveals a tight association, supporting the holobiont concept as best describing the unit of spreading and invasion. Both genomic compartments support the hypotheses of a unique accidental introduction in the Mediterranean and of multiple invasion events in southern Australia. In addition to helping with tracing the origin of invasion, bacterial communities exhibit metabolic functions that can potentially enhance adaptability and competitiveness of the consortium they form with their host. We thus hypothesize that low genetic diversities of both host and symbiont communities may contribute to the recent regression in the Mediterranean, in contrast with the persistence of highly diverse assemblages in southern Australia. This study supports the importance of scaling up from the host to the holobiont for a comprehensive understanding of invasions.
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ISSN 0962-1083 ISBN Médium
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Numéro d'Appel MARBEC @ alain.herve @ collection 2143
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Auteur (up) Arnaud-Haond, S.; van den Beld, I.M.J.; Becheler, R.; Orejas, C.; Menot, L.; Frank, N.; Grehan, A.; Bourillet, J.F.
Titre Two “pillars” of cold-water coral reefs along Atlantic European margins: Prevalent association of Madrepora oculata with Lophelia pertusa, from reef to colony scale Type Article scientifique
Année 2017 Publication Revue Abrégée Deep-Sea Res. Part II-Top. Stud. Oceanogr.
Volume 145 Numéro Pages 110-119
Mots-Clés community; bay; Bay of Biscay; Lophelia pertusa; Madrepora oculata; biscay; mediterranean sea; Cold water corals (CWC); deep-sea corals; False-chimaera colonies; fleuve manche; hydrodynamics; Iceland; Ireland; megafauna; mid-norway; ne atlantic
Résumé The scleractinian coral Lophelia pertusa has been the focus of deep-sea research since the recognition of the vast extent of coral reefs in North Atlantic waters two decades ago, long after their existence was mentioned by fishermen. These reefs where shown to provide habitat, concentrate biomass and act as feeding or nursery grounds for many species, including those targeted by commercial fisheries. Thus, the attention given to this cold-water coral (CWC) species from researchers and the wider public has increased. Consequently, new research programs triggered research to determine the full extent of the corals geographic distribution and ecological dynamics of “Lophelia reefs”. The present study is based on a systematic standardised sampling design to analyze the distribution and coverage of CWC reefs along European margins from the Bay of Biscay to Iceland. Based on Remotely Operated Vehicle (ROV) image analysis, we report an almost systematic occurrence of Madrepora oculata in association with L. pertusa with similar abundances of both species within explored reefs, despite a tendency of increased abundance of L. pertusa compared to M. oculata toward higher latitudes. This systematic association occasionally reached the colony scale, with “twin” colonies of both species often observed growing next to each other when isolated structures were occurring offireefs. Finally, several “false chimaera” were observed within reefs, confirming that colonial structures can be “coral bushes” formed by an accumulation of multiple colonies even at the inter-specific scale, with no need for self-recognition mechanisms. Thus, we underline the importance of the hitherto underexplored M. oculata in the Eastern Atlantic, reestablishing a more balanced view that both species and their yet unknown interactions are required to better elucidate the ecology, dynamics and fate of European CWC reefs in a changing environment.
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ISSN 0967-0645 ISBN Médium
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Numéro d'Appel MARBEC @ alain.herve @ collection 2256
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Auteur (up) Authier, M.; Saraux, C.; Péron, C.
Titre Variable selection and accurate predictions in habitat modelling: a shrinkage approach Type Article scientifique
Année 2017 Publication Revue Abrégée Ecography
Volume 40 Numéro 4 Pages 549-560
Mots-Clés account; distributional data; Ecology; indian-ocean; inference; Mediterranean Sea; regression methods; small pelagic fish; spatial autocorrelation; species distribution models
Résumé Habitat modelling is increasingly relevant in biodiversity and conservation studies. A typical application is to predict potential zones of specific conservation interest. With many environmental covariates, a large number of models can he investigated but multi-model inference may become impractical. Shrinkage regression overcomes this issue by dealing with the identification and accurate estimation of effect size for prediction. In a Bayesian framework we investigated the use of a shrinkage prior, the Horseshoe, for variable selection in spatial generalized linear models (GLM). As study cases, we considered 5 datasets on small pelagic fish abundance in the Gulf of Lion (Mediterranean Sea, France) and 9 environmental inputs. We compared the predictive performances of a simple kriging model, a full spatial GLM model with independent normal priors for regression coefficients, a full spatial GLM model with a Horseshoe prior for regression coefficients and 2 zero-inflated models (spatial and non-spatial) with a Horseshoe prior. Predictive performances were evaluated by cross validation on a hold-out subset of the data: models with a Horseshoe prior performed best, and the full model with independent normal priors worst. With an increasing number of inputs, extrapolation quickly became pervasive as we tried to predict from novel combinations of covariate values. By shrinking regression coefficients with a Horseshoe prior, only one model needed to be fitted to the data in order to obtain reasonable and accurate predictions, including extrapolations.
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ISSN 0906-7590 ISBN Médium
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Numéro d'Appel MARBEC @ alain.herve @ collection 2130
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Auteur (up) Ayata, S.-D.; Irisson, J.-O.; Aubert, A.; Berline, L.; Dutay, J.-C.; Mayot, N.; Nieblas, A.-E.; D'Ortenzio, F.; Palmiéri, J.; Reygondeau, G.; Rossi, V.; Guieu, C.
Titre Regionalisation of the Mediterranean basin, a MERMEX synthesis Type Article scientifique
Année 2018 Publication Progress in Oceanography Revue Abrégée
Volume 163 Numéro Pages 7-20
Mots-Clés Mediterranean Sea; regionalisation; biogeochemistry; circulation; mesoscale features; epipelagic ocean; management; spatial planning
Résumé Regionalisation aims at delimiting provinces within which physical conditions, chemical properties, and biological communities are reasonably homogeneous. This article proposes a synthesis of the many recent regionalisations of the open-sea regions of the Mediterranean Sea. The nine studies considered here defined regions based on different, and sometimes complementary, criteria: dynamics of surface chlorophyll concentration, ocean currents, three-dimensional hydrological and biogeochemical properties, or the distribution of organisms. Although they identified different numbers and patterns of homogeneous regions, their compilation in the epipelagic zone identifies nine consensus frontiers, eleven consensus regions with relatively homogeneous conditions, and four heterogeneous regions with highly dynamical conditions. The consensus frontiers and regions are in agreement with well-known hydrodynamical features of the Mediterranean Sea, which constrain the distribution of hydrological and ecological variables. The heterogeneous regions are rather defined by intense mesoscale activity. The synthesis proposed here could constitute a reference step for management actions and spatial planning, such as the application of the European Marine Strategy Framework Directive, and for future biogeochemical and ecological studies in the Mediterranean Sea.
Adresse Center for Prototype Climate Modeling, New York University Abu Dhabi, P.O. Box 129188, Abu Dhabi, United Arab Emirates
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Editeur Elsevier BV Lieu de Publication Éditeur
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ISSN 0079-6611 ISBN Médium
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Numéro d'Appel MARBEC @ isabelle.vidal-ayouba @ 51673 collection 2349
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