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Auteur Christensen, V.; Coll, M.; Steenbeek, J.; Buszowski, J.; Chagaris, D.; Walters, C.J. url  doi
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  Titre Representing Variable Habitat Quality in a Spatial Food Web Model Type Article scientifique
  Année 2014 Publication Revue Abrégée Ecosystems  
  Volume 17 Numéro 8 Pages 1397-1412  
  Mots-Clés Ecology; Ecopath; ecospace; Environmental Management; food web model; foraging capacity model; Geoecology/Natural Processes; habitat modeling; Hydrology/Water Resources; Plant Sciences; sampling; simulation model; species distribution model; Zoology  
  Résumé Why are marine species where they are? The scientific community is faced with an urgent need to understand aquatic ecosystem dynamics in the context of global change. This requires development of scientific tools with the capability to predict how biodiversity, natural resources, and ecosystem services will change in response to stressors such as climate change and further expansion of fishing. Species distribution models and ecosystem models are two methodologies that are being developed to further this understanding. To date, these methodologies offer limited capabilities to work jointly to produce integrated assessments that take both food web dynamics and spatial-temporal environmental variability into account. We here present a new habitat capacity model as an implementation of the spatial-temporal model Ecospace of the Ecopath with Ecosim approach. The new model offers the ability to drive foraging capacity of species from the cumulative impacts of multiple physical, oceanographic, and environmental factors such as depth, bottom type, temperature, salinity, oxygen concentrations, and so on. We use a simulation modeling procedure to evaluate sampling characteristics of the new habitat capacity model. This development bridges the gap between envelope environmental models and classic ecosystem food web models, progressing toward the ability to predict changes in marine ecosystems under scenarios of global change and explicitly taking food web direct and indirect interactions into account.  
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  ISSN 1432-9840, 1435-0629 ISBN Médium  
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  Numéro d'Appel MARBEC @ isabelle.vidal-ayouba @ collection 1196  
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Auteur Le Pape, O.; Bonhommeau, S. url  doi
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  Titre The food limitation hypothesis for juvenile marine fish Type Article scientifique
  Année 2013 Publication Revue Abrégée Fish and Fisheries  
  Volume Numéro Pages  
  Mots-Clés Estuaries and coasts; food limitation; habitat functionality; juvenile fish growth; size-dependent mortality; trophic capacity of nursery habitat  
  Résumé Coastal zones are productive areas that serve as nursery grounds for a large number of marine species. However, the processes involved in survival success during the juvenile phase are not well-known. Some authors suggest that the availability of prey is important to support the production of pre-recruit fish whose fitness is enhanced through optimal feeding conditions. Accordingly, recruitment is limited by the carrying capacity of the nursery habitat. In contrast, other authors state that the carrying capacity of the nursery grounds is not fully exploited, suggesting that there is no effect of food limitation. This study combines an overview of the literature, focused on flatfish that are especially dependent on coastal and estuarine nursery grounds, an extension to other marine fishes and a modelling approach on growth and survival of juvenile fish to explore the controversy of food limitation in their nursery grounds. We demonstrate that the relative lack of growth limitation observed for young marine fishes at the individual scale is related to an observational bias: fish have been affected by size-selective mortality linked to food limitation, but only surviving individuals are observed. As the population is skewed towards the faster-growing juveniles, the growth of survivors remains close to optimal, even when food resources are limited. Food limitation is of major influence in determining the carrying capacity of the nursery habitat. To sustain marine fish populations and related fisheries, management action is needed to protect coastal and estuarine areas and maintain or restore nursery productivity.  
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  ISSN 1467-2979 ISBN Médium  
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  Numéro d'Appel LL @ pixluser @ collection 271  
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Auteur Tedesco, P.A.; Oberdorff, T.; Cornu, J.-F.; Beauchard, O.; Brosse, S.; Dürr, H.H.; Grenouillet, G.; Leprieur, F.; Tisseuil, C.; Zaiss, R.; Hugueny, B. url  doi
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  Titre A scenario for impacts of water availability loss due to climate change on riverine fish extinction rates Type Article scientifique
  Année 2013 Publication Revue Abrégée Journal of Applied Ecology  
  Volume 50 Numéro 5 Pages 1105-1115  
  Mots-Clés aridity index; current anthropogenic threats; diversity loss; drainage area; freshwater fish diversity; habitat availability; time to extinction  
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  ISSN 1365-2664 ISBN Médium  
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  Numéro d'Appel MARBEC @ isabelle.vidal-ayouba @ collection 405  
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Auteur Druon, J.-N.; Fromentin, J.-M.; Hanke, A.R.; Arrizabalaga, H.; Damalas, D.; Tičina, V.; Quílez-Badia, G.; Ramirez, K.; Arregui, I.; Tserpes, G.; Reglero, P.; Deflorio, M.; Oray, I.; Saadet Karakulak, F.; Megalofonou, P.; Ceyhan, T.; Grubišić, L.; MacKenzie, B.R.; Lamkin, J.; Afonso, P.; Addis, P. url  doi
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  Titre Habitat suitability of the Atlantic bluefin tuna by size class: An ecological niche approach Type Article scientifique
  Année 2016 Publication Revue Abrégée Progress in Oceanography  
  Volume 142 Numéro Pages 30-46  
  Mots-Clés ecological niche; Environmental conditions; Feeding; Gulf of Mexico; habitat; Mediterranean sea; North Atlantic; Spawning; Thunnus thynnus  
  Résumé An ecological niche modelling (ENM) approach was used to predict the potential feeding and spawning habitats of small (5-25kg, only feeding) and large (> 25kg) Atlantic bluefin tuna (ABFT), Thunnus thynnus, in the Mediterranean Sea, the North Atlantic and the Gulf of Mexico. The ENM was built bridging knowledge on ecological traits of ABFT (e.g. temperature tolerance, mobility, feeding and spawning strategy) with patterns of selected environmental variables (chlorophyll-a fronts and concentration, sea surface current and temperature, sea surface height anomaly) that were identified using an extensive set of precisely geo-located presence data. The results highlight a wider temperature tolerance for larger fish allowing them to feed in the northern – high chlorophyll levels – latitudes up to the Norwegian Sea in the eastern Atlantic and to the Gulf of Saint Lawrence in the western basin. Permanent suitable feeding habitat for small ABFT was predicted to be mostly located in temperate latitudes in the North Atlantic and in the Mediterranean Sea, as well as in subtropical waters off north-west Africa, while summer potential habitat in the Gulf of Mexico was found to be unsuitable for both small and large ABFTs. Potential spawning grounds were found to occur in the Gulf of Mexico from March-April in the south-east to April-May in the north, while favourable conditions evolve in the Mediterranean Sea from mid-May in the eastern to mid-July in the western basin. Other secondary potential spawning grounds not supported by observations were predicted in the Azores area and off Morocco to Senegal during July and August when extrapolating the model settings from the Gulf of Mexico into the North Atlantic. The presence of large ABFT off Florida and the Bahamas in spring was not explained by the model as is, however the environmental variables other than the sea surface height anomaly appeared to be favourable for spawning in part of this area. Defining key spatial and temporal habitats should further help in building spatially-explicit stock assessment models, thus improving the spatial management of bluefin tuna fisheries.  
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  ISSN 0079-6611 ISBN Médium  
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  Numéro d'Appel MARBEC @ isabelle.vidal-ayouba @ collection 1514  
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Auteur Arrizabalaga, H.; Dufour, F.; Kell, L.; Merino, G.; Ibaibarriaga, L.; Chust, G.; Irigoien, X.; Santiago, J.; Murua, H.; Fraile, I.; Chifflet, M.; Goikoetxea, N.; Sagarminaga, Y.; Aumont, O.; Bopp, L.; Herrera, M.; FROMENTIN, J.-M.; Bonhomeau, S. url  doi
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  Titre Global habitat preferences of commercially valuable tuna Type Article scientifique
  Année 2015 Publication Deep Sea Research Part II: Topical Studies in Oceanography Revue Abrégée  
  Volume 113 Numéro Pages 102-112  
  Mots-Clés Habitat; Tuna fisheries; Catch/ effort; Environmental conditions; Quotient analysis; Generalized Additive Models; Ecosystem Approach to Fisheries Management  
  Résumé In spite of its pivotal role in future implementations of the Ecosystem Approach to Fisheries Management, current knowledge about tuna habitat preferences remains fragmented and heterogeneous, because it relies mainly on regional or local studies that have used a variety of approaches making them difficult to combine. Therefore in this study we analyse data from six tuna species in the Pacific, Atlantic and Indian Oceans in order to provide a global, comparative perspective of habitat preferences. These data are longline catch per unit effort from 1958 to2007 for albacore, Atlantic bluefin, southern bluefin, bigeye, yellowfin and skipjack tunas. Both quotient analysis and Generalized Additive Models were used to determine habitat preference with respect to eight biotic and abiotic variables. Results confirmed that, compared to temperate tunas, tropical tunas prefer warm, anoxic, stratified waters. Atlantic and southern bluefin tuna prefer higher concentrations of chlorophyll than the rest. The two species also tolerate most extreme sea surface height anomalies and highest mixed layer depths. In general, Atlantic bluefin tuna tolerates the widest range of environmental conditions. An assessment of the most important variables determining fish habitat is also provided.  
  Adresse Ifremer, UMR 212 EME, boulevard Jean Monnet, BP 171, Sete Cedex, 34203, France  
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  Editeur Elsevier BV Lieu de Publication Éditeur  
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  ISSN 0967-0645 ISBN Médium  
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  Numéro d'Appel MARBEC @ isabelle.vidal-ayouba @ 31190 collection 981  
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