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Auteur (up) Baklouti, M.; Chevalier, C.; Bouvy, M.; Corbin, D.; Pagano, M.; Troussellier, M.; Arfi, R.
Titre A study of plankton dynamics under osmotic stress in the Senegal River Estuary, West Africa, using a 3D mechanistic model Type Article scientifique
Année 2011 Publication Revue Abrégée Ecological Modelling
Volume 222 Numéro 15 Pages 2704-2721
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Numéro d'Appel MARBEC @ isabelle.vidal-ayouba @ collection 400
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Auteur (up) Bănaru, D.; Diaz, F.; Verley, P.; Campbell, R.; Navarro, J.; Yohia, C.; Oliveros-Ramos, R.; Mellon-Duval, C.; Shin, Y.-J.
Titre Implementation of an end-to-end model of the Gulf of Lions ecosystem (NW Mediterranean Sea). I. Parameterization, calibration and evaluation Type Article scientifique
Année 2019 Publication Revue Abrégée Ecological Modelling
Volume 401 Numéro Pages 1-19
Mots-Clés Ecosystem modeling; Osmose; Fisheries; Food web; Eco3M
Résumé An end-to-end model named OSMOSE-GoL has been built for the Gulf of Lions, the main French Mediterranean fishing area. This spatialized dynamic model links the coupled hydrodynamic and biogeochemical model Eco3M-S/SYMPHONIE (LTL – low trophic level model) to OSMOSE (HTL – high trophic level model). It includes 15 compartments of living organisms, five from the LTL model (i.e. nanophytoplankton, microphytoplankton, nanozooplankton, microzooplankton and mesozooplankton) and ten from the HTL model (northern krill, southern shortfin squid, European pilchard, European anchovy, European sprat, Atlantic horse mackerel, Atlantic mackerel, blue whiting, European hake and Atlantic bluefin tuna). With the exception of northern krill and European sprat, all HTL species are commercially exploited and undergo fisheries mortality pressure. The modeled species represent more than 70% of annual catches in this area. This paper presents the parameterization, calibration and evaluation of this model with satellite data for phytoplankton and with biomass, landings, diet and trophic level data for HTL groups. For most species, the diets in output of OSMOSE-GoL are similar to field and literature data in terms of dominant prey groups and species. However, some differences were observed. Various reasons may explain the mismatch between the modeled diet and field data. Benthic prey sometimes observed in the stomach content of the HTL predators were not modeled in OSMOSE-GoL. Field studies were carried out at specific periods and locations, while our data concern the period 2001–2004 and the entire modeled domain. Inter- and intra-annual variations in spatial distribution and density of prey may also explain these differences. The model estimates trophic level values similar to those cited in the literature for all the HTL compartments. These values are also close to the trophic levels estimated by a previous Ecopath model for the same area and period. Even though some improvements are still possible, this model may already be of use to explore fishery or Marine Protected Areas scenarios for socio-ecosystem management issues.
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Numéro d'Appel MARBEC @ isabelle.vidal-ayouba @ collection 2550
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Auteur (up) Boyd, C.; Punt, A.E.; Weimerskirch, H.; Bertrand, S.
Titre Movement models provide insights into variation in the foraging effort of central place foragers Type Article scientifique
Année 2014 Publication Revue Abrégée Ecological Modelling
Volume 286 Numéro Pages 13-25
Mots-Clés Animal movement; Foraging ecology; Hidden Markov model; Provisioning theory; Seabirds; Sula variegata
Résumé Ecology and conservation depend on an understanding of how animals adjust their behaviour patterns in response to changes in their environment. Central place foragers (CPFs) are well-suited for developing ecological models of adaptive processes because their objective functions and operational constraints can be reasonably inferred. Central place foraging and provisioning theory provide the theoretical framework for this analysis. Analysis of CPF time allocation and energy budgets can provide insights into their strategies for responding to environmental variation. However, until recently, suitable high-resolution data on the behaviour of seabirds and other CPFs at sea have not been available. Previous studies of breeding seabirds have investigated variation in foraging trip duration and colony attendance, but few studies have analyzed variation in time allocation within foraging trips. Here, we develop a conceptual energy-based model for analysing variation in the time allocation of CPFs during foraging trips, and apply it to the movement patterns of Peruvian boobies (Sula variegata). Foraging trips of Peruvian boobies, recorded using high-resolution global positioning systems (GPS), were first partitioned into movement modes consistent with travel and foraging behaviours using a hidden Markov model (HMM) adapted to account for gaps in the GPS tracks associated with diving behaviour. Analysis of the HMM results based on the conceptual model indicated that differences in foraging effort between two treatments were best explained by a combination of differences in travel time and in time spent searching for prey. The conceptual model provides the basis for an integrated approach to analysis of variation in foraging strategies in which identification of various behaviours is coupled with assessments of time and energy budgets. This integrated approach can contribute to greater understanding of the processes determining foraging strategies and the limits to these strategies in the context of competition for resources and global climate change.
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Numéro d'Appel LL @ pixluser @ collection 355
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Auteur (up) Diaz, F.; Bănaru, D.; Verley, P.; Shin, Y.-J.
Titre Implementation of an end-to-end model of the Gulf of Lions ecosystem (NW Mediterranean Sea). II. Investigating the effects of high trophic levels on nutrients and plankton dynamics and associated feedbacks Type Article scientifique
Année 2019 Publication Revue Abrégée Ecological Modelling
Volume 405 Numéro Pages 51-68
Mots-Clés End-to-end model; Fisheries; Food web functioning; Plankton; Two-ways coupling
Résumé The end-to-end OSMOSE-GoL model parameterized, calibrated and evaluated for the Gulf of Lions ecosystem (Northwestern Mediterranean Sea) has been used to investigate the effects of introducing two-ways coupling between the dynamics of Low and High Trophic Level groups. The use of a fully dynamic two-ways coupling between the models of Low and High Trophic Levels organisms provided some insights in the functioning of the food web in the Gulf of Lions. On the whole microphytoplankton and mesozooplankton were found to be preyed upon by High Trophic Levels planktivorous groups at rates lower than 20% and 30% of their respective natural mortality rates, but these relatively low rates involved some important alterations in the infra-seasonal and annual cycles of both High and Low Trophic Levels groups. They induced significant changes in biomass, fisheries landings and food web interactions by cascading effects. Spatial differential impacts of High Trophic Levels predation on plankton are less clear except in areas in which primary productivity is high. Higher predation rates on plankton groups were encountered within the area of the Rhone river’s influence and in areas associated to the presence of mesoscale eddies in the Northwestern part of the Gulf of Lions, especially. Generally, the pressure of the High Trophic Levels predation was the highest in areas of highest biomass whatever the plankton group considered. The two-ways coupling between Low and High Trophic Levels models revealed both bottom-up and top-down controls in the ecosystem with effects on planktivorous species similar to those observed in the field. The use of the end-to-end model enabled to propose a set of potential mechanisms that may explain the observed decrease in small pelagic catches by the French Mediterranean artisanal fisheries over the last decade.
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Numéro d'Appel MARBEC @ isabelle.vidal-ayouba @ collection 2577
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Auteur (up) Duboz, R.; Versmisse, D.; Travers, M.; Ramat, E.; Shin, Y.-J.
Titre Application of an evolutionary algorithm to the inverse parameter estimation of an individual-based model Type Article scientifique
Année 2010 Publication Revue Abrégée Ecological Modelling
Volume 221 Numéro Pages 840-849
Mots-Clés algorithms; and; calibration; ecosystem; estimation; Evolutionary; genetic; Individual-based; marine; model; Parameter
Résumé Inverse parameter estimation of individual-based models (IBMs) is a research area which is still in its infancy, in a context where conventional statistical methods are not well suited to confront this type of models with data. In this paper, we propose an original evolutionary algorithm which is designed for the calibration of complex IBMs, i.e. characterized by high stochasticity, parameter uncertainty and numerous non-linear interactions between parameters and model output. Our algorithm corresponds to a variant of the population-based incremental learning (PBIL) genetic algorithm, with a specific “optimal individual” operator. The method is presented in detail and applied to the individual-based model OSMOSE. The performance of the algorithm is evaluated and estimated parameters are compared with an independent manual calibration. The results show that automated and convergent methods for inverse parameter estimation are a significant improvement to existing ad hoc methods for the calibration of IBMs.
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Numéro d'Appel LL @ pixluser @ collection 69
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