Résumé: Understanding how aquatic ecosystems respond to perturbations has emerged as a crucial way to predict the future of these ecosystems and to assess their capacity to produce oxygen and store atmospheric carbon. In this context, in situ mesocosm experiments are a useful approach for simulating disturbances and observing changes in planktonic communities over time and under controlled conditions. Within mesocosm experiments, the estimation of fundamental parameters such as gross primary production (GPP), net community production (NCP), and respiration (R) allows the evaluation of planktonic metabolic responses to a perturbation. The continuous estimation of these metabolic parameters in real time and at high frequency is made possible by employing noninvasive automated sensors in the water column. However, some uncertainties and methodological questions about the estimation of daytime respiration remain to be addressed for this method, and notably to address the fact that respiration could be significantly higher during the day than during the night. In this study, data from two in situ mesocosm experiments performed in fall and spring in a coastal Mediterranean area were used to develop a new method of estimating daytime respiration, and in turn daily GPP, R, and NCP, by considering the maximum instantaneous R, and that takes into account the variability of the coupling between day–night and dissolved oxygen cycles. This new method was compared with the Winkler incubation technique and with another existing method. Results showed that using this existing method, daytime R was significantly underestimated relative to estimates obtained with the newly proposed method.

Résumé: Microbial food web organisms are at the base of the functioning of pelagic ecosystems and support the whole marine food web. They are very reactive to environmental changes and their interactions are modified in response to different productive periods such as phytoplankton bloom and non-bloom as well as contrasted climatic years. To study ecological associations, identify potential interactions between microorganisms and study the structure of the microbial food web in coastal waters, a weekly monitoring was carried out in the Thau Lagoon on the French Mediterranean coast. The monitoring lasted from winter to late spring during two contrasting climatic years, a typical Mediterranean (2015) and a year with an extreme warm winter (2016). Correlation networks comprising 110 groups/taxa/species were constructed to characterize potential possible interactions between the microorganisms during bloom and non-bloom periods. Complex correlation networks during the bloom and dominated by negative intraguild correlations and positive correlations of phytoplankton with bacteria. Such pattern can be interpreted as a dominance of competition and mutualism. In contrast, correlation networks during the non-bloom period were less complex and mostly dominated by tintinnids associations with bacteria mostly referring to potential feeding on bacteria, which suggests a shift of biomass transfer from phytoplankton-dominated food webs during bloom to more bacterioplankton-based food webs during non-bloom. Inter-annual climatic conditions significantly modified the structure of microbial food webs. The warmer year favored relationships among smaller group/taxa/species at the expense of large phytoplankton and ciliates, possibly due to an intensification of the trophic cascade with a potential shift in energy circulation through microbial food web. Our study compares a typical Mediterranean spring with another mimicking the prospected intensification of global warming; if such consideration holds true, the dominance of future coastal marine ecosystems will be shifted from the highly productive herbivorous food web to the less productive microbial food web.

Résumé: Phytoplankton blooms are an important, widespread phenomenon in open oceans, coastal waters and freshwaters, supporting food webs and essential ecosystem services. Blooms are even more important in exploited coastal waters for maintaining high resource production. However, the environmental factors driving blooms in shallow productive coastal waters are still unclear, making it difficult to assess how environmental fluctuations influence bloom phenology and productivity. To gain insights into bloom phenology, Chl a fluorescence and meteorological and hydrological parameters were monitored at high-frequency (15 min) and nutrient concentrations and phytoplankton abundance and diversity, were monitored weekly in a typical Mediterranean shallow coastal system (Thau Lagoon). This study was carried out from winter to late spring in two successive years with different climatic conditions: 2014/2015 was typical, but the winter of 2015/2016 was the warmest on record. Rising water temperature was the main driver of phytoplankton blooms. However, blooms were sometimes correlated with winds and sometimes correlated with salinity, suggesting nutrients were supplied by water transport via winds, saltier seawater intake, rain and water flow events. This finding indicates the joint role of these factors in determining the success of phytoplankton blooms. Furthermore, interannual variability showed that winter water temperature was higher in 2016 than in 2015, resulting in lower phytoplankton biomass accumulation in the following spring. Moreover, the phytoplankton abundances and diversity also changed: cyanobacteria (< 1 μm), picoeukaryotes (< 1 μm) and nanoeukaryotes (3–6 μm) increased to the detriment of larger phytoplankton such as diatoms. Water temperature is a key factor affecting phytoplankton bloom dynamics in shallow productive coastal waters and could become crucial with future global warming by modifying bloom phenology and changing phytoplankton community structure, in turn affecting the entire food web and ecosystem services.

Résumé: A plankton community (< 202 μm) from the St. Lawrence Estuary was isolated
in four outdoor mesocosms with SLOW and fast mixing regimes. Variations in the concentrations
of nutrients, chlorophyll a (Chl a), nitrogen transport rates and plankton species composition
were monitored over a 10 day period. The vertical mixing times (Tm) for the slow and
fast mixing regimes were 180 and 60 min, corresponding to a vertical eddy diffusivity (Kv) of
2.34 and 7.03 cm2 s–1, respectively. The different mixing regimes had a strong effect on the
physiology of the phytoplankton and the specific structure of the plankton assemblage. The
Slow mixing regime stimulated the development of a mixed community of flagellates, small
diatoms and proto-metazooplankton while the fast mixing regime triggered the development
of a large diatom-dominated community with lower abundances of proto-metazooplankton. At
the end of the 10 day experiment, the Chl a concentrations were 50 % higher in the mesocosms
with the fast mixing regime than in those with the slow mixing regime. These results indicate
that, under low nutrient conditions, higher turbulence gives a competitive advantage to diatoms
and decreases the zooplankton grazing pressure, resulting in net positive growth. Extrapolation
of these results to natural systems suggests that a wind-driven mixing event may increase
the net phytoplankton biomass production of a stratified water column, even if there is no external
input of nutrients.

Résumé: The growth rates of planktonic microbes in the pelagic zone of the Eastern Mediterranean Sea are nutrient limited, but the type of limitation is still uncertain. During this study, we investigated the occurrence of N and P limitation among different groups of the prokaryotic and eukaryotic (pico-, nano-, and micro-) plankton using a microcosm experiment during stratified water column conditions in the Cretan Sea (Eastern Mediterranean). Microcosms were enriched with N and P (either solely or simultaneously), and the PO4 turnover time, prokaryotic heterotrophic activity, primary production, and the abundance of the different microbial components were measured. Flow cytometric and molecular fingerprint analyses showed that different heterotrophic prokaryotic groups were limited by different nutrients; total heterotrophic prokaryotic growth was limited by P, but only when both N and P were added, changes in community structure and cell size were detected. Phytoplankton were N and P co-limited, with autotrophic pico-eukaryotes being the exception as they increased even when only P was added after a 2-day time lag. The populations of Synechococcus and Prochlorococcus were highly competitive with each other; Prochlorococcus abundance increased during the first 2 days of P addition but kept increasing only when both N and P were added, whereas Synechococcus exhibited higher pigment content and increased in abundance 3 days after simultaneous N and P additions. Dinoflagellates also showed opportunistic behavior at simultaneous N and P additions, in contrast to diatoms and coccolithophores, which diminished in all incubations. High DNA content viruses, selective grazing, and the exhaustion of N sources probably controlled the populations of diatoms and coccolithophores.

Résumé: Intense regional warming was observed in the western Antarctic Peninsula (WAP) over the last 50 years. Here, we investigate the impact of climate change on primary production (PP) in this highly productive region. This study is based on temporal data series of ozone thickness (1972–2010), sea ice concentration (1978–2010), sea-surface temperature (1990–2010), incident irradiance (1988–2010) and satellite-derived chlorophyll a concentration (Chl-a, 1997–2010) for the coastal WAP. In addition, we apply a photosynthesis/photoinhibition spectral model to satellite-derived data (1997–2010) to compute PP and examine the separate impacts of environmental forcings. Since 1978, sea ice retreat has been occurring earlier in the season (in March in 1978 and in late October during the 2000s) while the ozone hole is present in early spring (i.e. August to November) since the early 1990s, increasing the intensity of ultraviolet-B radiation (UVBR, 280–320 nm). The WAP waters have also warmed over 1990–2010. The modelled PP rates are in the lower range of previously reported PP rates in the WAP. The annual open water PP in the study area increased from 1997 to 2010 (from 0.73 to 1.03 Tg C yr−1) concomitantly with the increase in the production season length. The coincidence between the earlier sea ice retreat and the presence of the ozone hole increased the exposure to incoming radiation (UVBR, UVAR and PAR) and, thus, increased photoinhibition during austral spring (September to November) in the study area (from 0.014 to 0.025 Tg C yr−1). This increase in photoinhibition was minor compared to the overall increase in PP, however. Climate change hence had an overall positive impact on PP in the WAP waters.

Résumé: ABSTRACT: The impact of fish and oysters on components of the pelagic microbial food web (MFW) was studied in a 10 d mesocosm experiment using Mediterranean coastal waters. Two mesocosms contained natural water only , 2 contained natural water with Crassostrea gigas (Oyster), and 2 contained natural water with Atherina spp. (Fish). Abundances and biomasses of microorganisms (viruses, bacteria, phytoplankton, heterotrophic flagellates, and ciliates) were measured to estimate their contribution to the total microbial carbon biomass. Two MFW indices, the microbial autotroph:heterotroph C biomass ratio (A:H) structural index and the gross primary production:respiration ratio (GPP:R) functional index, were defined. In the Fish mesocosms, selective predation on zooplankton led to a trophic cascade with 51% higher phytoplankton C biomass and consequently higher A:H and GPP:R than in the Controls. By the end of the experiment, the Oyster mesocosms had a bacterial C biomass 87% higher and phytoplankton C biomass 93% lower than the Controls, giving significantly lower A:H and GPP:R (<1). Overall, the results showed that wild zooplanktivorous fish had a cascading trophic effect, making the MFW more autotrophic (both indices gt;1), whereas oyster activities made the MFW more heterotrophic (both indices lt;1). These MFW indices can therefore be used to assess the impact of multiple local and global forcing factors on the MFW. The results presented here also have implications for sustainable management of coastal environments, suggesting that intense cultivation of filter feeders can be coupled with management to encourage wild local zooplanktivorous fishes to maintain a more resilient system and preserve the equilibrium of the MFW.

Résumé: ABSTRACT: Marine planktonic communities can be affected by increased temperatures associated with global climate change, as well as by increased ultraviolet B radiation (UVBR, 280-320 nm) through stratospheric ozone layer thinning. We studied individual and combined effects of increased temperature and UVBR on the plankton community of the Beagle Channel, southern Patagonia, Argentina. Eight 2 m³ mesocosms were exposed to 4 treatments (with 2 replicates) during 10 d: (1) control (natural temperature and UVBR), (2) increased UVBR (simulating a 60% decrease in stratospheric ozone layer thickness), (3) increased temperature (+ 3°C), and (4) simultaneous increased temperature and UVBR (60% decrease in stratospheric ozone; + 3°C). Two distinct situations were observed with regard to phytoplankton biomass: bloom (Days 1-4) and post-bloom (Days 5-9). Significant decreases in micro-sized diatoms (>20 µm), bacteria, chlorophyll a, and particulate organic carbon concentrations were observed during the post-bloom in the enhanced temperature treatments relative to natural temperature, accompanied by significant increases in nanophytoplankton (10-20 µm, mainly prymnesiophytes). The decrease in micro-sized diatoms in the high temperature treatment may have been caused by a physiological effect of warming, although we do not have activity measurements to support this hypothesis. Prymnesiophytes benefited from micro-sized diatom reduction in their competition for resources. The bacterial decrease under warming may have been due to a change in the dissolved organic matter release caused by the observed change in phytoplankton composition. Overall, the rise in temperature affected the structure and total biomass of the communities, while no major effect of UVBR was observed on the plankton community.

Résumé: We describe a new transportable floating mesocosm platform with autonomous sensors. The platform has 9 separate units that can be transported by medium-sized research vessels and positioned in coastal waters. The in situ mesocosms are equipped with a set of sensors for measuring water temperature, conductivity, chlorophyll a fluorescence (Chl a), and dissolved oxygen concentration. It can take measurements every 2 min, store these measurements, and transmit them in real time. Each mesocosm has a pump with regulated flow to mix the water column. One of the floating units is used as an in situ observatory to monitor the water temperature and Chl a in the water around the mesocosms as well as weather data and the incident light. The main data logger on the platform sends all the data collected to a remote PC computer. This floating mesocosm platform was successfully deployed in 2010 and 2011 in Mediterranean coastal waters (Thau lagoon and Cretan Sea, respectively). Simultaneous, automatic, high temporal resolution monitoring of physical, chemical, and biological parameters in the mesocosms proved to be a powerful, noninvasive, and effective approach for i) monitoring the variations in physical and chemical parameters in real time and ii) assessing the short-term variations in Chl a and the pelagic food web metabolism (e.g., the community respiration, gross primary production, and net community production) in the mesocosms without any manipulation of water samples.