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PhyloSor UniFrac

Quantifying phylogenetic beta diversity : distinguishing between ’true’ turnover of lineages and phylogenetic diversity gradients

Leprieur, F., Albouy, C., De Bortoli, J., Cowman, P. F., Bellwood, D. R., & Mouillot, D. (2012). Quantifying Phylogenetic Beta Diversity : Distinguishing between ’True’ Turnover of Lineages and Phylogenetic Diversity Gradients. Plos One, 7(8), e42760

For an example of dataset clik here

Zip - 6.6 ko




FDind

Contrasting changes in taxonomic versus functional diversity of tropical fish communities after habitat degradation.

Villeger, S., Miranda, J. R., Hernandez, D. F., & Mouillot, D. (2010). Contrasting changes in taxonomic vs. functional diversity of tropical fish communities after habitat degradation. Ecological Applications, 20(6), 1512–1522



R_otolith_microchem_elements_&_method_selection

R script for chemical elements selection for optimal discrimination of fish habitat based on otolith microchemistry.

Mercier, L., Darnaude, A. M., Bruguier, O., Vasconcelos, R. P., Cabral, H. N., Costa, M. J., et al. (2011). Selecting statistical models and variable combinations for optimal classification using otolith microchemistry. Ecological Applications, 21(4), 1352–1364

For an example of dataset clik here

Comma Separated Values - 8.7 ko




F_RED

New multidimensional functional diversity indices for a multifaceted framework in functional ecology.

Villeger, S., Mason, N. W. H., & Mouillot, D. (2008). New multidimensional functional diversity indices for a multifaceted framework in functional ecology. Ecology, 89(8), 2290–2301

GFD

Towards a consensus for calculating dendrogram-based functional diversity indices.

Mouchet, M., Guilhaumon, F., Villeger, S., Mason, N. W. H., Tomasini, J. - A., & Mouillot, D. (2008). Towards a consensus for calculating dendrogram-based functional diversity indices. Oikos, 117(5), 794–800

Trophdiv

Stable trophic structure across coastal nekton assemblages despite high species turnover.

Villeger, S., Miranda, J. R., Hernandez, D. F., Lopez, A. S., & Mouillot, D. (2008). Stable trophic structure across coastal nekton assemblages despite high species turnover. Marine Ecology-Progress Series, 364, 135–146

Qdecomp

Additive partitioning of diversity including species differences : a comment on Hardy & Senterre.

Villeger, S., & Mouillot, D. (2008). Additive partitioning of diversity including species differences : a comment on Hardy & Senterre (2007). Journal of Ecology, 96(5), 845–848.

Nicheoverlap

Niche overlap estimates based on quantitative functional traits : a new family of non-parametric indices.

David Mouillot, Wendy Stubbs, Matthieu Faure, Olivier Dumay, J. Antoine Tomasini, J. Bastow Wilson, Thang Do Chi. Niche overlap estimates based on quantitative functional traits : a new family of non-parametric indices, Oecologia, 2005, Volume 145, Number 3, Page 345

MARBEC MARine Biodiversity, Exploitation and Conservation, is a research unit which includes the staff of 4 organizations: IRD, IFREMER, UM and CNRS. Its objective is the study of marine biodiversity in lagoon coastal and offshore ecosystems, at different integration levels, molecular, individual, population and community aspects and the way humans use this biodiversity.