Résumé: Size-based approaches are paramount tools for the study of marine food webs. Here, we investigated the relationship between zooplankton body size, stable isotope composition and trophic level (TL) along a large-scale onshore-offshore gradient in the western tropical Atlantic. Samples were obtained on the Brazilian continental shelf, slope and in oceanic waters (off Fernando de Noronha archipelago and Rocas Atoll) in September and October 2015. Zooplankton was sieved into five size fractions. Zooplankton was dominated by copepods, except for the largest (> 2000 mu m) size fraction, that showed a high biovolume of chaetognaths, decapods, and fish larvae. Maximum zooplankton abundance and biovolume was found at the continental slope. POM showed consistently lower delta C-13 than zooplankton, indicating a selective use of C-13-rich primary food sources by zooplankton. Particulate organic matter (POM) was more C-13-enriched in shelf areas (average: -22.8, -23.6 and -24.3% at the shelf, slope and oceanic islands, respectively), probably due to the higher abundance of diatoms nearshore. POM had delta N-15 values between 2.5 and 6.9% (average: 4.0, 4.9 and 4.2% at the shelf, slope and oceanic islands, respectively). Zooplankton delta N-15 and TL increased with body size. The delta N-15 of the 200-500 mu m size fraction was used as baseline for TL estimation. Oceanic areas (average baseline delta N-15 = 5.8% +/- 0.52, n = 14) showed a higher baseline delta N-15 than the shelf (average = 3.9% +/- 0.69, n = 9) and the slope areas (average = 3.1% +/- 0.93, n = 9). In spite of differing baselines, the delta N-15 data produced a consistent pattern of log-linear increase in TL with increasing size, in all areas. The choice of input trophic enrichment factor (TEF) values only slightly changed the log10 (body size) vs TL slopes, but this choice had a considerable effect on the estimates of predator/prey size ratio (PPSR) and predator/prey mass ratio (PPMR). Using a TEF above 2.3 leads to unrealistic PPSR and PPMR estimates. Overall average slope was 0.59 +/- 0.08 TL mu m(-1) with TEF = 2.3 and 0.42 +/- 0.07 TL mu m(-1) with TEF = 3.2.

Résumé: Tetraodontiformes fishes play a critical role in benthic and demersal communities and are facing threats due to anthropogenic impacts and climate change. However, they are poorly studied worldwide. To improve knowledge on the socio-ecological significance and conservation of Tetraodontiformes a review of literature addressing the diversity, ecology, use and trade, conservation, and main threats of Tetraodontiformes combined with a comprehensive in situ dataset from two broad-range multidisciplinary oceanographic surveys performed along the Tropical Brazilian Continental Shelf was undertaken. Twenty-nine species were identified, being primarily found on coral reefs and algal ecosystems. At these habitats, tetraodontids present highly diversified trophic categories and might play an important role by balancing the marine food web Coral reef ecosystems, especially those near to the shelf break, seem to be the most important areas of Tetraodontiformes fishes, concentrating the highest values of species richness, relative abundance and the uncommon and Near Threatened species. Ninety per cent of species are commonly caught as bycatch, being also used in the ornamental trade (69%) and as food (52%), serving as an important source of income for artisanal local fisheries. Tetraodontiformes are threatened by unregulated fisheries, overexploitation, bycatch, and habitat loss due to coral reef degradation and the potential effects of climate change. These factors are more broadly impacting global biodiversity, food security, and other related ecosystem functions upon which humans and many other organisms rely. We recommend the following steps that could improve the conservation of Tetraodontiformes along the tropical Brazilian Continental shelf and elsewhere: (i) data collection of the commercial, incidental, ornamental and recreational catches; (ii) improvement of the current legislation directed at the marine ornamental harvesting; (iii) increase efforts focused on the education and conservation awareness in coastal tourism and communities; and, most important, (iv) creation of marine reserves networks in priority areas of conservation, protecting either the species and key habitats for its survival.

Résumé: Mesopelagic fishes are numerically the most important vertebrate group of all world's oceans. While these species are increasingly threatened by anthropogenic activities, basic biological knowledge is still lacking. For instance, major uncertainties remain on the behaviour, ecology, and thus functional roles of mesopelagic micronektivores, particularly regarding their interactions with physicochemical features. Here, we examine the trophic ecology, habitat, and migratory behaviour of the viperfish (Chauliodus sloani)-a poorly known and abundant deep-sea species-to further understand the ecology and thus functional role of mesopelagic micronektivores. Moreover, we explore how physical drivers may affect these features and how these relationships are likely to change over large oceanic areas. The viperfish heavily preys on epipelagic migrant species, especially myctophids, and presents spatial and trophic ontogenetic shifts. Temperature restricts its vertical distribution. Therefore, its trophodynamics, migratory behaviour, and functional roles are expected to be modulated by the latitudinal change in temperature. For instance, in most tropical regions the viperfish stay full-time feeding, excreting, and serving as prey (e.g. for bathypelagic predators) at deep layers. On the contrary, in temperate regions, the viperfish ascend to superficial waters where they trophically interact with epipelagic predators and may release carbon where its remineralization is the greatest.

Résumé: The phylogeography of the holoplanktonic chaetognath Flaccisagitta enflata was investigated in the Tropical Western Atlantic (TWA). Considering the cosmopolitan range of this species and the fact that its entire life cycle is planktonic, the central hypothesis of this study is that F. enflata exhibits connectivity due to its high dispersal capacity, forming a panmictic population among the study sites. The evaluated areas included neritic (Port of Recife-PR, and Tamandare – TA) and oceanic (Fernando de Noronha Archipelago-FN, Rocas Atoll-RA, Guara seamount-GS and Saint Peter and Saint Paul's Archipelago-SPSPA) locations of the Brazilian Blue Amazon. We used COI gene sequences as molecular marker. Partial sequences (425 bp) were obtained for 116 specimens and employed to reconstruct the phylogeny, build an haplotype network, evaluate gene flow through a migration model, and estimate diversity indices, population structuring and demographic history. High levels of haplotype diversity (mean: 0.98) and moderate to high levels of nucleotide diversity (mean: 0.023) were observed. The phylogeny and the haplotype network topologies showed some geographic clustering, indicating local structuring in GS and PR. This finding was supported by the AMOVA high global phi st (0.033, significant) and some pairwise phi st comparisons (7 out of 15 were significantly > 0). Significant differences suggested lower levels of connectivity when GS population was compared to those of FN and SPSPA; as well as when TA was compared to FN. These results might be related to particularities of the oceanic dynamics which rules the TWA, sustaining such dissimilarities. Structuring was also observed between PR and all oceanic locations. We hypothesize that the topography of the port inlet, enclosured by a reef barrier, may constrain the water turnover ratio and thus migration rates of F. enflata in the TWA. Accordingly, Migrate-N yielded a four metapopulations model (PR (sic) TA (sic) SPSPA+FN (sic) GS+RA) as the best (highest probability; similar to 0.90) to represent the structuring of F. enflata in the TWA. Therefore, the null hypothesis of one randomly mating population cannot be accepted. The demographic evaluation demonstrated that the neutral hypothesis of stable populations may not be rejected for most of the locations. This work is the start point to broaden the knowledge on the phylogeography and population genetic structure of a numerically dominant species in the Western Atlantic, with key role in the marine trophic web.

Résumé: The dynamic of the thermohaline structure of the upper ocean, which depends on ocean-atmosphere interactions, drives most near surface oceanic processes, including the control of gases and heat fluxes, and nutrient availability in the photic layer. The thermohaline structure of the southwestern tropical Atlantic (SWTA), a key region for diagnosing variation of the Atlantic Meridional Overturning Circulation, has prime impact on global climate. Characterising the thermohaline structure is typically based on the application of classical statistical methods on vertical profiles. Such approach has important limitations since classical methods do not explicitly contemplate the vertical nature of the profiles. Functional Data Analysis (FDA) is a new alternative to solve such drawbacks. Here, we apply an FDA approach to characterise the 3D canonical thermohaline structure of the SWTA in austral spring and fall. Our results reveal a clear spatial pattern with the presence of three areas with significantly different thermohaline structure. Area 1, mostly located along the continental slope, reflects the western boundary current system, with low static stability and high frequency of occurrence of barrier layer (BL). Conversely, Area 2, located along the Fernando de Noronha chain, presents strong static stability with a well-marked thermocline. This area, under the influence of the eastern Atlantic, is characterised by a low BL frequency, which is seasonally modulated by the latitudinal oscillation of the Intertropical Convergence Zone, controlling the regime of precipitation. In turn, Area 3 behaves as a transition zone between A1 and A2 with the presence of the water core of maximum salinity in subsurface, and therefore presence of strong-moderate BL. Beyond this study, FDA approach emerges as a powerful way to describe, characterise, classify and compare ocean patterns and processes. It can be applied to in situ data but could also be used to deeply and comprehensively explore ocean model output.

Résumé: In this paper, we provide some available information about the occurrence and some taxonomic aspects of 19 species from the Superfamily Oplophoroidea in the southwestern Atlantic (Brazilian waters), with the update to 22 species of Oplophoroidea occurring in Brazilian waters. Samples were collected during two sets of surveys. The first was performed in 2009 and 2011 in the Potiguar Basin in northeast of Brazil (03–05°S; 38–35°W; between the States of Ceará and Rio Grande do Norte) under the framework of the project “Avaliação da biota bentônica e planctônica da Bacia Potiguar e Ceará (Bpot)”, with samples collected from bottom trawls in the continental slope at depth ranging from 150–2068 m. Second, under the in the framework of the ABRACOS (Acoustic along the Brazilian coast), performed in 2015 and 2017 on seamounts and offshore areas in Northeast Brazil (Ceará Chain, Rio Grande do Norte and Rocas Atoll, Fernando de Noronha Archipelago and Pernambuco State), with samples with pelagic micronekton and mesopelagic nets, in depths ranging from 50–1260 m. We highlight the occurrence of 14 species of the family Acanthephyridae and 5 species of the family Oplophoridae, including the first occurrences of five species to Brazilian deep waters: Acanthephyra kingsleyi Spence Bate, 1888, Ephyrina ombango Crosnier & Forest, 1973, Meningodora compsa (Chace, 1940), M. longisulca Kikuchi, 1985 and Systellapsis curvispina Crosnier, 1987. These records increase the knowledge on deep-sea shrimps occurring in Southwestern Atlantic.

Résumé: The crustacean family of isopods, Dajidae, comprises 18 genera containing 54 species with widespread distribution. The species of this family are ectoparasites, especially on euphausiids, mysids and shrimps. The species of Holophryxus acanthephyrae has a life cycle involving a first intermediate host (copepod) and a definitive host (shrimp), and adheres particularly on deep-sea shrimps of genus Acanthephyra. Here, we make the first report of dajid isopod Holophryxus acanthephyrae from Brazilian waters (South Atlantic) and the first occurrence as parasite on deep-sea shrimp Acanthephyra acanthitelsonis. The specimen was collected under the framework of the project “ABRACOS 2” (Acoustic along the BRazilian COast), on board of R/V Antea in April 2017, using a Micronekton net (mesh size of 10 mm) in Rocas Atoll. The specimen female of Holophryxus acanthephyrae was found in pelagic zone in Rocas Atoll, at 630 m depth. This study increases the knowledge on Dajidae family and their host range.

Résumé: This study provides the length-weight relationship for eleven mesopelagic fishes from oceanic islands of the Southwestern Tropical Atlantic: Bonapartia pedaliota, Sigmops elongatus (Gonostomatidae), Argyropelecus aculeatus, Argyropelecus affinis, Argyropelecus sladeni, Sternoptyx diaphana, Sternoptyx pseudobscura (Sternoptychidae), Malacosteus niger, Thysanactis dentex (Stomiidae), Melanonus zugmayeri (Melanonidae), and Ectreposebastes imus (Setarchidae). Data were collected during a scientific survey (2017) around Rocas Atoll, Fernando de Noronha Archipelago and adjacent seamounts, using a micronekton trawl (side length of body mesh: 40 mm, side length of cod-end mesh: 10 mm) at 35 stations from 0 to 1,113 m depth. A new maximum standard length for Bonapartia pedaliota and Ectreposebastes imus are also provided.

Résumé: Upwelling of cold, nutrient-rich water from the oxygen minimum zone (OMZ) off Peru sustains the world’s highest production of forage fish, mostly composed of anchovy (Engraulis ringens). However, the potential impacts of climate change on upwelling dynamics and thus fish productivity in the near future are uncertain. Here, we reconstruct past changes in fish populations during the last 25,000 years to unravel their response to changes in OMZ intensity and productivity. We quantified and identified fish scales and bones deposited in laminated sediments from Pisco (Peru) with an average sampling resolution of 20.4 years (±7.1). The records span the Last Glacial Maximum to the recent Holocene and thus encompass a variety of combinations of productivity, oxygen, and global temperature. Our results reveal that productivity appears to be the main factor controlling small pelagic fish abundance, while sub-surface oxygenation affects mainly anchovy and likely sardine populations. Lower productivity and higher oxygen concentrations during the glacial resulted in lower total fish productivity, whereas higher productivity and a stronger OMZ in some time intervals during the Holocene resulted in higher fish abundances. A variety of different conditions between these two oceanographic end members indicate preferred environmental conditions for a variety of small pelagic fishes. There is no evidence in our record for an out of phase relationship between anchovy and sardine at the timescales examined in the present study. Anchovy have been the predominant small pelagic fish throughout the record, at least over centennial to millennial timescales. Its abundance reached a maximum during the Current Warm Period, an era characterized by high productivity and intense OMZ conditions. Thus, industrial fisheries developed during a period of exceptional productivity in relation to that of the last 25 kyr. The records reveal that dramatic decreases in pelagic fish abundances have occurred in response to past large-scale climate changes than those observed in the instrumental period, which suggests that future climate change may result in substantial changes in ecosystem structure.

Résumé: Copepod crustaceans of the genus Gaussia inhabit open ocean waters in epipelagic and bathypelagic zones from 0 to 5000 m. They show high-speed vertical migration and bioluminescent characteristics. In the Atlantic Ocean only the species G. asymmetrica Björnberg T. K. S. & Campaner, 1988 and G. princeps (Scott T., 1894) have been recorded previously. We report the first occurrence of the rarely recorded G. intermedia Defaye, 1998 for the Atlantic off Brazil. The specimens were collected around the Rocas Atoll (3°51′S 33°49′W), through the ABRAÇOS (Acoustic along the BRazilian COast) project on board R/V “Antea” in October 2015, using a micronekton net (mesh size 1 mm) and oblique hauls. Five specimens were collected at Rocas Atoll, in depths of 510-525 m. This finding expands the global distribution of G. intermedia and is the first occurrence in the Atlantic Ocean, updating the checklist of meso-bathypelagic copepods for Brazilian waters.

Résumé: Knowledge of the spatial distribution of fish assemblages biodiversity and structure is essential for prioritizing areas of conservation. Here we describe the biodiversity and community structure of demersal fish assemblages and their habitat along the northeast Brazilian coast by combining bottom trawl data and underwater footage. Species composition was estimated by number and weight, while patterns of dominance were obtained based on frequency of occurrence and relative abundance. A total of 7235 individuals (830 kg), distributed in 24 orders, 49 families and 120 species were collected. Community structure was investigated through clustering analysis and by a non-metric multidimensional scaling technique. Finally, diversity was assessed based on six indices. Four major assemblages were identified, mainly associated with habitat type and depth range. The higher values of richness were found in sand substrate with rocks, coralline formations and sponges (SWCR) habitats, while higher values of diversity were found in habitats located on shallow waters (10–30 m). Further, assemblages associated with sponge-reef formations presented the highest values of richness and diversity. In management strategies of conservation, we thus recommend giving special attention on SWCR habitats, mainly those located on depths between 30 and 60 m. This can be achieved by an offshore expansion of existing MPAs and/or by the creation of new MPAs encompassing those environments.

Résumé: In the highly productive Northern Humboldt Current System, 3 seabird species, the Guanay cormorant Phalacrocorax bougainvillii, the Peruvian booby Sula variegata and the Peruvian pelican Pelecanus thagus, commence breeding in austral spring, coinciding with the lowest availability of their prey, the Peruvian anchovy Engraulis ringens. This strategy ensures the matching of increased prey availability when young achieve independence in summer. This pattern was observed during the last decade when anchovy was abundant. However, over the last century, the abundance of anchovy has varied widely due to contrasting interdecadal regimes in oceanographic conditions and fishing activity. We hypothesized that these regime shifts affected the abundance and availability of prey and may have conditioned the breeding seasonality of seabirds. We examined the timing and magnitude of the onset of breeding using dynamic occupancy models and related these parameters to the seasonality of oceanographic conditions, abundance of anchovy and fishing pressure. During a regime of lower anchovy abundance (1977-1990), cormorants showed the highest flexibility, adjusting the timing of breeding from spring to winter and skipping reproduction in the worst conditions. Boobies showed the lowest flexibility, maintaining the same magnitude and timing of onset of breeding in spring. Pelicans showed intermediate flexibility, foregoing breeding during the worst conditions, but maintaining the onset of breeding in spring. The 3 species used sea surface temperature as a cue for the initiation of breeding. Furthermore, given their better diving abilities, cormorants could monitor prey availability changes associated with the reversion in the seasonality of the oxycline depth.

Résumé: AbstractThe deep-sea copepod Megacalanus princeps Wolfenden, 1904 was previously recorded from the northern and southeastern Atlantic, Indian and Pacific oceans, but not previously observed from southwestern Atlantic. Here we report its first occurrence in Brazilian waters. The current record increases the knowledge on the species distribution and on the deep-sea copepod fauna in the south Atlantic.Key words Geographic distribution; mesopelagic; northeastern Brazil; Calanoida

Résumé: Aquatic ecosystems of the Bolivian Altiplano (∼3800 m a.s.l.) are characterized by extreme hydro-climatic constrains (e.g., high UV-radiations and low oxygen) and are under the pressure of increasing anthropogenic activities, unregulated mining, agricultural and urban development. We report here a complete inventory of mercury (Hg) levels and speciation in the water column, atmosphere, sediment and key sentinel organisms (i.e., plankton, fish and birds) of two endorheic Lakes of the same watershed differing with respect to their size, eutrophication and contamination levels. Total Hg (THg) and monomethylmercury (MMHg) concentrations in filtered water and sediment of Lake Titicaca are in the lowest range of reported levels in other large lakes worldwide. Downstream, Hg levels are 3-10 times higher in the shallow eutrophic Lake Uru-Uru than in Lake Titicaca due to high Hg inputs from the surrounding mining region. High percentages of MMHg were found in the filtered and unfiltered water rising up from <1 to ∼50% THg from the oligo/hetero-trophic Lake Titicaca to the eutrophic Lake Uru-Uru. Such high %MMHg is explained by a high in situ MMHg production in relation to the sulfate rich substrate, the low oxygen levels of the water column, and the stabilization of MMHg due to abundant ligands present in these alkaline waters. Differences in MMHg concentrations in water and sediments compartments between Lake Titicaca and Uru-Uru were found to mirror the offset in MMHg levels that also exist in their respective food webs. This suggests that in situ MMHg baseline production is likely the main factor controlling MMHg levels in fish species consumed by the local population. Finally, the increase of anthropogenic pressure in Lake Titicaca may probably enhance eutrophication processes which favor MMHg production and thus accumulation in water and biota.

Résumé: South Pacific jack mackerel, Trachurus murphyi, has an ocean-scale distribution, from the South American coastline to New Zealand and Tasmania. This fish, captured by Humans since the Holocene, is nowadays heavily exploited and its population has decreased substantially since the mid-1990s. The uncertainty associated to jack mackerel population structure currently hampers management. Several hypotheses have been proposed from a single population up to several discrete populations. Still no.definitive answer was given. Determining how environmental conditions drive jack mackerel distribution can provide insights on its population structure. To do so, here we performed in three steps. First, we used satellite data to develop a statistical model of jack mackerel horizontal habitat suitability. Model predictions based on interaction between temperature and chlorophyll-a match the observed jack mackerel distribution, even during extreme El Nino event. Second, we studied the impact of oxygen and show that jack mackerel distribution and abundance is correlated to oxygen over a wide variety of scales and avoid low oxygen areas and periods. Third, on the basis of the above we built a conceptual 3D model of jack mackerel habitat in the Southeastern Pacific. We reveal the presence of a low suitable habitat along the Chilean and Peruvian coast, figuratively presenting a closed door caused by a gap in the horizontal habitat at 19-22 S and a shallow oxycline off south-centre Peru. This kind of situation likely occurs on a seasonal basis, in austral summer but also at longer temporal scales. A lack of exchanges at some periods/seasons partially isolate jack mackerel distributed off Peru. On the other hand the continuity in the habitat during most of the year explains why exchanges occur. We conclude that the more likely population structure for jack mackerel is a pelagic metapopulation. (C) 2016 Elsevier Ltd. All rights reserved.

Résumé: In fluctuating environments, matching breeding timing to periods of high resource availability is crucial for the fitness of many vertebrate species, and may have major consequences on population health. Yet, our understanding of the proximate environmental cues driving seasonal breeding is limited. This is particularly the case in marine ecosystems, where key environmental factors and prey abundance and availability are seldom quantified. The Northern Humboldt Current System (NHCS) is a highly productive, low-latitude ecosystem of moderate seasonality. In this ecosystem, three tropical seabird species (the Guanay Cormorant Phalacrocorax bougainvillii, the Peruvian Booby Sula variegata, and the Peruvian Pelican Pelecanus thagus) live in sympatry and prey almost exclusively on anchovy, Engraulis ringens. From January 2003 to December 2012, we monitored 31 breeding sites along the Peruvian coast to investigate the breeding cycle of these species. We tested for relationships between breeding timing, oceanographic conditions, and prey availability using occupancy models. We found that all three seabird species exhibited seasonal breeding patterns, with marked interspecific differences. Whereas breeding mainly started during the austral winter/early spring and ended in summer/early fall, this pattern was stronger in boobies and pelicans than in cormorants. Breeding onset mainly occurred when upwelling was intense but ecosystem productivity was below its annual maxima, and when anchovy were less available and in poor physiological condition. Conversely, the abundance and availability of anchovy improved during chick rearing and peaked around the time of fledging. These results suggest that breeding timing is adjusted so that fledging may occur under optimal environmental conditions, rather than being constrained by nutritional requirements during egg laying. Adjusting breeding time so that fledglings meet optimal conditions at independence is unique compared with other upwelling ecosystems and could be explained by the relatively high abundances of anchovy occurring throughout the year in the NHCS.

Résumé: Small pelagic fish aggregate within areas of suitable habitat to form patchy distributions with localized peaks in abundance. This presents challenges for geostatistical methods designed to investigate the processes underpinning the spatial distribution of stocks and simulate distributions for further analysis. In two-stage models, presence-absence is treated as separable and independent from the process explaining nonzero densities. This is appropriate where gaps in the distribution are attributable to one process and conditional abundance to another, but less so where patchiness is attributable primarily to the strong schooling tendencies of small pelagic fish within suitable habitat. We therefore developed a new modelling framework based on a truncated Gaussian random field (GRF) within a Bayesian framework. We evaluated this method using simulated test data and then applied it to acoustic survey data for Peruvian anchoveta (Engraulis ringens). We assessed the method's performance in terms of posterior densities of spatial parameters, and the density distribution, spatial pattern, and overall spatial distribution of posterior predictions. We conclude that Bayesian posterior prediction based on a truncated GRF is effective at reproducing the patchiness of the observed spatial distribution of anchoveta.

Résumé: The jumbo squid Dosidicus gigas plays an important role in marine food webs both as predator and prey. We investigated the ontogenetic and spatiotemporal variability of the diet composition of jumbo squid in the northern Humboldt Current system. For that purpose we applied several statistical methods to an extensive dataset of 3,618 jumbo squid non empty stomachs collected off Peru from 2004 to 2011. A total of 55 prey taxa was identified that we aggregated into eleven groups. Our results evidenced a large variability in prey composition as already observed in other systems. However, our data do not support the hypothesis that jumbo squids select the most abundant or energetic taxon in a prey assemblage, neglecting the other available prey. Indeed, multinomial model predictions showed that stomach fullness increased with the number of prey taxa, while most stomachs with low contents contained one or two prey taxa only. Our results therefore question the common hypothesis that predators seek locally dense aggregations of monospecific prey. In addition D. gigas consumes very few anchovy Engraulis ringens in Peru, whereas a tremendous biomass of anchovy is potentially available. It seems that D. gigas cannot reach the oxygen unsaturated waters very close to the coast, where the bulk of anchovy occurs. Indeed, even if jumbo squid can forage in hypoxic deep waters during the day, surface normoxic waters are then required to recover its maintenance respiration (or energy?). Oxygen concentration could thus limit the co-occurrence of both species and then preclude predator-prey interactions. Finally we propose a conceptual model illustrating the opportunistic foraging behaviour of jumbo squid impacted by ontogenetic migration and potentially constrained by oxygen saturation in surface waters.

Résumé: In this study, historical data available since 1954 were used to get new insight to ontogenetic and spatiotemporal variability in Peruvian anchovy or anchoveta Engraulis ringens diet. Whatever the period, E. ringens foraged mainly on macrozooplankton and the importance of euphausiids in E. ringens diet appears directly related to euphausiids abundance. This bottom-up effect is also observed at smaller scale because the euphausiids fraction increased with E. ringens total length and euphausiids accessibility. Selecting the largest prey, the euphausiids, provides an energetic advantage for E. ringens in its ecosystem where oxygen depletion imposes strong metabolic constraints on pelagic fishes. This study illustrates the plasticity of E. ringens that allows it to cope with its highly variable environment.

Résumé: A major goal in marine ecology is the understanding of the interactions between the dynamics of the different ecosystem components, from physics to top predators. While fishermen are among the main top predators at sea, almost none of the existing studies on ecology from physics to top predators contemplate fishermen as part of the system. The present work focuses on the coastal processes in the Northern Humboldt Current System, which encompasses both an intense climatic variability and the largest monospecific fishery of the world. From concomitant satellite, acoustic survey and Vessel Monitoring System data (∼90,000 fishing trips) for a ten-year period (2000–2009), we quantify the associations between the dynamics of the spatial behavior of fishermen, environmental conditions and anchovy (Engraulis ringens) biomass and spatial distribution. Using multivariate statistical analyses we show that environmental and anchovy conditions do significantly shape fishermen spatial behavior and present evidences that environmental fluctuations smoothed out along trophic levels. We propose a retrospective analysis of the study period in the light of the ecosystem scenarios evidenced and we finally discuss the potential use of fishermen spatial behavior as ecosystem indicator.

Résumé: Whereas fisheries acoustics data processing mainly focused on the detection, characterization, and recognition of individual fish schools, here we addressed the characterization and discrimination of fish school clusters. The proposed scheme relied on the application of the Bags-of-Features (BoF) approach to acoustic echograms. This approach is widely exploited for pattern recognition issues and naturally applies here, considering fish schools as the relevant elementary objects. It relies on the extraction and categorization of fish schools in fisheries acoustic data. Echogram descriptors were computed per unit echogram length as the numbers of schools in different school categories. We applied this approach to the discrimination of juvenile and adult anchovy (Engraulis ringens) off Peru. Whereas the discrimination of individual schools is low (below 70%), the proposed BoF scheme achieved between 89% and 92% of correct classification of juvenile and adult echograms for different survey data sets and significantly outperformed classical school-based echogram characteristics (about 10% of improvement of the correct classification rate). We further illustrate the potential of the proposed scheme for the estimation of the spatial distribution of juvenile and adult anchovy populations.

Résumé: The Northern Humboldt Current system (NHCS) produces more fish per unit area than any other region in the world. Although the system produces enough macrozooplankton to sustain its high production of forage fish, the paucity of information on macrozooplankton hampers research into the system. In this study, we estimated the biomass of the epipelagic crustacean macrozooplankton from the NHCS during both austral summer and spring 2005. To do this, we developed a bi-frequency acoustic method and extracted high-resolution information on the biomass and the patterns of distribution of crustacean macrozooplankton, fish and other marine compartments. We found that, although macrozooplankton comprises a number of distinct organisms, the euphausiids were the zooplankton group that better fitted the patterns from independent net sampling zooplankton data. Also, the similarities between the nocturnal patterns of size and biomass macrozooplankton distribution from this study and the known patterns of euphausiids, in particular Euphausia mucronata, suggest that euphausiids were the main constituent of the estimated nocturnal acoustic macrozooplankton biomass even if other organisms such as large copepods may have contributed considerably to the macrozooplankton biomass. The total macrozooplankton biomass was estimated to about 105 g m(-2), i.e., two to five times more than previous estimates. This direct biomass estimation of macrozooplankton is in agreement with the new findings in trophic ecology indicating that forage fish consume mainly macrozooplankton. This high biomass also supports the current hypotheses explaining the NHCS high fish production. Using the method, we are able to revisit present-day and historical acoustic databases and extract high-resolution data on macrozooplankton, a key ecological compartment of the ecosystem. Since zooplankton is the link between the physically driven primary producers and the biologically driven tertiary consumers, this information is essential to achieve a mechanistic understanding of the system, from physics to top predators.

Résumé: Shannon, L. J., Coll, M., Yemane, D., Jouffre, D., Neira, S., Bertrand, A., Diaz, E., and Shin, Y-J. 2010. Comparing data-based indicators across upwelling and comparable systems for communicating ecosystem states and trends. – ICES Journal of Marine Science, 67: 807-832.

Résumé: The species diversity of the four major Eastern Boundary Upwelling Ecosystems (EBUEs) is studied and compared with the aim of better understanding their functioning. Functional groups (FGs) of organisms were defined according to their taxonomy, body size and trophic level (TL), and span from plankton to top predators. Four large sub-divisions are defined in each system: two latitudinal sub-divisions (north and south) and two zonal sub-divisions (inshore and offshore), resulting in four sub-ecosystems per EBUE. A semi-quantitative approach is used in which only the dominant species (contributing 90% of overall biomass) are considered. EBUEs are compared in regard to their species composition, dominant species richness and evenness within FGs. The data are interpreted, focusing on latitudinal, zonal and depth gradients of diversity. Trophic flows (inflow and outflow) through the small pelagic fish FG are derived from different Ecopath models. This analysis of the four ecosystems and their sub-divisions does not provide support for the expected wasp-waist food web structure and functioning, with a single or several species of small pelagic fish primarily channelling the energy flow from lower to higher TL. Instead, similar low levels of richness were observed in many FGs of intermediate TL, allowing several energy transfer pathways. The gamma diversity is high due to the geographical distance between EBUEs and the presence or absence of rivers, but not to differences in their latitudinal position. The beta diversity is also high, due to the same factors plus the variation in shelf width and the contrast between inshore and offshore subdivisions. The differences in richness and evenness among EBUEs are minor and do not explain the higher secondary and tertiary productivity of the Humboldt ecosystem.

Résumé: The Peruvian anchovy or anchoveta (Engraulis ringens) supports the highest worldwide fishery landings
and varies in space and time over many scales. Here we present the first comprehensive sub-mesocale
study of anchoveta distribution in relation to the environment. During November 2004, we conducted
a behavioural ecology survey off central Peru and used a series of observational and sampling tools
including SST and CO2 sensors, Niskin bottles, CTD probes, zooplankton sampling, stomach content analysis,
echo-sounder, multibeam sonar, and bird observations. The sub-mesoscale survey areas were chosen
from mesoscale acoustic surveys. A routine coast-wide (2000 km) acoustic survey performed just
after the sub-mesoscale surveys, provided information at an even larger population scale. The availability
of nearly concurrent sub-mesoscale, mesoscale and coast-wide information on anchoveta distribution
allowed for a unique multi-scale synthesis. At the sub-mesoscale (100s m to km) physical processes
(internal waves and frontogenesis) concentrated plankton into patches and determined anchoveta spatial
distribution. At the mesoscale (10s km) location relative to the zone of active upwelling (and age of the
upwelled water) and the depth of the oxycline had strong impacts on the anchoveta. Finally, over 100s
km the size of the productive area, as defined by the upwelled cold coastal waters, was the determining
factor. We propose a conceptual view of the relative importance of social behaviour and environmental
(biotic and abiotic) processes on the spatial distribution of anchoveta. Our ecological space has two yaxis;
one based on self-organization (social behaviour), and the other based on the environmental processes.
At scales from the individual (10s cm), to the nucleus (m), social behaviour (e.g. the need to
school) drives spatial organization. At scales larger than the school, environmental forces are the main
driver of fish distribution. The conceptual ecosystem models presented in this paper may provide the
final links needed to develop accurate forecasts of the spatial distribution of anchoveta over multiple
scales.

Résumé: The world’s largest mono-specific fishery, the Peruvian anchovy or anchoveta (Engraulis ringens) fishery,
has been the subject of many studies since the 1960s. Details of its relationship with other species have
mainly focused on alternations with sardine, Sardinops sagax, and little effort has so far been paid to interactions
with other species sharing the same ecosystem. This is the case for Pleuroncodes monodon, the
crustacean squat lobster or ’munida’, which has become highly abundant along the Peruvian coast since
the mid-1990s. Munida is now an important prey for seabirds, mammals and coastal predatory fish.
Knowledge of patterns of distribution and ecological niche of munida is scarce however off Peru. Here
we describe and compare spatial patterns of distribution of anchoveta and munida and their ecological
niches based on data from 26 acoustic surveys performed along the Peruvian coast between 1998 and
2006. The results indicate that munida and anchoveta share ecological niches but that munida is
restricted to the coldest part of the productive cold coastal waters whereas anchoveta do not present
any temperature preference over a large range (14–23 C). The recent increase in munida abundance
off Peru is concomitant with colder conditions; with their onset munida extended its range from central
Chile northwards. Off Peru the very shallow oxycline keeps munida from its usual bottom habitat and has
forced it to adopt pelagic behaviour.